HEADER DNA BINDING PROTEIN 31-DEC-69 5YEG TITLE Crystal structure of CTCF ZFs4-8-Hs5-1a complex COMPND MOL_ID: 2; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.00 ANGSTORMS DBREF 5YEG B 349 489 UNP P49711 CTCF_HUMAN 349 489 SEQRES 1 B 32 GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS ALA ARG SEQRES 2 B 32 PHE THR GLN SER GLY THR MET LYS MET HIS ILE LEU GLN SEQRES 3 B 32 LYS HIS THR GLU ASN VAL ATOM 1 N GLY B 403 20.337 4.405 1.392 1.00 15.78 ATOM 2 CA GLY B 403 19.298 3.763 0.604 1.00 16.13 ATOM 3 C GLY B 403 18.243 2.955 1.340 1.00 16.16 ATOM 4 O GLY B 403 17.478 2.249 0.678 1.00 16.67 ATOM 5 N GLU B 404 18.156 3.026 2.674 1.00 14.43 ATOM 6 CA GLU B 404 17.149 2.188 3.333 1.00 18.56 ATOM 7 C GLU B 404 15.749 2.775 3.148 1.00 16.85 ATOM 8 O GLU B 404 15.580 3.973 2.901 1.00 16.10 ATOM 9 CB GLU B 404 17.426 2.044 4.826 1.00 19.75 ATOM 10 CG GLU B 404 17.190 3.318 5.604 1.00 17.81 ATOM 11 CD GLU B 404 18.390 4.250 5.599 1.00 22.50 ATOM 12 OE1 GLU B 404 19.319 4.057 4.764 1.00 23.88 ATOM 13 OE2 GLU B 404 18.415 5.168 6.453 1.00 24.35 ATOM 14 N LYS B 405 14.734 1.917 3.304 1.00 19.51 ATOM 15 CA LYS B 405 13.327 2.318 3.206 1.00 19.37 ATOM 16 C LYS B 405 12.621 1.830 4.472 1.00 21.96 ATOM 17 O LYS B 405 11.997 0.763 4.477 1.00 22.73 ATOM 18 CB LYS B 405 12.702 1.734 1.939 1.00 23.42 ATOM 19 CG LYS B 405 13.402 2.240 0.679 1.00 22.10 ATOM 20 CD LYS B 405 12.848 1.586 -0.588 1.00 30.72 ATOM 21 CE LYS B 405 13.826 1.815 -1.745 1.00 38.65 ATOM 22 NZ LYS B 405 13.426 1.126 -3.005 1.00 49.58 ATOM 23 N PRO B 406 12.727 2.580 5.570 1.00 19.98 ATOM 24 CA PRO B 406 12.262 2.075 6.876 1.00 20.89 ATOM 25 C PRO B 406 10.747 2.023 7.036 1.00 22.15 ATOM 26 O PRO B 406 10.282 1.538 8.073 1.00 23.14 ATOM 27 CB PRO B 406 12.864 3.077 7.881 1.00 21.48 ATOM 28 CG PRO B 406 13.883 3.856 7.129 1.00 20.82 ATOM 29 CD PRO B 406 13.374 3.887 5.697 1.00 20.00 ATOM 30 N TYR B 407 9.963 2.521 6.083 1.00 19.94 ATOM 31 CA TYR B 407 8.519 2.659 6.243 1.00 20.93 ATOM 32 C TYR B 407 7.833 1.718 5.269 1.00 21.68 ATOM 33 O TYR B 407 8.239 1.627 4.111 1.00 21.79 ATOM 34 CB TYR B 407 8.083 4.112 6.019 1.00 18.72 ATOM 35 CG TYR B 407 8.778 4.999 6.999 1.00 20.35 ATOM 36 CD1 TYR B 407 8.319 5.098 8.319 1.00 21.50 ATOM 37 CD2 TYR B 407 9.942 5.669 6.648 1.00 19.65 ATOM 38 CE1 TYR B 407 8.995 5.887 9.252 1.00 23.50 ATOM 39 