HEADER DNA BINDING PROTEIN 31-DEC-69 5YEG TITLE Crystal structure of CTCF ZFs4-8-Hs5-1a complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.00 ANGSTORMS DBREF 5YEG A 349 490 UNP P49711 CTCF_HUMAN 349 490 SEQRES 1 A 32 GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS ALA ARG SEQRES 2 A 32 PHE THR GLN SER GLY THR MET LYS MET HIS ILE LEU GLN SEQRES 3 A 32 LYS HIS THR GLU ASN VAL ATOM 1 N GLY A 403 30.983 -28.005 -2.692 1.00 44.44 ATOM 2 CA GLY A 403 32.114 -27.307 -2.130 1.00 43.16 ATOM 3 C GLY A 403 32.685 -26.278 -3.079 1.00 44.38 ATOM 4 O GLY A 403 33.740 -25.704 -2.794 1.00 43.41 ATOM 5 N GLU A 404 32.018 -26.044 -4.208 1.00 31.14 ATOM 6 CA GLU A 404 32.469 -25.072 -5.193 1.00 28.47 ATOM 7 C GLU A 404 32.412 -23.658 -4.608 1.00 29.44 ATOM 8 O GLU A 404 31.341 -23.188 -4.218 1.00 25.12 ATOM 9 CB GLU A 404 31.596 -25.177 -6.447 1.00 28.27 ATOM 10 CG GLU A 404 32.288 -24.671 -7.714 1.00 36.47 ATOM 11 CD GLU A 404 31.371 -24.570 -8.937 1.00 40.39 ATOM 12 OE1 GLU A 404 30.333 -25.278 -9.008 1.00 40.62 ATOM 13 OE2 GLU A 404 31.703 -23.769 -9.841 1.00 44.75 ATOM 14 N LYS A 405 33.562 -22.978 -4.553 1.00 31.30 ATOM 15 CA LYS A 405 33.658 -21.579 -4.122 1.00 25.69 ATOM 16 C LYS A 405 34.329 -20.768 -5.227 1.00 28.53 ATOM 17 O LYS A 405 35.559 -20.594 -5.237 1.00 28.77 ATOM 18 CB LYS A 405 34.394 -21.428 -2.791 1.00 27.60 ATOM 19 CG LYS A 405 33.642 -22.060 -1.622 1.00 29.45 ATOM 20 CD LYS A 405 34.360 -21.850 -0.307 1.00 27.84 ATOM 21 CE LYS A 405 33.749 -22.727 0.784 1.00 33.80 ATOM 22 NZ LYS A 405 34.458 -22.586 2.098 1.00 39.85 ATOM 23 N PRO A 406 33.553 -20.293 -6.203 1.00 28.07 ATOM 24 CA PRO A 406 34.151 -19.695 -7.407 1.00 27.58 ATOM 25 C PRO A 406 34.733 -18.307 -7.210 1.00 30.46 ATOM 26 O PRO A 406 35.390 -17.810 -8.134 1.00 29.88 ATOM 27 CB PRO A 406 32.977 -19.652 -8.403 1.00 28.22 ATOM 28 CG PRO A 406 31.898 -20.553 -7.798 1.00 28.83 ATOM 29 CD PRO A 406 32.092 -20.435 -6.319 1.00 27.30 ATOM 30 N TYR A 407 34.542 -17.670 -6.055 1.00 25.63 ATOM 31 CA TYR A 407 34.874 -16.263 -5.878 1.00 26.50 ATOM 32 C TYR A 407 35.939 -16.097 -4.805 1.00 29.13 ATOM 33 O TYR A 407 35.854 -16.721 -3.743 1.00 28.30 ATOM 34 CB TYR A 407 33.619 -15.468 -5.525 1.00 24.50 ATOM 35 CG TYR A 407 32.549 -15.702 -6.571 1.00 25.41 ATOM 36 CD1 TYR A 407 32.627 -15.075 -7.814 1.00 25.20 ATOM 37 CD2 TYR A 407 31.500 -16.582 -6.338 1.00 23.78 ATOM 38 CE1 TYR A 407 31.686 -15.305 -8.795 1.00 25.82 ATOM 39 CE2 TYR A 407 30.532 -16.818 -7.320 1.00 23.75 ATOM 40 CZ TYR A 407 30.640 -16.178 -8.550 1.00 24.95 ATOM 41 OH TYR A 407 29.706 -16.386 -9.538 1.00 26.51 ATOM 42 N GLU A 408 36.929 -15.250 -5.079 1.00 28.13 ATOM 43 CA GLU A 408 38.059 -15.049 -4.182 1.00 30.96 ATOM 44 C GLU A 408 38.288 -13.558 -3.990 1.00 29.37 ATOM 45 O GLU A 408 38.409 -12.818 -4.973 1.00 27.94 ATOM 46 CB GLU A 408 39.333 -15.717 -4.728 1.00 31.78 ATOM 47 CG GLU A 408 40.587 -15.339 -3.946 1.00 34.77 ATOM 48 CD GLU A 408 41.844 -16.077 -4.397 1.00 38.87 ATOM 49 OE1 GLU A 408 41.774 -16.907 -5.329 1.00 40.93 ATOM 50 OE2 GLU A 408 42.919 -15.788 -3.829 1.00 39.60 ATOM 51 N CYS A 409 38.326 -13.116 -2.728 1.00 26.36 ATOM 52 CA CYS A 409 38.603 -11.715 -2.436 1.00 27.59 ATOM 53 C CYS A 409 40.017 -11.386 -2.898 1.00 30.11 ATOM 54 O CYS A 409 40.978 -12.022 -2.458 1.00 31.31 ATOM 55 CB CYS A 409 38.451 -11.430 -0.943 1.00 26.84 ATOM 56 SG CYS A 409 38.991 -9.779 -0.439 1.00 24.56 ATOM 57 N TYR A 410 40.149 -10.425 -3.810 1.00 28.96 ATOM 58 CA TYR A 410 41.477 -10.123 -4.341 1.00 33.21 ATOM 59 C TYR A 410 42.378 -9.466 -3.311 1.00 34.67 ATOM 60 O TYR A 410 43.599 -9.439 -3.500 1.00 36.42 ATOM 61 CB TYR A 410 41.373 -9.246 -5.580 1.00 33.13 ATOM 62 CG TYR A 410 41.064 -7.799 -5.291 1.00 33.32 ATOM 63 CD1 TYR A 410 39.750 -7.375 -5.104 1.00 33.96 ATOM 64 CD2 TYR A 410 42.074 -6.847 -5.251 1.00 35.99 ATOM 65 CE1 TYR A 410 39.455 -6.041 -4.855 1.00 32.74 ATOM 66 CE2 TYR A 410 41.791 -5.515 -5.001 1.00 35.04 ATOM 67 CZ TYR A 410 40.487 -5.117 -4.814 1.00 32.72 ATOM 68 OH TYR A 410 40.214 -3.791 -4.569 1.00 34.67 ATOM 69 N ILE A 411 41.811 -8.946 -2.227 1.00 32.95 ATOM 70 CA ILE A 411 42.624 -8.311 -1.199 1.00 32.60 ATOM 71 C ILE A 411 43.161 -9.344 -0.219 1.00 33.37 ATOM 72 O ILE A 411 44.364 -9.384 0.057 1.00 33.94 ATOM 73 CB ILE A 411 41.814 -7.207 -0.497 1.00 30.05 ATOM 74 CG1 ILE A 411 41.606 -6.051 -1.475 1.00 30.01 ATOM 75 CG2 ILE A 411 42.512 -6.745 0.773 1.00 28.44 ATOM 76 CD1 ILE A 411 40.568 -5.046 -1.048 1.00 30.16 ATOM 77 N CYS A 412 42.290 -10.199 0.329 1.00 30.22 ATOM 78 CA CYS A 412 42.719 -11.100 1.389 1.00 30.41 ATOM 79 C CYS A 412 42.659 -12.566 0.994 1.00 31.71 ATOM 80 O CYS A 412 43.068 -13.417 1.789 1.00 31.90 ATOM 81 CB CYS A 412 41.888 -10.883 2.661 1.00 29.53 ATOM 82 SG CYS A 412 40.279 -11.688 2.639 1.00 31.76 ATOM 83 N HIS A 413 42.114 -12.883 -0.180 1.00 