HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEF TITLE Crystal structure of CTCF ZFs2-8-Hs5-1aE COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.81 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR J 42 REMARK 465 SER J 43 DBREF 5YEF J 292 490 UNP P49711 CTCF_HUMAN 292 490 SEQRES 1 J 26 PRO HIS LYS CYS PRO ASP CYS ASP MET ALA PHE VAL THR SEQRES 2 J 26 SER GLY GLU LEU VAL ARG HIS ARG ARG TYR LYS HIS THR ATOM 1 N PRO J 321 -66.615 17.009 43.942 1.00160.04 ATOM 2 CA PRO J 321 -66.857 15.580 43.956 1.00160.64 ATOM 3 C PRO J 321 -67.912 15.229 44.998 1.00157.33 ATOM 4 O PRO J 321 -67.601 15.057 46.181 1.00151.43 ATOM 5 CB PRO J 321 -65.569 14.818 44.214 1.00159.49 ATOM 6 N HIS J 322 -69.167 15.130 44.551 1.00212.65 ATOM 7 CA HIS J 322 -70.306 14.866 45.430 1.00204.95 ATOM 8 C HIS J 322 -71.162 13.733 44.872 1.00210.35 ATOM 9 O HIS J 322 -71.579 13.793 43.715 1.00214.07 ATOM 10 CB HIS J 322 -71.163 16.128 45.606 1.00197.64 ATOM 11 N LYS J 323 -71.350 12.670 45.663 1.00190.03 ATOM 12 CA LYS J 323 -72.156 11.506 45.275 1.00195.74 ATOM 13 C LYS J 323 -72.220 10.514 46.428 1.00192.33 ATOM 14 O LYS J 323 -71.182 10.183 47.001 1.00189.76 ATOM 15 CB LYS J 323 -71.593 10.817 44.024 1.00200.46 ATOM 16 N CYS J 324 -73.393 10.032 46.804 1.00167.58 ATOM 17 CA CYS J 324 -73.316 9.073 47.898 1.00165.48 ATOM 18 C CYS J 324 -74.090 7.794 47.596 1.00163.41 ATOM 19 O CYS J 324 -75.132 7.839 46.924 1.00159.62 ATOM 20 CB CYS J 324 -73.770 9.720 49.213 1.00166.41 ATOM 21 SG CYS J 324 -73.344 8.824 50.729 1.00162.45 ATOM 22 N PRO J 325 -73.579 6.627 48.031 1.00203.29 ATOM 23 CA PRO J 325 -74.305 5.386 47.727 1.00208.32 ATOM 24 C PRO J 325 -75.677 5.295 48.384 1.00208.47 ATOM 25 O PRO J 325 -76.651 4.949 47.703 1.00213.86 ATOM 26 CB PRO J 325 -73.343 4.302 48.236 1.00205.12 ATOM 27 CG PRO J 325 -72.602 4.974 49.344 1.00197.10 ATOM 28 CD PRO J 325 -72.343 6.354 48.793 1.00199.56 ATOM 29 N ASP J 326 -75.801 5.597 49.677 1.00173.04 ATOM 30 CA ASP J 326 -77.088 5.435 50.352 1.00166.53 ATOM 31 C ASP J 326 -77.834 6.733 50.637 1.00165.31 ATOM 32 O ASP J 326 -79.058 6.760 50.530 1.00164.88 ATOM 33 CB ASP J 326 -76.909 4.676 51.667 1.00161.02 ATOM 34 N CYS J 327 -77.142 7.839 50.893 1.00173.32 ATOM 35 CA CYS J 327 -77.821 9.088 51.215 1.00171.46 ATOM 36 C CYS J 327 -77.477 10.148 50.174 1.00172.19 ATOM 37 O CYS J 327 -76.714 9.899 49.237 1.00170.58 ATOM 38 CB CYS J 327 -77.439 9.572 52.623 1.00166.18 ATOM 39 SG CYS J 327 -75.907 8.875 53.256 1.00162.96 ATOM 40 N ASP J 328 -78.106 11.320 50.298 1.00150.18 ATOM 41 CA ASP J 328 -77.914 12.353 49.283 1.00148.88 ATOM 42 C ASP J 328 -76.656 13.163 49.542 1.00141.57 ATOM 43 O ASP J 328 -75.876 13.434 48.625 1.00143.02 ATOM 44 CB ASP J 328 -79.138 13.271 49.224 1.00149.45 ATOM 45 N MET J 329 -76.434 13.538 50.787 1.00156.07 ATOM 46 CA MET J 329 -75.336 14.427 51.136 1.00155.63 ATOM 47 C MET J 329 -74.014 13.769 50.811 1.00159.11 ATOM 48 O MET J 329 -73.914 12.540 50.777 1.00160.29 ATOM 49 CB MET J 329 -75.394 14.776 52.603 1.00150.41 ATOM 50 N ALA J 330 -72.996 14.604 