CE2 TYR B 407 10.617 6.446 7.563 1.00 18.96 ATOM 40 CZ TYR B 407 10.144 6.552 8.864 1.00 20.43 ATOM 41 OH TYR B 407 10.826 7.343 9.769 1.00 21.48 ATOM 42 N GLU B 408 6.810 1.003 5.744 1.00 21.93 ATOM 43 CA GLU B 408 6.180 -0.044 4.954 1.00 22.82 ATOM 44 C GLU B 408 4.667 0.118 4.981 1.00 22.86 ATOM 45 O GLU B 408 4.065 0.191 6.059 1.00 21.68 ATOM 46 CB GLU B 408 6.571 -1.426 5.487 1.00 28.09 ATOM 47 CG GLU B 408 5.811 -2.572 4.823 1.00 29.05 ATOM 48 CD GLU B 408 6.280 -3.947 5.284 1.00 32.73 ATOM 49 OE1 GLU B 408 7.178 -4.023 6.150 1.00 36.75 ATOM 50 OE2 GLU B 408 5.765 -4.956 4.757 1.00 33.19 ATOM 51 N CYS B 409 4.055 0.173 3.802 1.00 22.49 ATOM 52 CA CYS B 409 2.601 0.251 3.749 1.00 24.04 ATOM 53 C CYS B 409 2.023 -1.021 4.361 1.00 23.72 ATOM 54 O CYS B 409 2.324 -2.128 3.911 1.00 25.76 ATOM 55 CB CYS B 409 2.118 0.428 2.313 1.00 22.42 ATOM 56 SG CYS B 409 0.321 0.219 2.136 1.00 19.94 ATOM 57 N TYR B 410 1.221 -0.863 5.410 1.00 24.85 ATOM 58 CA TYR B 410 0.711 -2.039 6.104 1.00 27.22 ATOM 59 C TYR B 410 -0.252 -2.855 5.239 1.00 28.94 ATOM 60 O TYR B 410 -0.539 -4.013 5.571 1.00 28.87 ATOM 61 CB TYR B 410 0.037 -1.625 7.415 1.00 27.07 ATOM 62 CG TYR B 410 -1.369 -1.063 7.271 1.00 27.04 ATOM 63 CD1 TYR B 410 -1.586 0.277 6.981 1.00 25.46 ATOM 64 CD2 TYR B 410 -2.480 -1.880 7.459 1.00 28.41 ATOM 65 CE1 TYR B 410 -2.882 0.785 6.856 1.00 26.19 ATOM 66 CE2 TYR B 410 -3.772 -1.384 7.344 1.00 27.50 ATOM 67 CZ TYR B 410 -3.968 -0.055 7.049 1.00 27.44 ATOM 68 OH TYR B 410 -5.255 0.428 6.929 1.00 26.57 ATOM 69 N ILE B 411 -0.766 -2.284 4.153 1.00 25.86 ATOM 70 CA ILE B 411 -1.713 -3.006 3.292 1.00 28.15 ATOM 71 C ILE B 411 -1.003 -3.800 2.197 1.00 29.44 ATOM 72 O ILE B 411 -1.201 -5.011 2.066 1.00 28.89 ATOM 73 CB ILE B 411 -2.742 -2.012 2.709 1.00 25.65 ATOM 74 CG1 ILE B 411 -3.649 -1.473 3.827 1.00 25.40 ATOM 75 CG2 ILE B 411 -3.563 -2.657 1.586 1.00 25.41 ATOM 76 CD1 ILE B 411 -4.449 -0.252 3.408 1.00 22.47 ATOM 77 N CYS B 412 -0.141 -3.161 1.403 1.00 26.86 ATOM 78 CA CYS B 412 0.441 -3.812 0.237 1.00 26.54 ATOM 79 C CYS B 412 1.939 -4.054 0.365 1.00 27.73 ATOM 80 O CYS B 412 2.531 -4.666 -0.535 1.00 27.99 ATOM 81 CB CYS B 412 0.157 -2.993 -1.027 1.00 32.12 ATOM 82 SG CYS B 412 1.214 -1.560 -1.227 1.00 27.87 ATOM 83 N HIS B 413 2.563 -3.550 1.436 1.00 26.79 ATOM 84 CA HIS B 413 3.944 -3.805 1.830 1.00 