31.67 ATOM 84 CA HIS A 413 42.074 -14.216 -0.783 1.00 33.88 ATOM 85 C HIS A 413 41.135 -15.181 -0.080 1.00 32.30 ATOM 86 O HIS A 413 41.154 -16.380 -0.386 1.00 33.29 ATOM 87 CB HIS A 413 43.482 -14.804 -0.877 1.00 33.97 ATOM 88 CG HIS A 413 44.453 -13.855 -1.489 1.00 34.73 ATOM 89 ND1 HIS A 413 44.423 -13.531 -2.828 1.00 35.05 ATOM 90 CD2 HIS A 413 45.426 -13.094 -0.936 1.00 35.13 ATOM 91 CE1 HIS A 413 45.368 -12.643 -3.082 1.00 36.45 ATOM 92 NE2 HIS A 413 45.990 -12.361 -1.951 1.00 37.47 ATOM 93 N ALA A 414 40.292 -14.702 0.831 1.00 30.96 ATOM 94 CA ALA A 414 39.205 -15.542 1.306 1.00 28.57 ATOM 95 C ALA A 414 38.317 -15.931 0.132 1.00 26.06 ATOM 96 O ALA A 414 38.165 -15.183 -0.838 1.00 27.20 ATOM 97 CB ALA A 414 38.395 -14.812 2.383 1.00 27.27 ATOM 98 N ARG A 415 37.700 -17.098 0.230 1.00 27.62 ATOM 99 CA ARG A 415 36.945 -17.635 -0.888 1.00 28.96 ATOM 100 C ARG A 415 35.477 -17.716 -0.503 1.00 26.05 ATOM 101 O ARG A 415 35.128 -17.923 0.665 1.00 26.43 ATOM 102 CB ARG A 415 37.452 -19.017 -1.318 1.00 31.07 ATOM 103 CG ARG A 415 38.845 -19.004 -1.928 1.00 33.59 ATOM 104 CD ARG A 415 39.131 -20.290 -2.695 1.00 39.86 ATOM 105 NE ARG A 415 38.396 -20.320 -3.966 1.00 42.20 ATOM 106 CZ ARG A 415 38.856 -19.799 -5.104 1.00 40.19 ATOM 107 NH1 ARG A 415 40.052 -19.219 -5.128 1.00 40.49 ATOM 108 NH2 ARG A 415 38.129 -19.852 -6.212 1.00 42.35 ATOM 109 N PHE A 416 34.619 -17.555 -1.503 1.00 25.82 ATOM 110 CA PHE A 416 33.196 -17.433 -1.261 1.00 23.50 ATOM 111 C PHE A 416 32.426 -18.245 -2.281 1.00 23.44 ATOM 112 O PHE A 416 32.841 -18.381 -3.434 1.00 22.91 ATOM 113 CB PHE A 416 32.737 -15.975 -1.323 1.00 22.95 ATOM 114 CG PHE A 416 33.418 -15.084 -0.328 1.00 22.41 ATOM 115 CD1 PHE A 416 32.870 -14.881 0.919 1.00 22.54 ATOM 116 CD2 PHE A 416 34.594 -14.434 -0.652 1.00 23.05 ATOM 117 CE1 PHE A 416 33.498 -14.032 1.847 1.00 23.25 ATOM 118 CE2 PHE A 416 35.219 -13.597 0.258 1.00 23.95 ATOM 119 CZ PHE A 416 34.670 -13.405 1.515 1.00 22.50 ATOM 120 N THR A 417 31.270 -18.751 -1.835 1.00 21.02 ATOM 121 CA THR A 417 30.396 -19.525 -2.698 1.00 21.08 ATOM 122 C THR A 417 29.576 -18.640 -3.623 1.00 21.87 ATOM 123 O THR A 417 29.325 -19.030 -4.769 1.00 22.22 ATOM 124 CB THR A 417 29.494 -20.399 -1.828 1.00 21.72 ATOM 125 OG1 THR A 417 30.322 -21.313 -1.102 1.00 23.68 ATOM 126 CG2 THR A 417 28.488 -21.178 -2.676 1.00 21.07 ATOM 127 N GLN A 418 29.253 -17.416 -3.197 1.00 20.57 ATOM 128 CA