HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEH TITLE Crystal struture of CTCF ZFs4-8-eCBS COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.33 ANGSTORMS DBREF 5YEH B 349 490 UNP P49711 CTCF_HUMAN 349 490 SEQRES 1 B 32 GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS ALA ARG SEQRES 2 B 32 PHE THR GLN SER GLY THR MET LYS MET HIS ILE LEU GLN SEQRES 3 B 32 LYS HIS THR GLU ASN VAL ATOM 1 N GLY B 403 21.823 5.095 1.540 1.00 40.61 ATOM 2 CA GLY B 403 20.871 4.510 0.616 1.00 37.59 ATOM 3 C GLY B 403 19.908 3.491 1.183 1.00 37.36 ATOM 4 O GLY B 403 19.513 2.575 0.464 1.00 47.14 ATOM 5 N GLU B 404 19.506 3.630 2.446 1.00 55.93 ATOM 6 CA GLU B 404 18.518 2.743 3.051 1.00 44.38 ATOM 7 C GLU B 404 17.105 3.318 2.883 1.00 32.90 ATOM 8 O GLU B 404 16.896 4.528 2.797 1.00 38.67 ATOM 9 CB GLU B 404 18.778 2.518 4.542 1.00 42.60 ATOM 10 CG GLU B 404 18.386 3.673 5.430 1.00 50.75 ATOM 11 CD GLU B 404 19.577 4.480 5.859 1.00 68.97 ATOM 12 OE1 GLU B 404 20.531 4.554 5.063 1.00 79.74 ATOM 13 OE2 GLU B 404 19.567 5.032 6.981 1.00 65.87 ATOM 14 N LYS B 405 16.130 2.420 2.844 1.00 36.76 ATOM 15 CA LYS B 405 14.716 2.786 2.808 1.00 45.63 ATOM 16 C LYS B 405 14.063 2.192 4.056 1.00 40.48 ATOM 17 O LYS B 405 13.579 1.055 4.029 1.00 45.28 ATOM 18 CB LYS B 405 14.049 2.298 1.519 1.00 41.87 ATOM 19 CG LYS B 405 14.982 2.314 0.314 1.00 43.03 ATOM 20 CD LYS B 405 14.272 2.721 -0.955 1.00 56.85 ATOM 21 CE LYS B 405 15.135 2.521 -2.187 1.00 55.61 ATOM 22 NZ LYS B 405 16.503 3.064 -1.971 1.00 70.73 ATOM 23 N PRO B 406 14.105 2.913 5.179 1.00 41.73 ATOM 24 CA PRO B 406 13.613 2.371 6.454 1.00 36.54 ATOM 25 C PRO B 406 12.112 2.523 6.691 1.00 48.16 ATOM 26 O PRO B 406 11.647 2.281 7.812 1.00 40.13 ATOM 27 CB PRO B 406 14.425 3.166 7.494 1.00 33.22 ATOM 28 CG PRO B 406 14.931 4.355 6.805 1.00 34.97 ATOM 29 CD PRO B 406 14.633 4.268 5.332 1.00 34.57 ATOM 30 N TYR B 407 11.307 2.953 5.724 1.00 41.89 ATOM 31 CA TYR B 407 9.865 3.053 5.970 1.00 31.71 ATOM 32 C TYR B 407 9.185 2.147 4.971 1.00 40.78 ATOM 33 O TYR B 407 9.476 2.201 3.764 1.00 39.97 ATOM 34 CB TYR B 407 9.353 4.484 5.837 1.00 29.60 ATOM 35 CG TYR B 407 9.987 5.439 6.805 1.00 41.08 ATOM 36 CD1 TYR B 407 9.476 5.606 8.102 1.00 30.37 ATOM 37 CD2 TYR B 407 11.150 6.112 6.457 1.00 39.94 ATOM 38 CE1 TYR B 407 10.056 6.478 8.986 1.00 31.44 ATOM 39 CE2 