HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEH TITLE Crystal struture of CTCF ZFs4-8-eCBS COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.33 ANGSTORMS DBREF 5YEH B 349 490 UNP P49711 CTCF_HUMAN 349 490 SEQRES 1 B 28 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 2 B 28 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 3 B 28 HIS SER ATOM 1 N GLY B 375 21.721 32.359 7.750 1.00 91.23 ATOM 2 CA GLY B 375 22.323 31.442 6.810 1.00 90.46 ATOM 3 C GLY B 375 23.360 30.513 7.397 1.00 86.06 ATOM 4 O GLY B 375 24.067 29.842 6.633 1.00 83.20 ATOM 5 N GLU B 376 23.470 30.461 8.720 1.00 82.73 ATOM 6 CA GLU B 376 24.405 29.583 9.401 1.00 74.31 ATOM 7 C GLU B 376 23.969 28.134 9.254 1.00 79.22 ATOM 8 O GLU B 376 22.798 27.799 9.468 1.00 88.07 ATOM 9 CB GLU B 376 24.498 29.956 10.881 1.00 63.83 ATOM 10 N ARG B 377 24.910 27.282 8.858 1.00 67.85 ATOM 11 CA ARG B 377 24.722 25.836 8.817 1.00 55.38 ATOM 12 C ARG B 377 25.837 25.228 9.660 1.00 53.40 ATOM 13 O ARG B 377 26.930 24.936 9.147 1.00 51.77 ATOM 14 CB ARG B 377 24.735 25.324 7.377 1.00 57.80 ATOM 15 CG ARG B 377 23.583 25.846 6.526 1.00 48.03 ATOM 16 CD ARG B 377 23.849 25.644 5.047 1.00 49.34 ATOM 17 NE ARG B 377 22.705 25.992 4.208 1.00 46.23 ATOM 18 CZ ARG B 377 21.762 25.129 3.828 1.00 60.26 ATOM 19 NH1 ARG B 377 21.821 23.863 4.219 1.00 55.68 ATOM 20 NH2 ARG B 377 20.751 25.527 3.055 1.00 52.30 ATOM 21 N PRO B 378 25.620 25.056 10.968 1.00 56.56 ATOM 22 CA PRO B 378 26.720 24.634 11.847 1.00 49.93 ATOM 23 C PRO B 378 27.125 23.183 11.671 1.00 56.75 ATOM 24 O PRO B 378 28.298 22.847 11.868 1.00 64.81 ATOM 25 CB PRO B 378 26.156 24.867 13.260 1.00 50.81 ATOM 26 CG PRO B 378 24.951 25.700 13.079 1.00 53.77 ATOM 27 CD PRO B 378 24.412 25.396 11.730 1.00 54.45 ATOM 28 N PHE B 379 26.192 22.304 11.344 1.00 55.20 ATOM 29 CA PHE B 379 26.416 20.869 11.421 1.00 54.62 ATOM 30 C PHE B 379 26.889 20.372 10.071 1.00 50.32 ATOM 31 O PHE B 379 26.116 20.334 9.112 1.00 60.80 ATOM 32 CB PHE B 379 25.141 20.188 11.901 1.00 48.42 ATOM 33 CG PHE B 379 24.649 20.772 13.178 1.00 52.33 ATOM 34 CD1 PHE B 379 25.197 20.363 14.385 1.00 50.65 ATOM 35 CD2 PHE B 379 23.715 21.793 13.178 1.00 57.29 ATOM 36 CE1 PHE B 379 24.788 20.930 15.584 1.00 55.11 ATOM 37 CE2 PHE B 379 23.293 22.362 14.372 1.00 56.18 ATOM 38 CZ PHE B 379 23.830 21.928 15.578 1.00 56.15 ATOM 39 N GLN B 380 28.154 19.987 10.006 1.00 41.70 ATOM 40 CA GLN B 380 28.775 19.638 8.744 1.00 55.66 