GLN A 418 28.446 -16.505 -3.999 1.00 21.69 ATOM 129 C GLN A 418 29.166 -15.174 -4.164 1.00 21.98 ATOM 130 O GLN A 418 29.938 -14.747 -3.300 1.00 21.62 ATOM 131 CB GLN A 418 27.066 -16.222 -3.375 1.00 19.33 ATOM 132 CG GLN A 418 26.173 -17.443 -3.205 1.00 20.41 ATOM 133 CD GLN A 418 24.810 -17.052 -2.672 1.00 20.33 ATOM 134 OE1 GLN A 418 24.500 -15.858 -2.554 1.00 19.71 ATOM 135 NE2 GLN A 418 23.999 -18.048 -2.320 1.00 19.43 ATOM 136 N SER A 419 28.853 -14.498 -5.267 1.00 22.00 ATOM 137 CA SER A 419 29.542 -13.260 -5.610 1.00 23.45 ATOM 138 C SER A 419 29.126 -12.097 -4.707 1.00 22.50 ATOM 139 O SER A 419 29.972 -11.285 -4.299 1.00 23.28 ATOM 140 CB SER A 419 29.267 -12.914 -7.069 1.00 24.83 ATOM 141 OG SER A 419 30.122 -11.857 -7.463 1.00 32.69 ATOM 142 N GLY A 420 27.834 -11.993 -4.384 1.00 21.17 ATOM 143 CA GLY A 420 27.391 -10.912 -3.515 1.00 20.04 ATOM 144 C GLY A 420 27.954 -10.995 -2.111 1.00 20.63 ATOM 145 O GLY A 420 28.228 -9.963 -1.485 1.00 19.03 ATOM 146 N THR A 421 28.122 -12.216 -1.588 1.00 20.15 ATOM 147 CA THR A 421 28.777 -12.393 -0.293 1.00 19.48 ATOM 148 C THR A 421 30.180 -11.796 -0.310 1.00 19.79 ATOM 149 O THR A 421 30.590 -11.110 0.638 1.00 19.49 ATOM 150 CB THR A 421 28.823 -13.880 0.053 1.00 19.81 ATOM 151 OG1 THR A 421 27.494 -14.438 -0.055 1.00 18.70 ATOM 152 CG2 THR A 421 29.344 -14.093 1.476 1.00 18.54 ATOM 153 N MET A 422 30.926 -12.041 -1.390 1.00 20.23 ATOM 154 CA MET A 422 32.276 -11.500 -1.495 1.00 21.05 ATOM 155 C MET A 422 32.246 -9.984 -1.605 1.00 19.50 ATOM 156 O MET A 422 33.026 -9.290 -0.936 1.00 20.10 ATOM 157 CB MET A 422 33.002 -12.104 -2.698 1.00 21.57 ATOM 158 CG MET A 422 34.359 -11.435 -2.989 1.00 25.20 ATOM 159 SD MET A 422 35.206 -12.096 -4.455 1.00 27.39 ATOM 160 CE MET A 422 34.197 -11.417 -5.758 1.00 22.97 ATOM 161 N LYS A 423 31.329 -9.456 -2.424 1.00 18.91 ATOM 162 CA LYS A 423 31.217 -8.008 -2.589 1.00 20.76 ATOM 163 C LYS A 423 30.939 -7.319 -1.256 1.00 20.72 ATOM 164 O LYS A 423 31.553 -6.291 -0.936 1.00 20.54 ATOM 165 CB LYS A 423 30.120 -7.713 -3.609 1.00 20.80 ATOM 166 CG LYS A 423 29.903 -6.274 -4.001 1.00 28.87 ATOM 167 CD LYS A 423 29.104 -6.251 -5.328 1.00 30.61 ATOM 168 CE LYS A 423 28.600 -4.856 -5.720 1.00 30.45 ATOM 169 NZ LYS A 423 27.739 -4.253 -4.670 1.00 30.56 ATOM 170 N MET A 424 30.012 -7.879 -0.467 1.00 19.56 ATOM 171 CA MET A 424 29.693 -7.340 0.856 1.00 19.69 ATOM 172 C MET A 424 30.886 -7.442 