TYR B 407 11.771 6.964 7.351 1.00 39.03 ATOM 40 CZ TYR B 407 11.226 7.141 8.614 1.00 45.64 ATOM 41 OH TYR B 407 11.856 7.998 9.484 1.00 45.29 ATOM 42 N GLU B 408 8.272 1.324 5.471 1.00 30.58 ATOM 43 CA GLU B 408 7.705 0.258 4.672 1.00 39.86 ATOM 44 C GLU B 408 6.189 0.377 4.772 1.00 41.66 ATOM 45 O GLU B 408 5.649 0.440 5.878 1.00 40.44 ATOM 46 CB GLU B 408 8.190 -1.104 5.167 1.00 35.65 ATOM 47 CG GLU B 408 7.761 -2.273 4.308 1.00 57.80 ATOM 48 CD GLU B 408 8.377 -3.584 4.763 1.00 63.99 ATOM 49 OE1 GLU B 408 9.150 -3.572 5.747 1.00 75.35 ATOM 50 OE2 GLU B 408 8.139 -4.620 4.108 1.00 55.27 ATOM 51 N CYS B 409 5.517 0.412 3.616 1.00 41.51 ATOM 52 CA CYS B 409 4.056 0.479 3.566 1.00 34.72 ATOM 53 C CYS B 409 3.486 -0.794 4.178 1.00 37.55 ATOM 54 O CYS B 409 3.719 -1.896 3.670 1.00 34.30 ATOM 55 CB CYS B 409 3.575 0.661 2.107 1.00 24.90 ATOM 56 SG CYS B 409 1.664 0.562 1.774 1.00 31.13 ATOM 57 N TYR B 410 2.717 -0.646 5.256 1.00 39.09 ATOM 58 CA TYR B 410 2.242 -1.855 5.923 1.00 43.37 ATOM 59 C TYR B 410 1.215 -2.644 5.093 1.00 47.21 ATOM 60 O TYR B 410 0.755 -3.693 5.552 1.00 67.88 ATOM 61 CB TYR B 410 1.624 -1.523 7.284 1.00 47.75 ATOM 62 CG TYR B 410 0.243 -0.894 7.196 1.00 53.26 ATOM 63 CD1 TYR B 410 0.071 0.393 6.724 1.00 62.95 ATOM 64 CD2 TYR B 410 -0.889 -1.609 7.585 1.00 60.12 ATOM 65 CE1 TYR B 410 -1.182 0.960 6.636 1.00 64.32 ATOM 66 CE2 TYR B 410 -2.165 -1.050 7.509 1.00 56.33 ATOM 67 CZ TYR B 410 -2.304 0.236 7.029 1.00 57.04 ATOM 68 OH TYR B 410 -3.540 0.825 6.935 1.00 46.72 ATOM 69 N ILE B 411 0.853 -2.188 3.897 1.00 37.28 ATOM 70 CA ILE B 411 -0.143 -2.875 3.081 1.00 48.60 ATOM 71 C ILE B 411 0.505 -3.595 1.895 1.00 47.27 ATOM 72 O ILE B 411 0.237 -4.774 1.648 1.00 45.74 ATOM 73 CB ILE B 411 -1.218 -1.885 2.593 1.00 44.47 ATOM 74 CG1 ILE B 411 -2.010 -1.332 3.777 1.00 45.93 ATOM 75 CG2 ILE B 411 -2.117 -2.541 1.557 1.00 49.82 ATOM 76 CD1 ILE B 411 -3.008 -0.241 3.382 1.00 47.17 ATOM 77 N CYS B 412 1.355 -2.894 1.146 1.00 50.86 ATOM 78 CA CYS B 412 1.985 -3.454 -0.044 1.00 40.63 ATOM 79 C CYS B 412 3.496 -3.597 0.081 1.00 51.16 ATOM 80 O CYS B 412 4.146 -3.997 -0.892 1.00 45.47 ATOM 81 CB CYS B 412 1.653 -2.596 -1.259 1.00 44.04 ATOM 82 SG CYS B 412 2.691 -1.142 -1.412 1.00 46.31 ATOM 83 N HIS B 413 4.065 -3.257 1.243 1.00 47.82 ATOM 84 CA HIS B 413 5.466 -3.464 1.595 1.00 48.87 ATOM 85 C HIS B 413 6.443 -2.708 0.693 1.00 43.77 ATOM 86 O HIS B 413 7.644 -3.002 0.680 1.00 45.45 ATOM 87 CB HIS B 413 5.797 -4.957 1.647 1.00 52.79 ATOM 88 CG HIS B 413 4.892 -5.727 2.550 1.00 60.75 ATOM 89 ND1 HIS B 413 4.950 -5.617 3.923 1.00 75.85 ATOM 90 CD2 HIS B 413 3.903 -6.610 2.282 1.00 58.71 ATOM 91 CE1 HIS B 413 4.030 -6.398 4.461 1.00 74.64 ATOM 92 NE2 HIS B 413 3.382 -7.012 3.488 1.00 66.95 ATOM 93 N ALA B 414 5.961 -1.731 -0.061 1.00 32.87 ATOM 94 CA ALA B 414 6.868 -0.838 -0.758 1.00 27.70 ATOM 95 C ALA B 414 7.641 -0.008 0.260 1.00 31.18 ATOM 96 O ALA B 414 7.113 0.387 1.303 1.00 29.21 ATOM 97 CB ALA B 414 6.100 0.055 -1.728 1.00 40.53 ATOM 98 N ARG B 415 8.898 0.281 -0.073 1.00 44.25 ATOM 99 CA ARG B 415 9.848 0.913 0.827 1.00 27.43 ATOM 100 C ARG B 415 10.120 2.345 0.401 1.00 28.36 ATOM 101 O ARG B 415 10.117 2.670 -0.789 1.00 43.81 ATOM 102 CB ARG B 415 11.175 0.149 0.779 1.00 39.65 ATOM 103 CG ARG B 415 11.151 -1.273 1.266 1.00 44.98 ATOM 104 CD ARG B 415 11.264 -1.443 2.758 1.00 63.35 ATOM 105 NE ARG B 415 12.353 -2.360 3.089 1.00 66.69 ATOM 106 CZ ARG B 415 12.181 -3.634 3.430 1.00 73.96 ATOM 107 NH1 ARG B 415 10.966 -4.159 3.465 1.00 61.78 ATOM 108 NH2 ARG B 415 13.227 -4.395 3.718 1.00 83.62 ATOM 109 N PHE B 416 10.494 3.174 1.367 1.00 33.28 ATOM 110 CA PHE B 416 10.662 4.585 1.101 1.00 29.16 ATOM 111 C PHE B 416 11.744 5.142 2.003 1.00 44.18 ATOM 112 O PHE B 416 11.978 4.643 3.105 1.00 47.31 ATOM 113 CB PHE B 416 9.372 5.354 1.327 1.00 18.29 ATOM 114 CG PHE B 416 8.209 4.783 0.565 1.00 27.91 ATOM 115 CD1 PHE B 416 7.967 5.156 -0.735 1.00 33.25 ATOM 116 CD2 PHE B 416 7.422 3.806 1.137 1.00 27.36 ATOM 117 CE1 PHE B 416 6.900 4.619 -1.453 1.00 32.97 ATOM 118 CE2 PHE B 416 6.383 3.240 0.451 1.00 30.07 ATOM 119 CZ PHE B 416 6.095 3.676 -0.865 1.00 29.52 ATOM 120 N THR B 417 12.349 6.226 1.522 1.00 33.69 ATOM 121 CA THR B 417 13.386 6.923 2.248 1.00 29.49 ATOM 122 C THR B 417 12.828 7.678 3.448 1.00 39.37 ATOM 123 O THR B 417 13.534 7.846 4.455 1.00 26.60 ATOM 124 CB THR B 417 14.102 7.904 1.301 1.00 29.92 ATOM 125 OG1 THR B 417 15.027 7.181 0.451 1.00 35.73 ATOM 126 CG2 THR B 417 14.854 8.886 2.101 1.00 53.87 ATOM 127 N GLN B 418 11.612 8.238 3.340 1.00 22.00 ATOM 128 CA GLN B 418 11.067 9.015 4.446 1.00 30.90 ATOM 129 C GLN B 418 9.619 8.644 4.715 1.00 37.18 ATOM 130 O