ATOM 41 C GLN B 380 28.705 18.137 8.530 1.00 47.21 ATOM 42 O GLN B 380 29.062 17.358 9.418 1.00 49.14 ATOM 43 CB GLN B 380 30.235 20.110 8.704 1.00 37.70 ATOM 44 N CYS B 381 28.280 17.742 7.332 1.00 38.36 ATOM 45 CA CYS B 381 28.316 16.338 6.971 1.00 39.57 ATOM 46 C CYS B 381 29.773 15.914 6.843 1.00 37.51 ATOM 47 O CYS B 381 30.577 16.618 6.230 1.00 48.10 ATOM 48 CB CYS B 381 27.569 16.102 5.658 1.00 34.63 ATOM 49 SG CYS B 381 27.614 14.383 5.095 1.00 35.26 ATOM 50 N SER B 382 30.118 14.759 7.402 1.00 42.86 ATOM 51 CA SER B 382 31.495 14.285 7.357 1.00 59.01 ATOM 52 C SER B 382 31.807 13.501 6.093 1.00 49.06 ATOM 53 O SER B 382 32.877 12.895 5.999 1.00 55.12 ATOM 54 CB SER B 382 31.795 13.425 8.585 1.00 60.49 ATOM 55 OG SER B 382 31.110 12.189 8.504 1.00 68.67 ATOM 56 N LEU B 383 30.922 13.538 5.103 1.00 39.73 ATOM 57 CA LEU B 383 31.074 12.685 3.933 1.00 36.58 ATOM 58 C LEU B 383 31.020 13.554 2.690 1.00 39.74 ATOM 59 O LEU B 383 31.504 13.155 1.628 1.00 35.68 ATOM 60 CB LEU B 383 29.973 11.644 3.881 1.00 36.75 ATOM 61 CG LEU B 383 29.986 10.412 4.795 1.00 38.55 ATOM 62 CD1 LEU B 383 28.837 9.492 4.352 1.00 30.52 ATOM 63 CD2 LEU B 383 31.344 9.678 4.851 1.00 29.98 ATOM 64 N CYS B 384 30.389 14.724 2.802 1.00 35.53 ATOM 65 CA CYS B 384 30.289 15.629 1.674 1.00 34.80 ATOM 66 C CYS B 384 30.307 17.060 2.189 1.00 41.76 ATOM 67 O CYS B 384 30.438 17.313 3.389 1.00 59.26 ATOM 68 CB CYS B 384 29.050 15.322 0.825 1.00 36.90 ATOM 69 SG CYS B 384 27.422 15.966 1.384 1.00 40.90 ATOM 70 N SER B 385 30.216 18.002 1.261 1.00 39.05 ATOM 71 CA SER B 385 30.282 19.410 1.641 1.00 58.12 ATOM 72 C SER B 385 28.926 19.996 2.008 1.00 46.55 ATOM 73 O SER B 385 28.737 21.212 1.933 1.00 51.25 ATOM 74 CB SER B 385 30.936 20.225 0.518 1.00 63.82 ATOM 75 OG SER B 385 32.311 19.888 0.408 1.00 68.49 ATOM 76 N TYR B 386 27.984 19.150 2.415 1.00 55.65 ATOM 77 CA TYR B 386 26.704 19.601 2.936 1.00 36.81 ATOM 78 C TYR B 386 26.831 19.936 4.411 1.00 46.60 ATOM 79 O TYR B 386 27.565 19.279 5.156 1.00 68.31 ATOM 80 CB TYR B 386 25.632 18.534 2.736 1.00 34.61 ATOM 81 CG TYR B 386 24.313 18.823 3.417 1.00 31.82 ATOM 82 CD1 TYR B 386 23.430 19.746 2.902 1.00 34.59 ATOM 83 CD2 TYR B 386 23.939 18.140 4.550 1.00 35.36 ATOM 84 CE1 TYR B 386 22.221 20.006 3.521 1.00 50.21 ATOM 85 CE2 TYR B 386 22.704 18.404 5.188 1.00 37.31 ATOM 86 CZ TYR B 386 21.861 19.332 4.660 1.00 48.20 ATOM 87 OH TYR B 386 20.633 19.607 5.249 1.00 45.27 ATOM 88 N ALA B 