HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEL TITLE Crystal structure of CTCF ZFs6-11-gb7CSE COMPND MOL_ID: 2; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 FRAGMENT: UNP residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.96 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 116 DBREF 5YEL A 405 580 UNP P49711 CTCF_HUMAN 405 580 SEQRES 1 A 30 ASN GLU LYS ARG PHE LYS CYS ASP GLN CYS ASP TYR ALA SEQRES 2 A 30 SER ARG GLN GLU ARG HIS MET ILE MET HIS LYS ARG THR SEQRES 3 A 30 HIS THR GLY GLU ATOM 1 N ASN A 491 344.043 39.522 146.804 1.00103.91 ATOM 2 CA ASN A 491 345.450 39.196 146.984 1.00 96.96 ATOM 3 C ASN A 491 346.337 40.123 146.148 1.00 93.97 ATOM 4 O ASN A 491 346.043 41.308 146.162 1.00 92.82 ATOM 5 CB ASN A 491 345.661 37.716 146.742 1.00 97.51 ATOM 6 N GLU A 492 347.348 39.695 145.379 1.00 53.49 ATOM 7 CA GLU A 492 348.027 38.404 145.323 1.00 49.22 ATOM 8 C GLU A 492 349.377 38.698 144.731 1.00 76.09 ATOM 9 O GLU A 492 349.606 39.790 144.255 1.00 89.67 ATOM 10 CB GLU A 492 347.295 37.434 144.425 1.00 43.90 ATOM 11 N LYS A 493 350.277 37.733 144.749 1.00 81.66 ATOM 12 CA LYS A 493 351.578 37.942 144.151 1.00 87.11 ATOM 13 C LYS A 493 351.478 37.690 142.662 1.00 66.25 ATOM 14 O LYS A 493 351.892 36.656 142.168 1.00 65.72 ATOM 15 CB LYS A 493 352.593 36.992 144.766 1.00102.57 ATOM 16 N ARG A 494 350.918 38.668 141.963 1.00 88.76 ATOM 17 CA ARG A 494 350.533 38.553 140.564 1.00 67.99 ATOM 18 C ARG A 494 351.641 38.314 139.573 1.00 59.21 ATOM 19 O ARG A 494 351.437 37.594 138.614 1.00 71.89 ATOM 20 CB ARG A 494 349.775 39.796 140.113 1.00 78.56 ATOM 21 CG ARG A 494 348.636 40.209 141.015 1.00 87.49 ATOM 22 CD ARG A 494 348.389 41.690 140.886 1.00 76.91 ATOM 23 NE ARG A 494 346.984 42.012 141.029 1.00 75.00 ATOM 24 CZ ARG A 494 346.504 43.247 140.983 1.00 89.34 ATOM 25 NH1 ARG A 494 347.328 44.266 140.806 1.00 92.05 ATOM 26 NH2 ARG A 494 345.205 43.464 141.112 1.00 97.96 ATOM 27 N PHE A 495 352.785 38.963 139.744 1.00 69.44 ATOM 28 CA PHE A 495 353.847 38.810 138.761 1.00 70.38 ATOM 29 C PHE A 495 355.010 37.976 139.249 1.00 74.62 ATOM 30 O PHE A 495 355.796 38.420 140.064 1.00 88.25 ATOM 31 CB PHE A 495 354.381 40.172 138.353 1.00 59.50 ATOM 32 CG PHE A 495 353.316 41.158 138.003 1.00 69.97 ATOM 33 CD1 PHE A 495 352.475 41.648 138.966 1.00 76.56 ATOM 34 CD2 PHE A 495 353.171 41.603 136.714 1.00 60.88 ATOM 35 CE1 PHE A 495 351.498 42.564 138.650 1.00 58.21 ATOM 36 CE2 PHE A 495 352.198 42.517 136.388 1.00 49.30 ATOM 37 CZ PHE A 495 351.362 43.000 137.359 1.00 48.32 ATOM 38 N LYS A 496 355.145 36.782 138.700 1.00 70.28 ATOM 39 CA LYS A 496 