GLN B 418 8.923 8.061 3.872 1.00 38.48 ATOM 131 CB GLN B 418 11.166 10.551 4.219 1.00 30.97 ATOM 132 CG GLN B 418 12.577 11.067 3.951 1.00 28.33 ATOM 133 CD GLN B 418 12.676 12.582 3.720 1.00 41.93 ATOM 134 OE1 GLN B 418 13.807 13.118 3.463 1.00 57.88 ATOM 135 NE2 GLN B 418 11.591 13.272 3.834 1.00 36.34 ATOM 136 N SER B 419 9.187 9.004 5.927 1.00 22.08 ATOM 137 CA SER B 419 7.851 8.663 6.358 1.00 39.81 ATOM 138 C SER B 419 6.828 9.418 5.522 1.00 41.89 ATOM 139 O SER B 419 5.872 8.816 5.041 1.00 28.80 ATOM 140 CB SER B 419 7.684 8.970 7.848 1.00 55.48 ATOM 141 OG SER B 419 6.494 8.387 8.366 1.00 67.50 ATOM 142 N GLY B 420 7.071 10.710 5.259 1.00 31.84 ATOM 143 CA GLY B 420 6.111 11.500 4.500 1.00 32.56 ATOM 144 C GLY B 420 5.863 10.927 3.119 1.00 43.94 ATOM 145 O GLY B 420 4.706 10.761 2.710 1.00 42.48 ATOM 146 N THR B 421 6.929 10.480 2.448 1.00 32.94 ATOM 147 CA THR B 421 6.776 9.838 1.145 1.00 24.18 ATOM 148 C THR B 421 5.883 8.626 1.242 1.00 21.63 ATOM 149 O THR B 421 5.120 8.335 0.321 1.00 20.27 ATOM 150 CB THR B 421 8.136 9.372 0.600 1.00 25.29 ATOM 151 OG1 THR B 421 9.055 10.476 0.500 1.00 37.52 ATOM 152 CG2 THR B 421 7.984 8.636 -0.711 1.00 21.81 ATOM 153 N MET B 422 6.064 7.854 2.313 1.00 19.96 ATOM 154 CA MET B 422 5.274 6.658 2.530 1.00 41.68 ATOM 155 C MET B 422 3.814 7.023 2.768 1.00 40.63 ATOM 156 O MET B 422 2.927 6.392 2.209 1.00 27.58 ATOM 157 CB MET B 422 5.858 5.859 3.698 1.00 32.03 ATOM 158 CG MET B 422 5.141 4.542 3.956 1.00 35.60 ATOM 159 SD MET B 422 5.588 3.717 5.512 1.00 43.95 ATOM 160 CE MET B 422 4.832 4.803 6.723 1.00 28.82 ATOM 161 N LYS B 423 3.556 8.033 3.593 1.00 42.60 ATOM 162 CA LYS B 423 2.202 8.536 3.810 1.00 40.39 ATOM 163 C LYS B 423 1.542 9.004 2.501 1.00 29.73 ATOM 164 O LYS B 423 0.360 8.743 2.271 1.00 31.74 ATOM 165 CB LYS B 423 2.253 9.647 4.853 1.00 36.04 ATOM 166 CG LYS B 423 1.176 10.649 4.745 1.00 36.79 ATOM 167 CD LYS B 423 0.828 11.284 6.111 1.00 55.75 ATOM 168 CE LYS B 423 -0.410 12.160 5.986 1.00 51.14 ATOM 169 NZ LYS B 423 -1.330 11.508 4.971 1.00 54.61 ATOM 170 N MET B 424 2.281 9.713 1.637 1.00 30.45 ATOM 171 CA MET B 424 1.695 10.153 0.368 1.00 21.83 ATOM 172 C MET B 424 1.409 8.958 -0.535 1.00 34.78 ATOM 173 O MET B 424 0.334 8.883 -1.153 1.00 47.37 ATOM 174 CB MET B 424 2.588 11.183 -0.326 1.00 22.43 ATOM 175 CG MET B 424 2.140 11.516 -1.749 1.00 47.81 ATOM 176 SD MET B 424 0.576 12.457 -1.809 1.00 48.92 ATOM 177 CE MET B 424 1.061 14.005 -1.068 1.00 59.37 ATOM 178 N HIS B 425 2.301 7.962 -0.542 1.00 27.48 ATOM 179 CA HIS B 425 1.994 6.695 -1.217 1.00 25.75 ATOM 180 C HIS B 425 0.701 6.041 -0.693 1.00 29.98 ATOM 181 O HIS B 425 -0.118 5.555 -1.477 1.00 39.83 ATOM 182 CB HIS B 425 3.159 5.736 -1.039 1.00 19.79 ATOM 183 CG HIS B 425 2.788 4.294 -1.193 1.00 23.66 ATOM 184 ND1 HIS B 425 2.697 3.681 -2.419 1.00 36.86 ATOM 185 CD2 HIS B 425 2.485 3.347 -0.281 1.00 34.19 ATOM 186 CE1 HIS B 425 2.335 2.423 -2.259 1.00 39.36 ATOM 187 NE2 HIS B 425 2.207 2.194 -0.969 1.00 43.71 ATOM 188 N ILE B 426 0.525 5.970 0.630 1.00 20.63 ATOM 189 CA ILE B 426 -0.684 5.369 1.194 1.00 26.87 ATOM 190 C ILE B 426 -1.927 6.177 0.808 1.00 33.90 ATOM 191 O ILE B 426 -2.961 5.616 0.438 1.00 32.73 ATOM 192 CB ILE B 426 -0.529 5.216 2.716 1.00 26.50 ATOM 193 CG1 ILE B 426 0.431 4.053 3.004 1.00 31.67 ATOM 194 CG2 ILE B 426 -1.906 4.985 3.382 1.00 35.47 ATOM 195 CD1 ILE B 426 0.885 3.920 4.417 1.00 24.20 ATOM 196 N LEU B 427 -1.814 7.501 0.826 1.00 29.05 ATOM 197 CA LEU B 427 -2.912 8.375 0.457 1.00 39.67 ATOM 198 C LEU B 427 -3.360 8.123 -0.980 1.00 50.27 ATOM 199 O LEU B 427 -4.569 8.055 -1.263 1.00 51.41 ATOM 200 CB LEU B 427 -2.454 9.817 0.620 1.00 44.01 ATOM 201 CG LEU B 427 -2.961 10.702 1.729 1.00 60.18 ATOM 202 CD1 LEU B 427 -2.746 12.108 1.324 1.00 49.45 ATOM 203 CD2 LEU B 427 -4.398 10.459 1.938 1.00 54.80 ATOM 204 N GLN B 428 -2.403 7.981 -1.889 1.00 30.90 ATOM 205 CA GLN B 428 -2.706 7.868 -3.304 1.00 25.30 ATOM 206 C GLN B 428 -3.098 6.460 -3.702 1.00 27.11 ATOM 207 O GLN B 428 -3.784 6.286 -4.707 1.00 44.96 ATOM 208 CB GLN B 428 -1.472 8.264 -4.141 1.00 35.12 ATOM 209 CG GLN B 428 -1.036 9.693 -3.971 1.00 38.27 ATOM 210 CD GLN B 428 -2.146 10.651 -4.356 1.00 53.80 ATOM 211 OE1 GLN B 428 -2.408 11.631 -3.666 1.00 74.69 ATOM 212 NE2 GLN B 428 -2.829 10.342 -5.444 1.00 62.72 ATOM 213 N LYS B 429 -2.628 5.441 -2.976 1.00 31.74 ATOM 214 CA LYS B 429 -2.795 4.066 -3.437 1.00 29.61 ATOM 215 C LYS B 429 -3.776 3.228 -2.615 1.00 40.40 ATOM 216 O LYS B 429 -4.409 2.325 -3.164 1.00 35.41 ATOM 217 CB LYS B 429 -1.446 3.346 -3.453 1.00 39.44 ATOM 218 CG LYS B 429 -0.848 3.091 -4.837 1.00 54.56 ATOM 219 CD LYS B 429 -0.646 4.372 -5.621 1.00 52.04 ATOM 220 