387 26.064 20.932 4.831 1.00 44.74 ATOM 89 CA ALA B 387 26.018 21.353 6.219 1.00 42.17 ATOM 90 C ALA B 387 24.618 21.859 6.486 1.00 49.48 ATOM 91 O ALA B 387 24.044 22.577 5.673 1.00 45.68 ATOM 92 CB ALA B 387 27.042 22.447 6.556 1.00 39.98 ATOM 93 N SER B 388 24.061 21.466 7.619 1.00 48.31 ATOM 94 CA SER B 388 22.677 21.769 7.911 1.00 43.98 ATOM 95 C SER B 388 22.613 22.810 9.018 1.00 54.42 ATOM 96 O SER B 388 23.580 23.016 9.758 1.00 53.24 ATOM 97 CB SER B 388 21.925 20.494 8.312 1.00 44.45 ATOM 98 OG SER B 388 20.774 20.805 9.044 1.00 59.24 ATOM 99 N ARG B 389 21.455 23.464 9.127 1.00 49.62 ATOM 100 CA ARG B 389 21.278 24.449 10.181 1.00 56.65 ATOM 101 C ARG B 389 20.873 23.819 11.505 1.00 61.05 ATOM 102 O ARG B 389 20.874 24.511 12.526 1.00 75.28 ATOM 103 CB ARG B 389 20.247 25.509 9.761 1.00 61.04 ATOM 104 CG ARG B 389 18.779 25.081 9.766 1.00 63.68 ATOM 105 CD ARG B 389 17.940 26.072 10.592 1.00 75.98 ATOM 106 NE ARG B 389 16.486 25.964 10.418 1.00 80.55 ATOM 107 CZ ARG B 389 15.733 25.033 10.999 1.00 79.55 ATOM 108 NH1 ARG B 389 14.422 25.003 10.821 1.00 66.01 ATOM 109 NH2 ARG B 389 16.305 24.094 11.728 1.00 91.78 ATOM 110 N ASP B 390 20.536 22.533 11.518 1.00 49.83 ATOM 111 CA ASP B 390 20.202 21.837 12.752 1.00 57.18 ATOM 112 C ASP B 390 20.661 20.389 12.642 1.00 61.63 ATOM 113 O ASP B 390 21.073 19.936 11.574 1.00 61.11 ATOM 114 CB ASP B 390 18.704 21.984 13.040 1.00 60.25 ATOM 115 CG ASP B 390 17.832 21.361 11.963 1.00 74.19 ATOM 116 OD1 ASP B 390 18.103 20.234 11.514 1.00 75.08 ATOM 117 OD2 ASP B 390 16.893 22.037 11.508 1.00 88.95 ATOM 118 N THR B 391 20.587 19.655 13.762 1.00 61.74 ATOM 119 CA THR B 391 21.142 18.299 13.782 1.00 54.80 ATOM 120 C THR B 391 20.260 17.313 13.026 1.00 51.99 ATOM 121 O THR B 391 20.776 16.436 12.317 1.00 64.52 ATOM 122 CB THR B 391 21.340 17.804 15.218 1.00 51.10 ATOM 123 OG1 THR B 391 20.127 17.991 15.951 1.00 78.70 ATOM 124 CG2 THR B 391 22.459 18.537 15.913 1.00 52.36 ATOM 125 N TYR B 392 18.930 17.455 13.136 1.00 43.68 ATOM 126 CA TYR B 392 18.037 16.462 12.539 1.00 33.38 ATOM 127 C TYR B 392 18.215 16.383 11.035 1.00 39.26 ATOM 128 O TYR B 392 18.327 15.291 10.473 1.00 42.24 ATOM 129 CB TYR B 392 16.587 16.754 12.857 1.00 50.48 ATOM 130 CG TYR B 392 15.671 15.820 12.095 1.00 45.90 ATOM 131 CD1 TYR B 392 15.427 14.537 12.568 1.00 44.84 ATOM 132 CD2 TYR B 392 15.037 16.227 10.929 1.00 36.77 ATOM 133 CE1 TYR B 392 14.599 13.685 11.895 1.00 52.85 ATOM 134 CE2 