27.07 ATOM 85 C HIS B 413 4.975 -3.118 0.943 1.00 25.33 ATOM 86 O HIS B 413 6.167 -3.421 1.055 1.00 26.37 ATOM 87 CB HIS B 413 4.210 -5.312 1.917 1.00 29.30 ATOM 88 CG HIS B 413 3.202 -6.040 2.753 1.00 30.83 ATOM 89 ND1 HIS B 413 3.134 -5.903 4.125 1.00 29.40 ATOM 90 CD2 HIS B 413 2.197 -6.884 2.411 1.00 32.00 ATOM 91 CE1 HIS B 413 2.146 -6.642 4.594 1.00 32.31 ATOM 92 NE2 HIS B 413 1.563 -7.250 3.575 1.00 32.64 ATOM 93 N ALA B 414 4.553 -2.185 0.091 1.00 24.42 ATOM 94 CA ALA B 414 5.487 -1.270 -0.542 1.00 23.34 ATOM 95 C ALA B 414 6.245 -0.484 0.530 1.00 22.80 ATOM 96 O ALA B 414 5.758 -0.281 1.640 1.00 22.34 ATOM 97 CB ALA B 414 4.747 -0.316 -1.472 1.00 22.07 ATOM 98 N ARG B 415 7.462 -0.073 0.196 1.00 21.54 ATOM 99 CA ARG B 415 8.375 0.528 1.160 1.00 22.52 ATOM 100 C ARG B 415 8.757 1.944 0.732 1.00 19.87 ATOM 101 O ARG B 415 8.760 2.271 -0.462 1.00 19.63 ATOM 102 CB ARG B 415 9.594 -0.392 1.326 1.00 23.40 ATOM 103 CG ARG B 415 9.208 -1.716 2.013 1.00 25.75 ATOM 104 CD ARG B 415 10.417 -2.517 2.457 1.00 31.73 ATOM 105 NE ARG B 415 11.087 -1.912 3.596 1.00 31.24 ATOM 106 CZ ARG B 415 10.774 -2.131 4.868 1.00 32.66 ATOM 107 NH1 ARG B 415 9.789 -2.960 5.183 1.00 35.54 ATOM 108 NH2 ARG B 415 11.461 -1.522 5.827 1.00 28.40 ATOM 109 N PHE B 416 9.050 2.803 1.715 1.00 19.23 ATOM 110 CA PHE B 416 9.259 4.224 1.459 1.00 20.18 ATOM 111 C PHE B 416 10.427 4.737 2.299 1.00 18.84 ATOM 112 O PHE B 416 10.726 4.175 3.350 1.00 18.47 ATOM 113 CB PHE B 416 7.965 4.982 1.765 1.00 19.19 ATOM 114 CG PHE B 416 6.786 4.433 1.006 1.00 18.73 ATOM 115 CD1 PHE B 416 6.016 3.405 1.548 1.00 18.42 ATOM 116 CD2 PHE B 416 6.500 4.882 -0.280 1.00 19.84 ATOM 117 CE1 PHE B 416 4.958 2.854 0.816 1.00 20.55 ATOM 118 CE2 PHE B 416 5.427 4.341 -1.010 1.00 18.65 ATOM 119 CZ PHE B 416 4.668 3.331 -0.458 1.00 20.06 ATOM 120 N THR B 417 11.101 5.794 1.824 1.00 16.68 ATOM 121 CA THR B 417 12.195 6.365 2.613 1.00 17.70 ATOM 122 C THR B 417 11.692 7.240 3.757 1.00 17.92 ATOM 123 O THR B 417 12.451 7.491 4.707 1.00 17.30 ATOM 124 CB THR B 417 13.170 7.189 1.748 1.00 16.39 ATOM 125 OG1 THR B 417 12.559 8.410 1.316 1.00 14.34 ATOM 126 CG2 THR B 417 13.644 6.413 0.549 1.00 16.24 ATOM 127 N GLN B 418 10.470 7.779 3.649 1.00 16.36 ATOM 128 CA GLN B 418 9.912 8.683 4.650 1.00 16.91 ATOM 129 C GLN B 418 8.466 8.311 4.997 1.00 17.25 ATOM 130 O GLN