356.292 35.945 138.980 1.00 82.70 ATOM 40 C LYS A 496 357.445 36.391 138.108 1.00 84.42 ATOM 41 O LYS A 496 357.234 37.036 137.094 1.00 74.37 ATOM 42 CB LYS A 496 355.956 34.480 138.739 1.00 78.73 ATOM 43 N CYS A 497 358.663 36.058 138.506 1.00 92.84 ATOM 44 CA CYS A 497 359.845 36.459 137.755 1.00 89.09 ATOM 45 C CYS A 497 360.566 35.221 137.242 1.00 92.67 ATOM 46 O CYS A 497 360.772 34.278 137.987 1.00 90.13 ATOM 47 CB CYS A 497 360.748 37.320 138.636 1.00 81.47 ATOM 48 SG CYS A 497 362.513 36.964 138.577 1.00 85.49 ATOM 49 N ASP A 498 360.912 35.202 135.961 1.00 96.70 ATOM 50 CA ASP A 498 361.487 34.000 135.378 1.00 97.61 ATOM 51 C ASP A 498 362.836 33.569 135.942 1.00 98.21 ATOM 52 O ASP A 498 363.033 32.402 136.261 1.00101.42 ATOM 53 CB ASP A 498 361.639 34.203 133.878 1.00 92.33 ATOM 54 CG ASP A 498 362.267 35.527 133.541 1.00 98.29 ATOM 55 OD1 ASP A 498 362.339 36.386 134.435 1.00110.41 ATOM 56 OD2 ASP A 498 362.695 35.715 132.388 1.00 91.55 ATOM 57 N GLN A 499 363.760 34.509 136.074 1.00 99.81 ATOM 58 CA GLN A 499 365.112 34.195 136.539 1.00 99.68 ATOM 59 C GLN A 499 365.252 33.747 137.995 1.00 92.71 ATOM 60 O GLN A 499 366.038 32.869 138.308 1.00 87.84 ATOM 61 CB GLN A 499 366.070 35.331 136.207 1.00 96.87 ATOM 62 CG GLN A 499 366.054 35.698 134.735 1.00 97.65 ATOM 63 CD GLN A 499 367.391 36.200 134.248 1.00 97.87 ATOM 64 OE1 GLN A 499 368.430 35.899 134.831 1.00107.45 ATOM 65 NE2 GLN A 499 367.375 36.972 133.173 1.00 86.20 ATOM 66 N CYS A 500 364.491 34.378 138.876 1.00 82.12 ATOM 67 CA CYS A 500 364.573 34.155 140.311 1.00 73.21 ATOM 68 C CYS A 500 363.153 34.008 140.812 1.00 76.36 ATOM 69 O CYS A 500 362.223 34.288 140.084 1.00 88.76 ATOM 70 CB CYS A 500 365.323 35.297 141.004 1.00 65.02 ATOM 71 SG CYS A 500 364.343 36.683 141.581 1.00 46.34 ATOM 72 N ASP A 501 362.968 33.531 142.028 1.00 75.79 ATOM 73 CA ASP A 501 361.633 33.186 142.492 1.00 75.78 ATOM 74 C ASP A 501 360.910 34.302 143.250 1.00 70.92 ATOM 75 O ASP A 501 359.972 34.050 143.989 1.00 65.33 ATOM 76 CB ASP A 501 361.660 31.907 143.306 1.00 80.54 ATOM 77 CG ASP A 501 362.074 32.141 144.710 1.00 96.47 ATOM 78 OD1 ASP A 501 363.157 32.718 144.903 1.00107.04 ATOM 79 OD2 ASP A 501 361.319 31.759 145.619 1.00103.80 ATOM 80 N TYR A 502 361.394 35.524 143.099 1.00 54.89 ATOM 81 CA TYR A 502 360.760 36.701 143.672 1.00 51.44 ATOM 82 C TYR A 502 359.390 36.937 143.062 1.00 76.91 ATOM 83 O TYR A 502 359.193 36.643 141.900 1.00 94.00 ATOM 84 CB TYR A 502 361.647 37.903 143.389 1.00 52.21 ATOM 85 CG TYR A 502 361.060 39.234 143.756 1.00 48.48 ATOM 86 CD1 TYR A 502 361.004 40.254 142.836 1.00 47.31 ATOM 87 CD2 