TYR B 392 14.194 15.382 10.249 1.00 37.78 ATOM 135 CZ TYR B 392 13.982 14.112 10.741 1.00 50.49 ATOM 136 OH TYR B 392 13.156 13.248 10.089 1.00 63.66 ATOM 137 N LYS B 393 18.257 17.529 10.362 1.00 44.34 ATOM 138 CA LYS B 393 18.420 17.494 8.917 1.00 46.09 ATOM 139 C LYS B 393 19.765 16.914 8.498 1.00 49.35 ATOM 140 O LYS B 393 19.857 16.343 7.408 1.00 55.40 ATOM 141 CB LYS B 393 18.243 18.898 8.344 1.00 48.02 ATOM 142 CG LYS B 393 16.817 19.386 8.410 1.00 43.41 ATOM 143 CD LYS B 393 16.599 20.587 7.507 1.00 52.78 ATOM 144 CE LYS B 393 16.459 21.858 8.330 1.00 51.75 ATOM 145 NZ LYS B 393 15.206 21.822 9.124 1.00 63.40 ATOM 146 N LEU B 394 20.791 16.989 9.355 1.00 30.59 ATOM 147 CA LEU B 394 22.056 16.344 9.023 1.00 35.12 ATOM 148 C LEU B 394 21.913 14.831 9.130 1.00 35.90 ATOM 149 O LEU B 394 22.260 14.081 8.201 1.00 32.82 ATOM 150 CB LEU B 394 23.173 16.829 9.962 1.00 35.76 ATOM 151 CG LEU B 394 24.559 16.241 9.664 1.00 44.57 ATOM 152 CD1 LEU B 394 25.093 16.770 8.315 1.00 41.37 ATOM 153 CD2 LEU B 394 25.562 16.414 10.781 1.00 33.16 ATOM 154 N LYS B 395 21.359 14.366 10.249 1.00 32.83 ATOM 155 CA LYS B 395 21.114 12.933 10.391 1.00 43.47 ATOM 156 C LYS B 395 20.260 12.402 9.241 1.00 36.37 ATOM 157 O LYS B 395 20.498 11.303 8.728 1.00 39.84 ATOM 158 CB LYS B 395 20.456 12.627 11.728 1.00 26.34 ATOM 159 CG LYS B 395 20.311 11.147 12.001 1.00 35.06 ATOM 160 CD LYS B 395 19.741 10.921 13.392 1.00 40.82 ATOM 161 CE LYS B 395 19.307 9.505 13.569 1.00 45.69 ATOM 162 NZ LYS B 395 18.185 9.409 14.523 1.00 52.89 ATOM 163 N ARG B 396 19.242 13.155 8.837 1.00 32.48 ATOM 164 CA ARG B 396 18.412 12.668 7.743 1.00 36.85 ATOM 165 C ARG B 396 19.156 12.767 6.427 1.00 22.03 ATOM 166 O ARG B 396 19.008 11.901 5.571 1.00 26.57 ATOM 167 CB ARG B 396 17.060 13.403 7.713 1.00 27.21 ATOM 168 CG ARG B 396 16.131 13.035 6.531 1.00 33.10 ATOM 169 CD ARG B 396 14.830 13.920 6.542 1.00 33.62 ATOM 170 NE ARG B 396 15.190 15.294 6.212 1.00 23.72 ATOM 171 CZ ARG B 396 14.370 16.331 6.269 1.00 31.75 ATOM 172 NH1 ARG B 396 13.089 16.180 6.640 1.00 38.38 ATOM 173 NH2 ARG B 396 14.822 17.519 5.912 1.00 28.82 ATOM 174 N HIS B 397 20.052 13.739 6.288 1.00 40.17 ATOM 175 CA HIS B 397 20.827 13.805 5.050 1.00 32.86 ATOM 176 C HIS B 397 21.764 12.605 4.879 1.00 35.31 ATOM 177 O HIS B 397 21.901 12.103 3.760 1.00 38.25 ATOM 178 CB HIS B 397 21.638 15.091 5.002 1.00 40.87 ATOM 179 CG HIS B 397 22.768 15.036 4.030 1.00 32.60 ATOM 180 ND1 HIS B 