50.580 1.00165.29 ATOM 51 CA ALA J 330 -71.691 14.242 50.018 1.00165.76 ATOM 52 C ALA J 330 -70.950 15.551 49.754 1.00163.11 ATOM 53 O ALA J 330 -71.594 16.564 49.468 1.00166.42 ATOM 54 CB ALA J 330 -71.850 13.398 48.743 1.00170.15 ATOM 55 N PHE J 331 -69.627 15.563 49.897 1.00149.25 ATOM 56 CA PHE J 331 -68.834 16.775 49.728 1.00141.94 ATOM 57 C PHE J 331 -67.403 16.398 49.349 1.00133.06 ATOM 58 O PHE J 331 -67.067 15.221 49.199 1.00138.59 ATOM 59 CB PHE J 331 -68.891 17.645 50.988 1.00140.74 ATOM 60 N VAL J 332 -66.563 17.416 49.167 1.00112.46 ATOM 61 CA VAL J 332 -65.157 17.206 48.868 1.00109.15 ATOM 62 C VAL J 332 -64.271 17.221 50.103 1.00108.74 ATOM 63 O VAL J 332 -63.068 17.478 50.033 1.00105.82 ATOM 64 N GLY J 335 -62.429 12.443 51.256 1.00145.15 ATOM 65 CA GLY J 335 -62.832 12.620 52.648 1.00138.75 ATOM 66 C GLY J 335 -64.351 12.566 52.801 1.00144.65 ATOM 67 O GLY J 335 -64.912 11.490 53.044 1.00150.45 ATOM 68 N GLU J 336 -65.005 13.719 52.601 1.00135.26 ATOM 69 CA GLU J 336 -66.427 13.868 52.914 1.00138.11 ATOM 70 C GLU J 336 -67.340 12.921 52.162 1.00148.01 ATOM 71 O GLU J 336 -68.539 12.850 52.439 1.00151.56 ATOM 72 CB GLU J 336 -66.857 15.306 52.644 1.00127.93 ATOM 73 N LEU J 337 -66.735 12.129 51.292 1.00130.89 ATOM 74 CA LEU J 337 -67.350 10.978 50.652 1.00131.71 ATOM 75 C LEU J 337 -66.737 9.674 51.125 1.00132.29 ATOM 76 O LEU J 337 -67.448 8.698 51.316 1.00135.08 ATOM 77 CB LEU J 337 -67.197 11.095 49.136 1.00136.75 ATOM 78 CG LEU J 337 -68.348 10.598 48.282 1.00140.72 ATOM 79 CD1 LEU J 337 -69.385 9.855 49.145 1.00144.56 ATOM 80 CD2 LEU J 337 -68.913 11.783 47.486 1.00141.89 ATOM 81 N VAL J 338 -65.420 9.649 51.284 1.00133.36 ATOM 82 CA VAL J 338 -64.733 8.437 51.730 1.00133.72 ATOM 83 C VAL J 338 -65.057 8.119 53.184 1.00127.55 ATOM 84 O VAL J 338 -65.672 7.090 53.494 1.00126.52 ATOM 85 CB VAL J 338 -63.218 8.566 51.508 1.00126.39 ATOM 86 CG1 VAL J 338 -62.464 7.426 52.168 1.00114.32 ATOM 87 CG2 VAL J 338 -62.929 8.637 50.029 1.00131.20 ATOM 88 N ARG J 339 -64.746 9.048 54.077 1.00118.06 ATOM 89 CA ARG J 339 -64.936 8.793 55.499 1.00113.96 ATOM 90 C ARG J 339 -66.413 8.704 55.856 1.00109.72 ATOM 91 O ARG J 339 -66.802 7.869 56.675 1.00112.34 ATOM 92 CB ARG J 339 -64.264 9.871 56.334 1.00109.27 ATOM 93 CG ARG J 339 -63.998 9.501 57.802 1.00104.71 ATOM 94 CD ARG J 339 -63.603 10.751 58.561 1.00 99.69 ATOM 95 NE ARG J 339 -64.382 11.873 58.054 1.00 97.87 ATOM 96 CZ ARG J 339 -64.143 13.146 58.329 1.00 91.95 ATOM 97 NH1 ARG J 339 -63.134 13.484 59.129 1.00 85.80 ATOM 98 NH2 ARG J 339 -64.916 14.081 57.792 1.00 94.05 ATOM 99 N HIS J 340 -67.249 9.565 55.279 1.00120.96 ATOM 100 CA HIS J 340 -68.679 9.469 55.558 1.00122.49 ATOM 101 C HIS J 340 -69.250 8.137 55.095 1.00129.51 ATOM 102 O HIS J 340 -69.984 7.476 55.842 1.00128.40 ATOM 103 CB HIS J 340 -69.435 10.659 54.959 1.00122.21 ATOM 104 CG HIS J 340 -70.915 10.455 54.869 1.00130.37 ATOM 105 ND1 HIS J 340 -71.769 10.674 55.930 1.00129.36 ATOM 106 CD2 HIS J 340 -71.698 10.104 53.821 1.00142.24 ATOM 107 CE1 HIS J 340 -73.010 