CE LYS B 429 0.024 4.121 -6.956 1.00 54.31 ATOM 221 NZ LYS B 429 -0.368 5.157 -7.930 1.00 47.39 ATOM 222 N HIS B 430 -3.847 3.427 -1.308 1.00 29.45 ATOM 223 CA HIS B 430 -4.622 2.544 -0.447 1.00 40.66 ATOM 224 C HIS B 430 -5.696 3.318 0.309 1.00 44.02 ATOM 225 O HIS B 430 -6.090 2.933 1.411 1.00 45.71 ATOM 226 CB HIS B 430 -3.709 1.799 0.523 1.00 31.70 ATOM 227 CG HIS B 430 -2.596 1.050 -0.144 1.00 49.66 ATOM 228 ND1 HIS B 430 -2.808 0.155 -1.169 1.00 54.39 ATOM 229 CD2 HIS B 430 -1.253 1.098 0.041 1.00 39.40 ATOM 230 CE1 HIS B 430 -1.646 -0.341 -1.563 1.00 53.62 ATOM 231 NE2 HIS B 430 -0.689 0.213 -0.844 1.00 40.24 ATOM 232 N THR B 431 -6.190 4.399 -0.284 1.00 45.47 ATOM 233 CA THR B 431 -7.087 5.305 0.418 1.00 46.19 ATOM 234 C THR B 431 -8.187 5.802 -0.507 1.00 49.30 ATOM 235 O THR B 431 -7.928 6.188 -1.647 1.00 52.27 ATOM 236 CB THR B 431 -6.323 6.496 0.988 1.00 44.42 ATOM 237 OG1 THR B 431 -5.188 6.020 1.719 1.00 44.31 ATOM 238 CG2 THR B 431 -7.244 7.315 1.919 1.00 34.17 ATOM 239 N GLU B 432 -9.415 5.802 -0.013 1.00 50.46 ATOM 240 CA GLU B 432 -10.510 6.350 -0.792 1.00 74.72 ATOM 241 C GLU B 432 -11.020 7.605 -0.105 1.00 67.50 ATOM 242 O GLU B 432 -10.661 7.890 1.040 1.00 78.96 ATOM 243 CB GLU B 432 -11.625 5.305 -1.042 1.00 78.73 ATOM 244 CG GLU B 432 -12.153 4.542 0.150 1.00 81.33 ATOM 245 CD GLU B 432 -13.249 3.543 -0.265 1.00 88.28 ATOM 246 OE1 GLU B 432 -14.323 3.502 0.382 1.00 83.35 ATOM 247 OE2 GLU B 432 -13.044 2.809 -1.263 1.00 85.87 ATOM 248 N ASN B 433 -11.798 8.377 -0.859 1.00 62.65 ATOM 249 CA ASN B 433 -12.307 9.677 -0.444 1.00 60.73 ATOM 250 C ASN B 433 -11.174 10.703 -0.435 1.00 58.67 ATOM 251 O ASN B 433 -11.203 11.636 0.370 1.00 55.39 ATOM 252 CB ASN B 433 -12.950 9.600 0.943 1.00 66.41 ATOM 253 CG ASN B 433 -14.255 8.846 0.940 1.00 74.78 ATOM 254 OD1 ASN B 433 -14.385 7.822 1.609 1.00 93.43 ATOM 255 ND2 ASN B 433 -15.208 9.319 0.172 1.00 49.27 ATOM 256 N VAL B 434 -10.163 10.546 -1.296 1.00 79.31 ATOM 257 CA VAL B 434 -9.027 11.466 -1.275 1.00 61.32 ATOM 258 C VAL B 434 -9.374 12.731 -2.031 1.00 54.40 ATOM 259 O VAL B 434 -9.715 12.689 -3.218 1.00 49.21 ATOM 260 CB VAL B 434 -7.768 10.847 -1.899 1.00 49.28 ATOM 261 CG1 VAL B 434 -6.550 11.657 -1.461 1.00 52.16 ATOM 262 CG2 VAL B 434 -7.623 9.384 -1.563 1.00 45.67 ATOM 263 ZN ZN B 503 1.524 0.508 -0.369 1.00 41.41 TER