TYR A 502 360.591 39.479 145.026 1.00 41.24 ATOM 88 CE1 TYR A 502 360.473 41.474 143.161 1.00 42.97 ATOM 89 CE2 TYR A 502 360.062 40.697 145.360 1.00 39.99 ATOM 90 CZ TYR A 502 360.012 41.687 144.421 1.00 49.90 ATOM 91 OH TYR A 502 359.491 42.906 144.741 1.00 60.21 ATOM 92 N ALA A 503 358.433 37.438 143.842 1.00 82.73 ATOM 93 CA ALA A 503 357.110 37.782 143.312 1.00 75.49 ATOM 94 C ALA A 503 356.600 39.125 143.805 1.00 67.27 ATOM 95 O ALA A 503 356.791 39.460 144.958 1.00 74.81 ATOM 96 CB ALA A 503 356.112 36.703 143.661 1.00 76.94 ATOM 97 N SER A 504 355.919 39.876 142.946 1.00 68.39 ATOM 98 CA SER A 504 355.396 41.186 143.325 1.00 61.23 ATOM 99 C SER A 504 353.920 41.403 143.017 1.00 61.65 ATOM 100 O SER A 504 353.437 40.999 141.981 1.00 55.11 ATOM 101 CB SER A 504 356.217 42.288 142.671 1.00 65.59 ATOM 102 OG SER A 504 355.688 42.674 141.420 1.00 70.80 ATOM 103 N ARG A 505 353.213 42.058 143.922 1.00 59.66 ATOM 104 CA ARG A 505 351.847 42.473 143.669 1.00 59.73 ATOM 105 C ARG A 505 351.774 43.499 142.550 1.00 71.30 ATOM 106 O ARG A 505 350.826 43.518 141.793 1.00 72.17 ATOM 107 CB ARG A 505 351.183 43.010 144.933 1.00 53.16 ATOM 108 N GLN A 506 352.754 44.387 142.479 1.00 67.30 ATOM 109 CA GLN A 506 352.746 45.452 141.486 1.00 59.01 ATOM 110 C GLN A 506 353.849 45.284 140.469 1.00 68.88 ATOM 111 O GLN A 506 354.931 44.827 140.789 1.00 88.23 ATOM 112 CB GLN A 506 352.872 46.815 142.146 1.00 53.02 ATOM 113 CG GLN A 506 352.072 46.962 143.422 1.00 51.47 ATOM 114 CD GLN A 506 351.902 48.404 143.816 1.00 67.32 ATOM 115 OE1 GLN A 506 352.344 49.296 143.111 1.00 67.22 ATOM 116 NE2 GLN A 506 351.260 48.638 144.943 1.00 83.45 ATOM 117 N GLU A 507 353.556 45.619 139.225 1.00 62.60 ATOM 118 CA GLU A 507 354.525 45.465 138.163 1.00 63.49 ATOM 119 C GLU A 507 355.759 46.332 138.346 1.00 86.26 ATOM 120 O GLU A 507 356.876 45.876 138.127 1.00 83.21 ATOM 121 CB GLU A 507 353.877 45.790 136.826 1.00 70.39 ATOM 122 CG GLU A 507 353.972 44.678 135.804 1.00 81.72 ATOM 123 CD GLU A 507 353.669 45.154 134.405 1.00 91.98 ATOM 124 OE1 GLU A 507 354.514 44.944 133.518 1.00 95.89 ATOM 125 OE2 GLU A 507 352.593 45.740 134.195 1.00 84.63 ATOM 126 N ARG A 508 355.579 47.581 138.752 1.00 79.86 ATOM 127 CA ARG A 508 356.719 48.475 138.758 1.00 54.94 ATOM 128 C ARG A 508 357.798 47.800 139.552 1.00 65.37 ATOM 129 O ARG A 508 358.953 47.798 139.172 1.00 60.89 ATOM 130 CB ARG A 508 356.355 49.792 139.438 1.00 51.36 ATOM 131 CG ARG A 508 355.796 49.650 140.846 1.00 41.99 ATOM 132 CD ARG A 508 355.791 50.981 141.579 1.00 41.78 ATOM 133 NE ARG A 508 354.886 51.002 142.722 1.00 41.32 ATOM 134 CZ ARG A 508 