10.426 55.550 1.00137.02 ATOM 108 NE2 HIS J 340 -72.996 10.085 54.274 1.00144.52 ATOM 109 N ARG J 341 -68.912 7.716 53.874 1.00137.17 ATOM 110 CA ARG J 341 -69.409 6.436 53.395 1.00140.84 ATOM 111 C ARG J 341 -68.919 5.292 54.268 1.00146.07 ATOM 112 O ARG J 341 -69.655 4.325 54.510 1.00150.62 ATOM 113 CB ARG J 341 -68.997 6.200 51.941 1.00142.72 ATOM 114 N ARG J 342 -67.663 5.362 54.725 1.00159.86 ATOM 115 CA ARG J 342 -67.131 4.321 55.603 1.00154.99 ATOM 116 C ARG J 342 -67.779 4.361 56.989 1.00146.83 ATOM 117 O ARG J 342 -67.945 3.311 57.630 1.00150.42 ATOM 118 CB ARG J 342 -65.598 4.420 55.685 1.00153.75 ATOM 119 CG ARG J 342 -64.902 4.515 54.276 1.00161.13 ATOM 120 CD ARG J 342 -64.954 3.240 53.413 1.00164.27 ATOM 121 NE ARG J 342 -64.555 3.449 52.008 1.00168.37 ATOM 122 CZ ARG J 342 -63.319 3.311 51.533 1.00177.04 ATOM 123 NH1 ARG J 342 -63.074 3.512 50.239 1.00181.29 ATOM 124 NH2 ARG J 342 -62.349 2.905 52.346 1.00176.77 ATOM 125 N TYR J 343 -68.152 5.549 57.473 1.00111.13 ATOM 126 CA TYR J 343 -68.771 5.647 58.793 1.00113.73 ATOM 127 C TYR J 343 -70.179 5.099 58.781 1.00110.56 ATOM 128 O TYR J 343 -70.544 4.282 59.633 1.00113.73 ATOM 129 CB TYR J 343 -68.842 7.113 59.259 1.00115.89 ATOM 130 CG TYR J 343 -67.894 7.515 60.348 1.00105.28 ATOM 131 CD1 TYR J 343 -67.967 6.919 61.597 1.00102.31 ATOM 132 CD2 TYR J 343 -67.016 8.566 60.181 1.00 94.62 ATOM 133 CE1 TYR J 343 -67.134 7.306 62.622 1.00 98.07 ATOM 134 CE2 TYR J 343 -66.180 8.965 61.203 1.00 90.03 ATOM 135 CZ TYR J 343 -66.245 8.328 62.426 1.00 92.69 ATOM 136 OH TYR J 343 -65.433 8.689 63.475 1.00 88.50 ATOM 137 N LYS J 344 -70.997 5.569 57.852 1.00113.38 ATOM 138 CA LYS J 344 -72.424 5.283 57.893 1.00124.95 ATOM 139 C LYS J 344 -72.850 4.111 57.011 1.00128.79 ATOM 140 O LYS J 344 -73.984 3.644 57.155 1.00131.19 ATOM 141 CB LYS J 344 -73.199 6.574 57.573 1.00128.39 ATOM 142 CG LYS J 344 -73.319 7.471 58.826 1.00125.10 ATOM 143 CD LYS J 344 -74.187 8.720 58.629 1.00121.79 ATOM 144 CE LYS J 344 -73.976 9.725 59.774 1.00117.07 ATOM 145 NZ LYS J 344 -74.488 11.117 59.540 1.00111.97 ATOM 146 N HIS J 345 -71.978 3.599 56.130 1.00114.33 ATOM 147 CA HIS J 345 -72.361 2.488 55.251 1.00108.51 ATOM 148 C HIS J 345 -71.476 1.257 55.433 1.00107.29 ATOM 149 O HIS J 345 -72.013 0.172 55.667 1.00106.27 ATOM 150 CB HIS J 345 -72.345 2.936 53.779 1.00105.47 ATOM 151 CG HIS J 345 -72.963 4.281 53.554 1.00104.88 ATOM 152 ND1 HIS J 345 -74.285 4.551 53.826 1.00103.78 ATOM 153 CD2 HIS J 345 -72.444 5.428 53.055 1.00109.37 ATOM 154 CE1 HIS J 345 -74.539 5.819 53.546 1.00105.49 ATOM 155 NE2 HIS J 345 -73.442 6.370 53.064 1.00105.88 ATOM 156 N THR J 346 -70.156 1.358 55.275 1.00 93.01 ATOM 157 CA THR J 346 -69.222 0.241 55.470 1.00100.61 ATOM 158 C THR J 346 -68.417 0.397 56.745 1.00121.29 ATOM 159 O THR J 346 -67.273 0.875 56.708 1.00141.66 ATOM 160 CB THR J 346 -68.238 0.076 54.362 1.00 94.84 ATOM 161 OG1 THR J 346 -67.015 -0.405 54.935 1.00 93.81 ATOM 162 CG2 THR J 346 -67.975 1.416 53.688 1.00 87.03 ATOM 163 ZN ZN J 501 -73.143 8.423 52.751 1.00147.10 TER