HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEF TITLE Crystal structure of CTCF ZFs2-8-Hs5-1aE COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.81 ANGSTORMS DBREF 5YEF J 292 490 UNP P49711 CTCF_HUMAN 292 490 SEQRES 1 J 24 GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE HIS GLU SEQRES 2 J 24 ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS ATOM 1 N GLY J 466 -69.622 -3.495 112.052 1.00 75.48 ATOM 2 CA GLY J 466 -71.052 -3.589 112.193 1.00 68.00 ATOM 3 C GLY J 466 -71.707 -2.234 112.201 1.00 59.91 ATOM 4 O GLY J 466 -71.059 -1.191 112.188 1.00 59.67 ATOM 5 N LYS J 467 -73.028 -2.262 112.162 1.00 67.46 ATOM 6 CA LYS J 467 -73.812 -1.151 112.664 1.00 66.99 ATOM 7 C LYS J 467 -74.755 -1.711 113.717 1.00 67.96 ATOM 8 O LYS J 467 -75.386 -2.748 113.486 1.00 69.06 ATOM 9 CB LYS J 467 -74.555 -0.459 111.566 1.00 67.44 ATOM 10 CG LYS J 467 -74.168 0.977 111.481 1.00 66.42 ATOM 11 CD LYS J 467 -72.667 1.189 111.565 1.00 65.95 ATOM 12 CE LYS J 467 -72.283 2.182 110.502 1.00 66.41 ATOM 13 NZ LYS J 467 -72.889 3.461 110.936 1.00 67.31 ATOM 14 N LYS J 468 -74.790 -1.070 114.903 1.00 71.90 ATOM 15 CA LYS J 468 -75.549 -1.593 116.031 1.00 72.05 ATOM 16 C LYS J 468 -76.915 -0.949 116.117 1.00 71.08 ATOM 17 O LYS J 468 -77.048 0.265 115.961 1.00 70.88 ATOM 18 CB LYS J 468 -74.801 -1.365 117.346 1.00 69.99 ATOM 19 CG LYS J 468 -75.634 -1.751 118.576 1.00 72.66 ATOM 20 CD LYS J 468 -74.952 -1.342 119.875 1.00 74.15 ATOM 21 CE LYS J 468 -75.440 0.003 120.419 1.00 75.54 ATOM 22 NZ LYS J 468 -76.810 -0.025 121.062 1.00 78.53 ATOM 23 N CYS J 469 -77.923 -1.761 116.413 1.00 66.73 ATOM 24 CA CYS J 469 -79.225 -1.172 116.652 1.00 68.52 ATOM 25 C CYS J 469 -79.091 -0.108 117.734 1.00 70.16 ATOM 26 O CYS J 469 -78.249 -0.201 118.634 1.00 70.64 ATOM 27 CB CYS J 469 -80.243 -2.231 117.062 1.00 70.83 ATOM 28 SG CYS J 469 -81.783 -1.491 117.630 1.00 76.24 ATOM 29 N ARG J 470 -79.909 0.929 117.618 1.00 78.20 ATOM 30 CA ARG J 470 -79.890 1.996 118.610 1.00 79.46 ATOM 31 C ARG J 470 -80.383 1.528 119.981 1.00 85.64 ATOM 32 O ARG J 470 -79.976 2.107 120.999 1.00 90.32 ATOM 33 CB ARG J 470 -80.666 3.212 118.114 1.00 81.64 ATOM 34 CG ARG J 470 -82.146 3.005 117.853 1.00 91.20 ATOM 35 CD ARG J 470 -82.567 1.973 116.793 1.00 93.02 ATOM 36 NE ARG J 470 -82.014 2.309 115.483 1.00 94.49 ATOM 37 CZ ARG J 470 -82.315 1.704 114.345 1.00 88.31 ATOM 38 NH1 ARG J 470 -83.183 0.710 114.291 1.00 93.27 ATOM 39 NH2 ARG J 470 -81.742 2.125 113.250 1.00 77.10 ATOM 40 N TYR J 471 -81.268 0.517 120.042 1.00 89.87 ATOM 41 CA TYR J 471 -81.837 0.066 121.316 1.00 91.53 ATOM 42 C TYR J 471 -81.613 -1.399 121.686 1.00 91.43 ATOM 43 O TYR J 471 -82.301 -1.879 122.586 1.00 95.21 ATOM 44 CB TYR J 471 -83.337 0.326 121.369 1.00 95.89 ATOM 45 CG TYR J 471 -83.807 1.566 120.659 1.00 96.55 ATOM 46 CD1 TYR J 471 -83.290 2.815 120.974 1.00 95.96 ATOM 47 CD2 TYR J 471 -84.778 1.490 119.705 1.00 97.86 ATOM 48 CE1 TYR J 471 -83.746 3.957 120.326 1.00 98.27 ATOM 49 CE2 TYR J 471 -85.233 2.603 119.031 1.00100.88 ATOM 50 CZ TYR J 471 -84.716 3.847 119.350 1.00101.58 ATOM 51 OH TYR J 471 -85.156 4.962 118.659 1.00 96.27 ATOM 52 N CYS J 472 -80.776 -2.159 120.984 1.00 84.13 ATOM 53 CA CYS J 472 -80.537 -3.534 121.429 1.00 92.18 ATOM 54 C CYS J 472 -79.128 -3.968 121.051 1.00 86.37 ATOM 55 O CYS J 472 -78.445 -3.297 120.274 1.00 83.56 ATOM 56 CB CYS J 472 -81.598 -4.503 120.873 1.00105.35 ATOM 57 SG CYS J 472 -81.581 -4.862 119.101 1.00112.85 ATOM 58 N ASP J 473 -78.732 -5.152 121.545 1.00104.58 ATOM 59 CA ASP J 473 -77.395 -5.670 121.273 1.00102.93 ATOM 60 C ASP J 473 -77.246 -6.214 119.851 1.00 97.56 ATOM 61 O ASP J 473 -76.133 -6.613 119.484 1.00 99.06 ATOM 62 CB ASP J 473 -76.955 -6.733 122.303 1.00107.66 ATOM 63 CG ASP J 473 -78.118 -7.479 122.967 1.00114.56 ATOM 64 OD1 ASP J 473 -77.830 -8.475 123.681 1.00115.79 ATOM 65 OD2 ASP J 473 -79.297 -7.090 122.795 1.00118.30 ATOM 66 N ALA J 474 -78.320 -6.258 119.057 1.00 75.56 ATOM 67 CA ALA J 474 -78.235 -6.812 117.705 1.00 72.14 ATOM 68 C ALA J 474 -77.447 -5.888 116.790 1.00 68.93 ATOM 69 O ALA J 474 -77.746 -4.697 116.667 1.00 68.11 ATOM 70 CB ALA J 474 -79.623 -7.050 117.125 1.00 72.89 ATOM 71 N VAL J 475 -76.462 -6.444 116.119 1.00 69.65 ATOM 72 CA VAL J 475 -75.700 -5.707 115.125 1.00 70.54 ATOM 73 C VAL J 475 -76.144 -6.182 113.746 1.00 71.28 ATOM 74 O VAL J 475 -76.614 -7.316 113.581 1.00 72.40 ATOM 75 CB VAL J 475 -74.181 -5.867 115.338 1.00 72.71 ATOM 76 CG1 VAL J 475 -73.891 -5.907 116.825 1.00 73.98 ATOM 77 CG2 VAL J 475 -73.673 -7.123 114.666 1.00 78.27 ATOM 78 N PHE J 476 -76.062 -5.270 112.772 1.00 66.75 ATOM 79 CA PHE J 476 -76.437 -5.517 111.388 