397 22.618 15.341 2.695 1.00 40.95 ATOM 181 CD2 HIS B 397 24.054 14.651 4.188 1.00 31.78 ATOM 182 CE1 HIS B 397 23.769 15.164 2.074 1.00 37.24 ATOM 183 NE2 HIS B 397 24.655 14.742 2.955 1.00 43.83 ATOM 184 N MET B 398 22.279 12.031 5.979 1.00 31.06 ATOM 185 CA MET B 398 23.210 10.888 5.857 1.00 30.45 ATOM 186 C MET B 398 22.585 9.673 5.174 1.00 48.22 ATOM 187 O MET B 398 23.293 8.904 4.484 1.00 40.64 ATOM 188 CB MET B 398 23.676 10.432 7.229 1.00 29.70 ATOM 189 CG MET B 398 24.317 11.522 8.049 1.00 44.50 ATOM 190 SD MET B 398 25.577 12.334 7.084 1.00 50.17 ATOM 191 CE MET B 398 26.916 11.157 7.258 1.00 50.86 ATOM 192 N ARG B 399 21.255 9.536 5.294 1.00 22.00 ATOM 193 CA ARG B 399 20.522 8.432 4.685 1.00 21.76 ATOM 194 C ARG B 399 20.750 8.397 3.177 1.00 28.56 ATOM 195 O ARG B 399 20.764 7.324 2.561 1.00 24.53 ATOM 196 CB ARG B 399 19.022 8.637 4.967 1.00 32.72 ATOM 197 CG ARG B 399 18.187 7.431 5.318 1.00 45.39 ATOM 198 CD ARG B 399 16.704 7.819 5.683 1.00 40.42 ATOM 199 NE ARG B 399 16.586 8.551 6.957 1.00 32.97 ATOM 200 CZ ARG B 399 15.472 9.107 7.437 1.00 35.68 ATOM 201 NH1 ARG B 399 14.322 9.037 6.767 1.00 40.07 ATOM 202 NH2 ARG B 399 15.504 9.739 8.602 1.00 56.83 ATOM 203 N THR B 400 20.943 9.568 2.582 1.00 22.01 ATOM 204 CA THR B 400 21.214 9.667 1.159 1.00 31.91 ATOM 205 C THR B 400 22.536 8.993 0.819 1.00 47.20 ATOM 206 O THR B 400 22.641 8.324 -0.209 1.00 38.31 ATOM 207 CB THR B 400 21.168 11.140 0.750 1.00 25.66 ATOM 208 OG1 THR B 400 19.819 11.609 0.851 1.00 61.67 ATOM 209 CG2 THR B 400 21.590 11.325 -0.679 1.00 61.54 ATOM 210 N HIS B 401 23.532 9.107 1.704 1.00 36.33 ATOM 211 CA HIS B 401 24.806 8.434 1.448 1.00 43.42 ATOM 212 C HIS B 401 24.656 6.934 1.605 1.00 31.02 ATOM 213 O HIS B 401 25.112 6.170 0.748 1.00 38.39 ATOM 214 CB HIS B 401 25.870 8.968 2.392 1.00 29.19 ATOM 215 CG HIS B 401 26.295 10.351 2.057 1.00 32.77 ATOM 216 ND1 HIS B 401 26.911 10.657 0.869 1.00 29.29 ATOM 217 CD2 HIS B 401 26.206 11.507 2.753 1.00 37.33 ATOM 218 CE1 HIS B 401 27.184 11.950 0.843 1.00 39.80 ATOM 219 NE2 HIS B 401 26.771 12.487 1.976 1.00 46.47 ATOM 220 N SER B 402 24.000 6.494 2.690 1.00 20.09 ATOM 221 CA SER B 402 23.868 5.051 2.907 1.00 21.40 ATOM 222 C SER B 402 22.837 4.378 2.003 1.00 35.24 ATOM 223 O SER B 402 22.954 3.183 1.735 1.00 35.55 ATOM 224 CB SER B 402 23.493 4.756 4.361 1.00 35.07 ATOM 225 OG SER B 402 22.637 5.741 4.897 1.00 58.89 ATOM 226 ZN ZN B 502 26.751 14.414 2.942 1.00 43.50 TER