1.794 1.00 19.75 ATOM 173 O MET A 424 31.131 -6.540 2.603 1.00 19.76 ATOM 174 CB MET A 424 28.487 -8.091 1.447 1.00 18.79 ATOM 175 CG MET A 424 28.197 -7.758 2.893 1.00 18.97 ATOM 176 SD MET A 424 27.614 -6.054 2.982 1.00 21.96 ATOM 177 CE MET A 424 25.950 -6.302 2.322 1.00 22.26 ATOM 178 N HIS A 425 31.616 -8.557 1.720 1.00 19.23 ATOM 179 CA HIS A 425 32.839 -8.701 2.495 1.00 18.94 ATOM 180 C HIS A 425 33.844 -7.598 2.162 1.00 19.06 ATOM 181 O HIS A 425 34.431 -6.990 3.063 1.00 19.73 ATOM 182 CB HIS A 425 33.421 -10.089 2.231 1.00 19.52 ATOM 183 CG HIS A 425 34.868 -10.224 2.569 1.00 21.40 ATOM 184 ND1 HIS A 425 35.298 -10.659 3.804 1.00 21.65 ATOM 185 CD2 HIS A 425 35.986 -10.020 1.825 1.00 21.43 ATOM 186 CE1 HIS A 425 36.619 -10.709 3.811 1.00 22.28 ATOM 187 NE2 HIS A 425 37.059 -10.331 2.623 1.00 23.33 ATOM 188 N ILE A 426 34.038 -7.316 0.873 1.00 19.12 ATOM 189 CA ILE A 426 34.979 -6.279 0.464 1.00 22.03 ATOM 190 C ILE A 426 34.503 -4.906 0.921 1.00 21.27 ATOM 191 O ILE A 426 35.293 -4.097 1.431 1.00 21.08 ATOM 192 CB ILE A 426 35.182 -6.339 -1.059 1.00 21.31 ATOM 193 CG1 ILE A 426 35.952 -7.613 -1.412 1.00 21.62 ATOM 194 CG2 ILE A 426 35.905 -5.091 -1.540 1.00 22.65 ATOM 195 CD1 ILE A 426 35.979 -7.934 -2.896 1.00 23.15 ATOM 196 N LEU A 427 33.206 -4.626 0.763 1.00 20.64 ATOM 197 CA LEU A 427 32.658 -3.343 1.194 1.00 19.93 ATOM 198 C LEU A 427 32.838 -3.135 2.691 1.00 19.54 ATOM 199 O LEU A 427 33.233 -2.050 3.135 1.00 20.03 ATOM 200 CB LEU A 427 31.175 -3.254 0.828 1.00 22.24 ATOM 201 CG LEU A 427 30.498 -1.897 1.043 1.00 27.64 ATOM 202 CD1 LEU A 427 31.116 -0.844 0.111 1.00 29.16 ATOM 203 CD2 LEU A 427 28.993 -1.999 0.816 1.00 24.65 ATOM 204 N GLN A 428 32.564 -4.167 3.490 1.00 19.39 ATOM 205 CA GLN A 428 32.588 -3.957 4.930 1.00 20.12 ATOM 206 C GLN A 428 33.980 -4.084 5.539 1.00 20.44 ATOM 207 O GLN A 428 34.262 -3.419 6.533 1.00 22.14 ATOM 208 CB GLN A 428 31.636 -4.926 5.629 1.00 19.43 ATOM 209 CG GLN A 428 30.171 -4.770 5.232 1.00 19.69 ATOM 210 CD GLN A 428 29.606 -3.384 5.538 1.00 22.30 ATOM 211 OE1 GLN A 428 30.143 -2.636 6.360 1.00 20.44 ATOM 212 NE2 GLN A 428 28.476 -3.064 4.912 1.00 23.36 ATOM 213 N LYS A 429 34.852 -4.915 4.976 1.00 19.41 ATOM 214 CA LYS A 429 36.142 -5.191 5.596 1.00 22.06 ATOM 215 C LYS A 429 37.292 -4.406 4.992 1.00 22.16 ATOM 216 O LYS A 429 38.273 -4.171 5.697 1.00 25.50 ATOM 217 CB LYS A 429 36.510 -6.684 5.506 1.00 21.87 