B 418 7.736 7.728 4.187 1.00 14.80 ATOM 131 CB GLN B 418 9.977 10.140 4.168 1.00 16.99 ATOM 132 CG GLN B 418 11.391 10.674 3.889 1.00 15.47 ATOM 133 CD GLN B 418 11.377 12.158 3.477 1.00 18.80 ATOM 134 OE1 GLN B 418 10.322 12.813 3.486 1.00 16.29 ATOM 135 NE2 GLN B 418 12.538 12.687 3.132 1.00 17.18 ATOM 136 N SER B 419 8.042 8.693 6.209 1.00 17.31 ATOM 137 CA SER B 419 6.720 8.289 6.687 1.00 18.53 ATOM 138 C SER B 419 5.598 9.053 5.986 1.00 17.92 ATOM 139 O SER B 419 4.539 8.482 5.703 1.00 17.93 ATOM 140 CB SER B 419 6.627 8.481 8.204 1.00 20.51 ATOM 141 OG SER B 419 5.459 7.840 8.708 1.00 23.81 ATOM 142 N GLY B 420 5.791 10.350 5.734 1.00 17.83 ATOM 143 CA GLY B 420 4.775 11.107 5.018 1.00 16.28 ATOM 144 C GLY B 420 4.566 10.598 3.601 1.00 16.94 ATOM 145 O GLY B 420 3.448 10.608 3.082 1.00 18.21 ATOM 146 N THR B 421 5.639 10.134 2.959 1.00 17.47 ATOM 147 CA THR B 421 5.494 9.505 1.645 1.00 16.29 ATOM 148 C THR B 421 4.570 8.298 1.714 1.00 17.93 ATOM 149 O THR B 421 3.726 8.092 0.828 1.00 18.22 ATOM 150 CB THR B 421 6.857 9.074 1.116 1.00 18.22 ATOM 151 OG1 THR B 421 7.764 10.181 1.182 1.00 17.86 ATOM 152 CG2 THR B 421 6.723 8.600 -0.339 1.00 17.37 ATOM 153 N MET B 422 4.738 7.470 2.747 1.00 17.34 ATOM 154 CA MET B 422 3.886 6.292 2.896 1.00 18.54 ATOM 155 C MET B 422 2.447 6.698 3.147 1.00 18.40 ATOM 156 O MET B 422 1.515 6.079 2.611 1.00 19.88 ATOM 157 CB MET B 422 4.401 5.408 4.033 1.00 17.52 ATOM 158 CG MET B 422 3.434 4.278 4.443 1.00 19.03 ATOM 159 SD MET B 422 4.130 3.348 5.806 1.00 24.08 ATOM 160 CE MET B 422 3.960 4.550 7.127 1.00 21.51 ATOM 161 N LYS B 423 2.251 7.710 3.993 1.00 18.15 ATOM 162 CA LYS B 423 0.904 8.204 4.262 1.00 20.20 ATOM 163 C LYS B 423 0.214 8.655 2.978 1.00 19.93 ATOM 164 O LYS B 423 -0.969 8.356 2.758 1.00 19.38 ATOM 165 CB LYS B 423 0.985 9.346 5.271 1.00 20.40 ATOM 166 CG LYS B 423 -0.337 9.941 5.712 1.00 22.53 ATOM 167 CD LYS B 423 -0.139 10.722 7.006 1.00 24.54 ATOM 168 CE LYS B 423 -1.361 11.559 7.333 1.00 29.10 ATOM 169 NZ LYS B 423 -1.665 12.503 6.217 1.00 29.24 ATOM 170 N MET B 424 0.940 9.388 2.122 1.00 18.35 ATOM 171 CA MET B 424 0.375 9.823 0.841 1.00 17.88 ATOM 172 C MET B 424 0.086 8.636 -0.063 1.00 19.63 ATOM 173 O MET B 424 -0.933 8.616 -0.766 1.00 19.41 ATOM 174 CB MET B 424 1.334 10.807 0.151 1.00 20.12 ATOM 175 CG MET B 424 0.960 11.160 -1.303 