1.00 65.71 ATOM 80 C PHE J 476 -75.291 -5.107 110.479 1.00 66.68 ATOM 81 O PHE J 476 -74.478 -4.248 110.830 1.00 65.30 ATOM 82 CB PHE J 476 -77.696 -4.736 111.008 1.00 67.27 ATOM 83 CG PHE J 476 -78.925 -5.196 111.722 1.00 72.24 ATOM 84 CD1 PHE J 476 -79.234 -4.721 112.980 1.00 70.38 ATOM 85 CD2 PHE J 476 -79.749 -6.146 111.151 1.00 77.22 ATOM 86 CE1 PHE J 476 -80.361 -5.152 113.631 1.00 73.41 ATOM 87 CE2 PHE J 476 -80.879 -6.591 111.805 1.00 78.46 ATOM 88 CZ PHE J 476 -81.186 -6.092 113.050 1.00 76.43 ATOM 89 N HIS J 477 -75.250 -5.720 109.288 1.00 77.32 ATOM 90 CA HIS J 477 -74.197 -5.484 108.307 1.00 77.21 ATOM 91 C HIS J 477 -74.708 -4.854 107.017 1.00 82.60 ATOM 92 O HIS J 477 -73.932 -4.690 106.063 1.00 86.30 ATOM 93 CB HIS J 477 -73.467 -6.794 108.010 1.00 78.84 ATOM 94 CG HIS J 477 -72.758 -7.370 109.201 1.00 82.76 ATOM 95 ND1 HIS J 477 -71.452 -7.053 109.527 1.00 85.04 ATOM 96 CD2 HIS J 477 -73.192 -8.212 110.176 1.00 81.77 ATOM 97 CE1 HIS J 477 -71.103 -7.701 110.627 1.00 82.02 ATOM 98 NE2 HIS J 477 -72.141 -8.407 111.044 1.00 80.06 ATOM 99 N GLU J 478 -75.995 -4.532 106.933 1.00 86.88 ATOM 100 CA GLU J 478 -76.513 -3.752 105.818 1.00 86.88 ATOM 101 C GLU J 478 -77.507 -2.759 106.409 1.00 83.64 ATOM 102 O GLU J 478 -78.243 -3.096 107.341 1.00 81.19 ATOM 103 CB GLU J 478 -77.130 -4.655 104.738 1.00 87.21 ATOM 104 CG GLU J 478 -78.620 -4.891 104.797 1.00 93.24 ATOM 105 CD GLU J 478 -79.158 -5.491 103.494 1.00103.29 ATOM 106 OE1 GLU J 478 -78.356 -5.714 102.548 1.00107.84 ATOM 107 OE2 GLU J 478 -80.392 -5.689 103.396 1.00106.39 ATOM 108 N ARG J 479 -77.428 -1.505 105.974 1.00 65.06 ATOM 109 CA ARG J 479 -78.235 -0.464 106.602 1.00 64.11 ATOM 110 C ARG J 479 -79.730 -0.749 106.480 1.00 66.80 ATOM 111 O ARG J 479 -80.539 -0.280 107.295 1.00 70.07 ATOM 112 CB ARG J 479 -77.896 0.892 105.999 1.00 63.09 ATOM 113 CG ARG J 479 -78.785 1.979 106.462 1.00 63.95 ATOM 114 CD ARG J 479 -78.273 3.297 106.005 1.00 65.12 ATOM 115 NE ARG J 479 -79.038 4.375 106.593 1.00 66.36 ATOM 116 CZ ARG J 479 -78.854 4.753 107.844 1.00 66.20 ATOM 117 NH1 ARG J 479 -77.933 4.137 108.583 1.00 64.71 ATOM 118 NH2 ARG J 479 -79.567 5.744 108.355 1.00 67.91 ATOM 119 N TYR J 480 -80.131 -1.451 105.430 1.00 76.12 ATOM 120 CA TYR J 480 -81.550 -1.686 105.237 1.00 77.08 ATOM 121 C TYR J 480 -82.115 -2.460 