ATOM 218 CG LYS A 429 35.490 -7.674 6.052 1.00 23.53 ATOM 219 CD LYS A 429 35.181 -7.383 7.524 1.00 23.71 ATOM 220 CE LYS A 429 36.444 -7.370 8.371 1.00 28.12 ATOM 221 NZ LYS A 429 36.095 -7.277 9.829 1.00 30.27 ATOM 222 N HIS A 430 37.216 -4.013 3.710 1.00 20.52 ATOM 223 CA HIS A 430 38.363 -3.411 3.030 1.00 22.66 ATOM 224 C HIS A 430 38.060 -2.039 2.438 1.00 23.40 ATOM 225 O HIS A 430 38.784 -1.591 1.540 1.00 24.45 ATOM 226 CB HIS A 430 38.877 -4.312 1.906 1.00 20.94 ATOM 227 CG HIS A 430 39.146 -5.725 2.314 1.00 23.77 ATOM 228 ND1 HIS A 430 39.946 -6.056 3.387 1.00 23.92 ATOM 229 CD2 HIS A 430 38.778 -6.896 1.744 1.00 22.84 ATOM 230 CE1 HIS A 430 40.023 -7.372 3.486 1.00 25.34 ATOM 231 NE2 HIS A 430 39.327 -7.904 2.496 1.00 25.02 ATOM 232 N THR A 431 37.001 -1.369 2.884 1.00 22.10 ATOM 233 CA THR A 431 36.586 -0.105 2.286 1.00 20.44 ATOM 234 C THR A 431 36.293 0.866 3.413 1.00 20.15 ATOM 235 O THR A 431 35.651 0.481 4.386 1.00 21.28 ATOM 236 CB THR A 431 35.353 -0.293 1.398 1.00 19.96 ATOM 237 OG1 THR A 431 35.598 -1.360 0.482 1.00 20.51 ATOM 238 CG2 THR A 431 35.037 0.976 0.615 1.00 20.19 ATOM 239 N GLU A 432 36.771 2.102 3.304 1.00 17.82 ATOM 240 CA GLU A 432 36.538 3.091 4.344 1.00 20.16 ATOM 241 C GLU A 432 35.432 4.057 3.936 1.00 16.54 ATOM 242 O GLU A 432 35.142 4.236 2.754 1.00 18.17 ATOM 243 CB GLU A 432 37.831 3.863 4.656 1.00 19.24 ATOM 244 CG GLU A 432 38.931 2.935 5.179 1.00 19.86 ATOM 245 CD GLU A 432 40.102 3.683 5.829 1.00 24.39 ATOM 246 OE1 GLU A 432 40.133 4.933 5.766 1.00 19.86 ATOM 247 OE2 GLU A 432 40.981 3.001 6.401 1.00 27.23 ATOM 248 N ASN A 433 34.830 4.689 4.942 1.00 19.04 ATOM 249 CA ASN A 433 33.869 5.779 4.741 1.00 21.92 ATOM 250 C ASN A 433 32.647 5.331 3.929 1.00 24.03 ATOM 251 O ASN A 433 32.080 6.102 3.149 1.00 22.47 ATOM 252 CB ASN A 433 34.541 6.985 4.086 1.00 20.99 ATOM 253 CG ASN A 433 33.775 8.267 4.298 1.00 22.55 ATOM 254 OD1 ASN A 433 33.165 8.469 5.341 1.00 23.31 ATOM 255 ND2 ASN A 433 33.802 9.141 3.298 1.00 22.18 ATOM 256 N VAL A 434 32.213 4.083 4.130 1.00 18.05 ATOM 257 CA VAL A 434 30.965 3.630 3.517 1.00 19.70 ATOM 258 C VAL A 434 29.773 4.221 4.272 1.00 21.21 ATOM 259 O VAL A 434 29.790 4.321 5.499 1.00 22.12 ATOM 260 CB VAL A 434 30.906 2.092 3.483 1.00 22.30 ATOM 261 CG1 VAL A 434 29.604 1.631 2.824 1.00 22.04 ATOM 262 CG2 VAL A 434 32.116 1.520 2.724 1.00 20.66 ATOM 263 ZN ZN A 502 38.989 -9.923 1.754 1.00 25.26 TER