1.00 21.85 ATOM 176 SD MET B 424 -0.535 12.170 -1.418 1.00 23.65 ATOM 177 CE MET B 424 0.063 13.808 -0.953 1.00 23.96 ATOM 178 N HIS B 425 0.985 7.645 -0.083 1.00 18.04 ATOM 179 CA HIS B 425 0.720 6.433 -0.852 1.00 18.95 ATOM 180 C HIS B 425 -0.580 5.765 -0.403 1.00 20.64 ATOM 181 O HIS B 425 -1.391 5.331 -1.230 1.00 21.01 ATOM 182 CB HIS B 425 1.894 5.465 -0.704 1.00 20.52 ATOM 183 CG HIS B 425 1.557 4.054 -1.055 1.00 20.30 ATOM 184 ND1 HIS B 425 1.781 3.530 -2.309 1.00 20.67 ATOM 185 CD2 HIS B 425 0.976 3.066 -0.327 1.00 20.53 ATOM 186 CE1 HIS B 425 1.379 2.270 -2.331 1.00 22.29 ATOM 187 NE2 HIS B 425 0.894 1.964 -1.141 1.00 21.08 ATOM 188 N ILE B 426 -0.793 5.670 0.908 1.00 18.39 ATOM 189 CA ILE B 426 -2.014 5.037 1.401 1.00 20.81 ATOM 190 C ILE B 426 -3.231 5.859 0.998 1.00 21.49 ATOM 191 O ILE B 426 -4.261 5.315 0.563 1.00 22.16 ATOM 192 CB ILE B 426 -1.925 4.820 2.922 1.00 19.54 ATOM 193 CG1 ILE B 426 -0.882 3.731 3.216 1.00 20.61 ATOM 194 CG2 ILE B 426 -3.306 4.396 3.474 1.00 21.85 ATOM 195 CD1 ILE B 426 -0.482 3.605 4.673 1.00 20.63 ATOM 196 N LEU B 427 -3.113 7.183 1.100 1.00 19.75 ATOM 197 CA LEU B 427 -4.207 8.069 0.714 1.00 20.86 ATOM 198 C LEU B 427 -4.585 7.890 -0.753 1.00 23.32 ATOM 199 O LEU B 427 -5.770 7.891 -1.097 1.00 23.62 ATOM 200 CB LEU B 427 -3.812 9.518 0.983 1.00 20.84 ATOM 201 CG LEU B 427 -4.903 10.568 0.782 1.00 22.81 ATOM 202 CD1 LEU B 427 -6.050 10.353 1.762 1.00 22.34 ATOM 203 CD2 LEU B 427 -4.304 11.950 0.960 1.00 24.13 ATOM 204 N GLN B 428 -3.590 7.768 -1.639 1.00 22.69 ATOM 205 CA GLN B 428 -3.877 7.726 -3.066 1.00 23.25 ATOM 206 C GLN B 428 -4.252 6.329 -3.555 1.00 24.85 ATOM 207 O GLN B 428 -5.005 6.210 -4.520 1.00 26.44 ATOM 208 CB GLN B 428 -2.668 8.247 -3.863 1.00 23.44 ATOM 209 CG GLN B 428 -2.303 9.680 -3.531 1.00 23.28 ATOM 210 CD GLN B 428 -3.432 10.669 -3.824 1.00 26.19 ATOM 211 OE1 GLN B 428 -4.287 10.422 -4.665 1.00 26.57 ATOM 212 NE2 GLN B 428 -3.457 11.770 -3.091 1.00 25.76 ATOM 213 N LYS B 429 -3.726 5.268 -2.946 1.00 22.27 ATOM 214 CA LYS B 429 -3.949 3.928 -3.475 1.00 25.24 ATOM 215 C LYS B 429 -4.969 3.093 -2.697 1.00 25.13 ATOM 216 O LYS B 429 -5.536 2.165 -3.275 1.00 26.38 ATOM 217 CB LYS B 429 -2.633 3.145 -3.530 1.00 25.86 ATOM 218 CG LYS B 429 -1.485 3.889 -4.213 1.00 27.66 ATOM 219 CD LYS B 429 -1.839 4.297 -5.628 1.00 33.16 ATOM 220 CE