354.770 52.023 143.560 1.00 45.11 ATOM 135 NH1 ARG A 508 355.512 53.105 143.382 1.00 54.31 ATOM 136 NH2 ARG A 508 353.921 51.962 144.577 1.00 43.41 ATOM 137 N HIS A 509 357.397 47.189 140.650 1.00 72.63 ATOM 138 CA HIS A 509 358.319 46.476 141.498 1.00 66.49 ATOM 139 C HIS A 509 358.913 45.338 140.717 1.00 72.06 ATOM 140 O HIS A 509 360.081 45.028 140.861 1.00 82.98 ATOM 141 CB HIS A 509 357.612 45.941 142.732 1.00 65.07 ATOM 142 CG HIS A 509 357.052 47.005 143.619 1.00 60.08 ATOM 143 ND1 HIS A 509 357.615 48.254 143.728 1.00 56.65 ATOM 144 CD2 HIS A 509 355.978 47.005 144.438 1.00 50.17 ATOM 145 CE1 HIS A 509 356.912 48.978 144.575 1.00 63.48 ATOM 146 NE2 HIS A 509 355.912 48.244 145.019 1.00 54.84 ATOM 147 N MET A 510 358.101 44.686 139.902 1.00 67.69 ATOM 148 CA MET A 510 358.602 43.563 139.136 1.00 68.86 ATOM 149 C MET A 510 359.674 44.002 138.172 1.00 69.71 ATOM 150 O MET A 510 360.665 43.317 137.988 1.00 82.73 ATOM 151 CB MET A 510 357.488 42.866 138.386 1.00 71.77 ATOM 152 CG MET A 510 357.897 41.509 137.855 1.00 70.18 ATOM 153 SD MET A 510 358.785 40.543 139.075 1.00 71.97 ATOM 154 CE MET A 510 360.439 40.658 138.426 1.00 83.77 ATOM 155 N ILE A 511 359.476 45.148 137.545 1.00 70.05 ATOM 156 CA ILE A 511 360.476 45.644 136.625 1.00 73.17 ATOM 157 C ILE A 511 361.794 45.947 137.316 1.00 77.80 ATOM 158 O ILE A 511 362.849 45.611 136.791 1.00 83.24 ATOM 159 CB ILE A 511 360.002 46.907 135.912 1.00 77.52 ATOM 160 CG1 ILE A 511 358.729 46.612 135.137 1.00 67.30 ATOM 161 CG2 ILE A 511 361.077 47.412 134.974 1.00 84.93 ATOM 162 CD1 ILE A 511 357.514 47.282 135.716 1.00 61.18 ATOM 163 N MET A 512 361.746 46.569 138.491 1.00 71.70 ATOM 164 CA MET A 512 362.986 46.893 139.170 1.00 59.25 ATOM 165 C MET A 512 363.727 45.632 139.517 1.00 54.87 ATOM 166 O MET A 512 364.916 45.538 139.302 1.00 64.63 ATOM 167 CB MET A 512 362.769 47.686 140.448 1.00 53.63 ATOM 168 CG MET A 512 361.459 48.420 140.576 1.00 54.66 ATOM 169 SD MET A 512 361.232 48.957 142.278 1.00 51.89 ATOM 170 CE MET A 512 361.895 47.564 143.162 1.00 63.48 ATOM 171 N HIS A 513 363.017 44.632 140.003 1.00 50.15 ATOM 172 CA HIS A 513 363.676 43.433 140.460 1.00 54.94 ATOM 173 C HIS A 513 364.399 42.869 139.282 1.00 78.41 ATOM 174 O HIS A 513 365.491 42.349 139.403 1.00 86.42 ATOM 175 CB HIS A 513 362.691 42.410 140.967 1.00 62.30 ATOM 176 CG HIS A 513 363.314 41.088 141.273 1.00 79.76 ATOM 177 ND1 HIS A 513 363.796 40.770 142.518 1.00 74.48 ATOM 178 CD2 HIS A 513 363.543 40.004 140.494 1.00 82.02 ATOM 179 CE1 HIS A 513 364.288 39.546 142.499 1.00 80.07 ATOM 180 NE2 HIS A 513 364.137 39.054 141.285 1.00 78.21 ATOM 181 