106.410 1.00 78.31 ATOM 122 O TYR J 480 -83.054 -2.005 107.067 1.00 81.26 ATOM 123 CB TYR J 480 -81.788 -2.442 103.936 1.00 79.46 ATOM 124 CG TYR J 480 -83.230 -2.814 103.694 1.00 78.46 ATOM 125 CD1 TYR J 480 -84.215 -1.839 103.627 1.00 78.70 ATOM 126 CD2 TYR J 480 -83.608 -4.142 103.520 1.00 80.13 ATOM 127 CE1 TYR J 480 -85.541 -2.169 103.394 1.00 85.76 ATOM 128 CE2 TYR J 480 -84.935 -4.487 103.295 1.00 86.77 ATOM 129 CZ TYR J 480 -85.897 -3.497 103.234 1.00 89.61 ATOM 130 OH TYR J 480 -87.213 -3.843 102.998 1.00 95.14 ATOM 131 N ALA J 481 -81.516 -3.610 106.717 1.00 72.11 ATOM 132 CA ALA J 481 -82.042 -4.439 107.788 1.00 71.12 ATOM 133 C ALA J 481 -82.027 -3.677 109.093 1.00 72.02 ATOM 134 O ALA J 481 -82.987 -3.748 109.868 1.00 77.15 ATOM 135 CB ALA J 481 -81.238 -5.724 107.910 1.00 69.41 ATOM 136 N LEU J 482 -80.979 -2.880 109.316 1.00 70.24 ATOM 137 CA LEU J 482 -80.874 -2.099 110.537 1.00 66.86 ATOM 138 C LEU J 482 -82.065 -1.178 110.690 1.00 69.99 ATOM 139 O LEU J 482 -82.741 -1.182 111.722 1.00 75.03 ATOM 140 CB LEU J 482 -79.589 -1.280 110.511 1.00 64.16 ATOM 141 CG LEU J 482 -79.521 -0.127 111.520 1.00 68.32 ATOM 142 CD1 LEU J 482 -79.644 -0.527 113.017 1.00 71.53 ATOM 143 CD2 LEU J 482 -78.226 0.613 111.281 1.00 62.62 ATOM 144 N ILE J 483 -82.359 -0.398 109.655 1.00 75.86 ATOM 145 CA ILE J 483 -83.485 0.515 109.752 1.00 75.73 ATOM 146 C ILE J 483 -84.799 -0.252 109.835 1.00 82.06 ATOM 147 O ILE J 483 -85.727 0.161 110.546 1.00 81.53 ATOM 148 CB ILE J 483 -83.462 1.519 108.590 1.00 71.98 ATOM 149 CG1 ILE J 483 -82.137 2.277 108.647 1.00 69.13 ATOM 150 CG2 ILE J 483 -84.671 2.453 108.629 1.00 73.71 ATOM 151 CD1 ILE J 483 -82.038 3.231 109.825 1.00 68.99 ATOM 152 N GLN J 484 -84.903 -1.378 109.126 1.00 89.31 ATOM 153 CA GLN J 484 -86.166 -2.115 109.068 1.00 96.48 ATOM 154 C GLN J 484 -86.556 -2.711 110.410 1.00102.76 ATOM 155 O GLN J 484 -87.724 -2.657 110.810 1.00107.26 ATOM 156 CB GLN J 484 -86.063 -3.212 108.019 1.00 97.05 ATOM 157 CG GLN J 484 -86.299 -2.702 106.644 1.00 96.06 ATOM 158 CD GLN J 484 -87.677 -2.102 106.532 1.00 98.86 ATOM 159 OE1 GLN J 484 -88.681 -2.820 106.586 1.00104.49 ATOM 160 NE2 GLN J 484 -87.741 -0.785 106.355 1.00 97.92 ATOM 161 N HIS J 485 -85.595 -3.298 111.101 1.00102.26 ATOM 162 CA HIS J 485 -85.852 -3.969 112.362 1.00110.38 ATOM 163 C HIS J 485 -86.362 -3.040 113.467 1.00116.17 ATOM 164 O HIS J 485 -87.027 -3.522 114.386 1.00122.35 ATOM 165 CB HIS J 485 -84.590 -4.742 112.755 1.00106.68 ATOM 166 CG HIS J 485 -84.194 -4.585 114.183 1.00102.35 ATOM 167 ND1 HIS J 485 -84.211 -5.625 115.085 1.00101.08 ATOM 168 CD2 HIS J 485 -83.737 -3.510 114.862 1.00101.56 ATOM 169 CE1 HIS J 485 -83.795 -5.195 116.263 1.00100.92 ATOM 170 NE2 HIS J 485 -83.504 -3.914 116.155 1.00101.17 ATOM 171 N GLN J 486 -86.122 -1.733 113.369 1.00106.44 ATOM 172 CA GLN J 486 -86.324 -0.783 114.461 1.00107.33 ATOM 173 C GLN J 486 -87.650 -0.959 115.210 1.00114.57 ATOM 174 O GLN J 486 -87.754 -0.524 116.367 1.00120.33 ATOM 175 CB GLN J 486 -86.224 0.642 113.939 1.00106.53 ATOM 176 CG GLN J 486 -87.558 1.263 113.553 1.00111.95 ATOM 177 CD GLN J 486 -88.324 0.451 112.513 1.00117.30 ATOM 178 OE1 GLN J 486 -89.429 -0.020 112.781 1.00120.74 ATOM 179 NE2 GLN J 486 -87.741 0.281 111.329 1.00114.61 ATOM 180 N LYS J 487 -88.693 -1.490 114.567 1.00114.42 ATOM 181 CA LYS J 487 -89.958 -1.696 115.264 1.00116.34 ATOM 182 C LYS J 487 -89.812 -2.742 116.369 1.00119.19 ATOM 183 O LYS J 487 -89.116 -3.750 116.202 1.00116.22 ATOM 184 CB LYS J 487 -91.043 -2.137 114.271 1.00116.92 ATOM 185 CG LYS J 487 -90.740 -3.422 113.497 1.00113.59 ATOM 186 CD LYS J 487 -91.793 -4.509 113.761 1.00116.86 ATOM 187 CE LYS J 487 -91.199 -5.697 114.536 1.00116.71 ATOM 188 NZ LYS J 487 -92.064 -6.916 114.428 1.00119.18 ATOM 189 N SER J 488 -90.507 -2.534 117.496 1.00142.63 ATOM 190 CA SER J 488 -91.411 -1.397 117.776 1.00147.14 ATOM 191 C SER J 488 -90.789 -0.007 117.992 1.00145.13 ATOM 192 O SER J 488 -91.374 0.978 117.558 1.00146.41 ATOM 193 CB SER J 488 -92.302 -1.735 118.999 1.00149.52 ATOM 194 N HIS J 489 -89.637 0.122 118.658 1.00132.07 ATOM 195 CA HIS J 489 -88.898 -0.918 119.366 1.00127.85 ATOM 196 C HIS J 489 -89.512 -1.209 120.748 1.00127.25 ATOM 197 O HIS J 489 -90.064 -2.286 121.005 1.00126.36 ATOM 198 CB HIS J 489 -87.445 -0.461 119.521 1.00122.15 ATOM 199 CG HIS J 489 -86.421 -1.525 119.256 1.00115.25 ATOM 200 ND1 HIS J 489 -86.719 -2.870 119.208 1.00112.41 ATOM 201 CD2 HIS J 489 -85.095 -1.430 119.009 1.00110.62 ATOM 202 CE1 HIS J 489 -85.617 -3.554 118.959 1.00105.67 ATOM 203 NE2 HIS J 489 -84.620 -2.701 118.835 1.00104.64 ATOM 204 ZN ZN J 506 -83.131 -3.431 118.438 1.00 83.87 TER