LYS B 429 -2.241 3.093 -6.467 1.00 35.40 ATOM 221 NZ LYS B 429 -2.474 3.457 -7.901 1.00 36.63 ATOM 222 N HIS B 430 -5.179 3.339 -1.399 1.00 22.24 ATOM 223 CA HIS B 430 -5.993 2.447 -0.567 1.00 22.78 ATOM 224 C HIS B 430 -7.137 3.162 0.145 1.00 21.42 ATOM 225 O HIS B 430 -7.670 2.639 1.123 1.00 23.30 ATOM 226 CB HIS B 430 -5.119 1.734 0.471 1.00 22.14 ATOM 227 CG HIS B 430 -3.952 1.002 -0.110 1.00 24.29 ATOM 228 ND1 HIS B 430 -4.092 0.031 -1.079 1.00 25.00 ATOM 229 CD2 HIS B 430 -2.616 1.124 0.111 1.00 22.60 ATOM 230 CE1 HIS B 430 -2.900 -0.438 -1.404 1.00 25.25 ATOM 231 NE2 HIS B 430 -1.989 0.216 -0.707 1.00 26.27 ATOM 232 N THR B 431 -7.556 4.328 -0.322 1.00 21.94 ATOM 233 CA THR B 431 -8.529 5.112 0.426 1.00 22.89 ATOM 234 C THR B 431 -9.667 5.542 -0.490 1.00 23.68 ATOM 235 O THR B 431 -9.420 5.986 -1.613 1.00 23.82 ATOM 236 CB THR B 431 -7.859 6.346 1.047 1.00 22.44 ATOM 237 OG1 THR B 431 -6.693 5.941 1.780 1.00 22.34 ATOM 238 CG2 THR B 431 -8.830 7.055 1.990 1.00 23.21 ATOM 239 N GLU B 432 -10.907 5.420 -0.011 1.00 20.85 ATOM 240 CA GLU B 432 -12.060 5.884 -0.772 1.00 23.31 ATOM 241 C GLU B 432 -12.418 7.304 -0.348 1.00 20.95 ATOM 242 O GLU B 432 -11.980 7.797 0.698 1.00 20.73 ATOM 243 CB GLU B 432 -13.286 4.977 -0.564 1.00 22.29 ATOM 244 CG GLU B 432 -13.132 3.576 -1.158 1.00 24.75 ATOM 245 CD GLU B 432 -14.448 2.791 -1.234 1.00 36.34 ATOM 246 OE1 GLU B 432 -15.454 3.269 -0.664 1.00 36.21 ATOM 247 OE2 GLU B 432 -14.485 1.703 -1.865 1.00 42.13 ATOM 248 N ASN B 433 -13.215 7.959 -1.190 1.00 20.74 ATOM 249 CA ASN B 433 -13.821 9.244 -0.867 1.00 21.76 ATOM 250 C ASN B 433 -12.796 10.365 -0.730 1.00 24.56 ATOM 251 O ASN B 433 -13.052 11.358 -0.053 1.00 24.72 ATOM 252 CB ASN B 433 -14.661 9.145 0.411 1.00 22.39 ATOM 253 CG ASN B 433 -15.797 8.149 0.270 1.00 24.44 ATOM 254 OD1 ASN B 433 -15.854 7.129 0.962 1.00 24.28 ATOM 255 ND2 ASN B 433 -16.675 8.423 -0.658 1.00 18.18 ATOM 256 N VAL B 434 -11.632 10.252 -1.361 1.00 24.88 ATOM 257 CA VAL B 434 -10.643 11.326 -1.281 1.00 26.07 ATOM 258 C VAL B 434 -10.974 12.370 -2.339 1.00 24.11 ATOM 259 O VAL B 434 -11.127 12.049 -3.518 1.00 24.77 ATOM 260 CB VAL B 434 -9.220 10.777 -1.462 1.00 27.91 ATOM 261 CG1 VAL B 434 -8.183 11.913 -1.355 1.00 29.32 ATOM 262 CG2 VAL B 434 -8.956 9.685 -0.415 1.00 25.73 ATOM 263 ZN ZN B 502 0.155 0.187 -0.172 1.00 23.48 TER