N LYS A 514 363.795 43.003 138.117 1.00 89.28 ATOM 182 CA LYS A 514 364.322 42.375 136.925 1.00101.24 ATOM 183 C LYS A 514 365.722 42.895 136.752 1.00 92.82 ATOM 184 O LYS A 514 366.626 42.167 136.370 1.00 80.98 ATOM 185 CB LYS A 514 363.490 42.781 135.712 1.00106.11 ATOM 186 CG LYS A 514 362.631 41.671 135.136 1.00112.85 ATOM 187 CD LYS A 514 361.559 42.237 134.222 1.00114.71 ATOM 188 CE LYS A 514 360.269 41.439 134.319 1.00113.09 ATOM 189 NZ LYS A 514 359.074 42.268 134.002 1.00117.85 ATOM 190 N ARG A 515 365.902 44.162 137.072 1.00 84.78 ATOM 191 CA ARG A 515 367.158 44.836 136.822 1.00 78.22 ATOM 192 C ARG A 515 368.296 44.165 137.559 1.00 76.51 ATOM 193 O ARG A 515 369.416 44.161 137.073 1.00 75.23 ATOM 194 CB ARG A 515 367.053 46.323 137.143 1.00 70.32 ATOM 195 CG ARG A 515 365.806 46.954 136.546 1.00 61.95 ATOM 196 CD ARG A 515 366.025 48.385 136.104 1.00 51.24 ATOM 197 NE ARG A 515 365.041 49.271 136.709 1.00 60.29 ATOM 198 CZ ARG A 515 364.182 50.012 136.027 1.00 80.36 ATOM 199 NH1 ARG A 515 364.185 49.980 134.707 1.00 88.63 ATOM 200 NH2 ARG A 515 363.321 50.788 136.664 1.00 79.66 ATOM 201 N THR A 516 368.025 43.612 138.731 1.00 88.37 ATOM 202 CA THR A 516 369.076 42.913 139.443 1.00 92.65 ATOM 203 C THR A 516 369.584 41.731 138.629 1.00 97.44 ATOM 204 O THR A 516 370.786 41.513 138.558 1.00 97.66 ATOM 205 CB THR A 516 368.613 42.403 140.815 1.00 85.06 ATOM 206 OG1 THR A 516 369.741 41.898 141.531 1.00 95.19 ATOM 207 CG2 THR A 516 367.631 41.286 140.664 1.00 79.97 ATOM 208 N HIS A 517 368.680 40.952 138.037 1.00 92.46 ATOM 209 CA HIS A 517 369.075 39.826 137.183 1.00 93.56 ATOM 210 C HIS A 517 369.731 40.211 135.876 1.00 90.40 ATOM 211 O HIS A 517 370.767 39.687 135.494 1.00 93.64 ATOM 212 CB HIS A 517 367.858 38.974 136.875 1.00 97.79 ATOM 213 CG HIS A 517 367.319 38.273 138.068 1.00 97.34 ATOM 214 ND1 HIS A 517 368.117 37.522 138.900 1.00101.00 ATOM 215 CD2 HIS A 517 366.074 38.225 138.590 1.00 93.78 ATOM 216 CE1 HIS A 517 367.384 37.034 139.880 1.00 97.44 ATOM 217 NE2 HIS A 517 366.145 37.451 139.715 1.00 88.12 ATOM 218 N THR A 518 369.111 41.165 135.214 1.00 86.84 ATOM 219 CA THR A 518 369.621 41.749 133.982 1.00 91.77 ATOM 220 C THR A 518 370.060 43.185 134.264 1.00103.25 ATOM 221 O THR A 518 369.365 44.150 133.949 1.00103.00 ATOM 222 CB THR A 518 368.560 41.671 132.893 1.00 94.92 ATOM 223 N GLY A 519 371.224 43.311 134.900 1.00 77.61 ATOM 224 CA GLY A 519 371.831 44.597 135.228 1.00 64.15 ATOM 225 C GLY A 519 371.714 45.720 134.211 1.00 59.79 ATOM 226 O GLY A 519 371.041 46.724 134.455 1.00 63.08 ATOM 227 ZN ZN A 604 364.184 37.961 139.619 1.00 42.07 TER