HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEL TITLE Crystal structure of CTCF ZFs6-11-gb7CSE COMPND MOL_ID: 2; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 FRAGMENT: UNP residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.96 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 116 DBREF 5YEL B 405 580 UNP P49711 CTCF_HUMAN 405 580 SEQRES 1 B 30 ASN GLU LYS ARG PHE LYS CYS ASP GLN CYS ASP TYR ALA SEQRES 2 B 30 SER ARG GLN GLU ARG HIS MET ILE MET HIS LYS ARG THR SEQRES 3 B 30 HIS THR GLY GLU ATOM 1 N ASN B 491 363.115 26.613 109.346 1.00107.88 ATOM 2 CA ASN B 491 364.532 26.717 109.051 1.00 94.52 ATOM 3 C ASN B 491 365.021 28.017 109.632 1.00 88.44 ATOM 4 O ASN B 491 365.799 28.727 109.016 1.00 85.63 ATOM 5 CB ASN B 491 364.778 26.669 107.555 1.00 78.95 ATOM 6 N GLU B 492 364.521 28.331 110.815 1.00 58.49 ATOM 7 CA GLU B 492 364.879 29.540 111.526 1.00 77.25 ATOM 8 C GLU B 492 364.966 29.131 112.969 1.00 97.15 ATOM 9 O GLU B 492 364.415 28.107 113.334 1.00 95.63 ATOM 10 CB GLU B 492 363.816 30.602 111.334 1.00 89.70 ATOM 11 N LYS B 493 365.654 29.904 113.795 1.00110.51 ATOM 12 CA LYS B 493 365.791 29.513 115.184 1.00104.52 ATOM 13 C LYS B 493 364.572 30.013 115.927 1.00102.13 ATOM 14 O LYS B 493 364.440 31.189 116.216 1.00113.34 ATOM 15 CB LYS B 493 367.073 30.087 115.777 1.00106.38 ATOM 16 N ARG B 494 363.687 29.079 116.236 1.00108.47 ATOM 17 CA ARG B 494 362.330 29.370 116.658 1.00 85.76 ATOM 18 C ARG B 494 362.065 29.251 118.137 1.00 76.74 ATOM 19 O ARG B 494 360.929 29.365 118.557 1.00 80.17 ATOM 20 CB ARG B 494 361.333 28.471 115.924 1.00 96.91 ATOM 21 CG ARG B 494 361.925 27.389 115.031 1.00 88.38 ATOM 22 CD ARG B 494 361.048 26.155 115.008 1.00 75.38 ATOM 23 NE ARG B 494 360.258 26.080 113.788 1.00 75.65 ATOM 24 CZ ARG B 494 360.015 24.957 113.125 1.00 88.71 ATOM 25 NH1 ARG B 494 360.508 23.809 113.559 1.00 91.50 ATOM 26 NH2 ARG B 494 359.279 24.983 112.027 1.00103.29 ATOM 27 N PHE B 495 363.106 28.997 118.915 1.00 68.33 ATOM 28 CA PHE B 495 362.953 28.819 120.348 1.00 58.91 ATOM 29 C PHE B 495 363.952 29.658 121.131 1.00 69.92 ATOM 30 O PHE B 495 364.900 29.141 121.693 1.00 85.52 ATOM 31 CB PHE B 495 363.126 27.355 120.715 1.00 53.45 ATOM 32 CG PHE B 495 361.985 26.480 120.307 1.00 58.32 ATOM 33 CD1 PHE B 495 362.027 25.779 119.128 1.00 70.51 ATOM 34 CD2 PHE B 495 360.895 26.327 121.121 1.00 53.75 ATOM 35 CE1 PHE B 495 360.993 24.956 118.758 1.00 64.32 ATOM 36 CE2 PHE B 495 359.855 25.508 120.756 1.00 59.01 ATOM 37 CZ PHE B 495 359.905 24.821 119.574 1.00 53.36 ATOM 38 N LYS B 496 363.728 30.955 121.189 1.00 56.12 ATOM 39 CA LYS B 496 364.651 31.828 121.879 1.00 70.93 ATOM 40 C LYS B 496 364.628 31.499 123.361 1.00 85.54 ATOM 41 O LYS B 496 363.639 30.986 123.859 1.00 89.40 ATOM 42 CB LYS B 496 364.282 33.288 121.637 1.00 92.62 ATOM 43 N CYS B 497 365.736 31.752 124.051 1.00 89.43 ATOM 44 CA CYS B 497 365.857 31.437 125.470 1.00 84.59 ATOM 45 C CYS B 497 365.821 32.720 126.275 1.00 88.72 ATOM 46 O CYS B 497 366.472 33.694 125.922 1.00 82.52 ATOM 47 CB CYS B 497 367.145 30.661 125.753 1.00 86.52 ATOM 48 SG CYS B 497 367.976 31.027 127.322 1.00 90.11 ATOM 49 N ASP B 498 365.017 32.719 127.333 1.00 95.89 ATOM 50 CA ASP B 498 364.843 33.892 128.186 1.00 99.12 ATOM 51 C ASP B 498 366.063 34.372 128.969 1.00102.15 ATOM 52 O ASP B 498 366.358 35.560 128.983 1.00106.33 ATOM 53 CB ASP B 498 363.733 33.604 129.190 1.00 90.75 ATOM 54 CG ASP B 498 363.788 32.196 129.710 1.00 90.64 ATOM 55 OD1 ASP B 498 364.311 31.347 128.974 1.00 98.71 ATOM 56 OD2 ASP B 498 363.323 31.938 130.834 1.00 83.04 ATOM 57 N GLN B 499 366.764 33.458 129.625 1.00106.15 ATOM 58 CA GLN B 499 367.929 33.824 130.433 1.00107.92 ATOM 59 C GLN B 499 369.147 34.325 129.660 1.00102.49 ATOM 60 O GLN B 499 369.820 35.251 130.078 1.00102.60 ATOM 61 CB GLN B 499 368.297 32.702 131.398 1.00103.44 ATOM 62 CG GLN B 499 367.122 32.253 132.246 1.00 99.63 ATOM 63 CD GLN B 499 367.540 31.698 133.588 1.00101.92 ATOM 64 OE1 GLN B 499 368.666 31.898 134.031 1.00110.54 ATOM 65 NE2 GLN B 499 366.632 30.996 134.243 1.00 90.44 ATOM 66 N CYS B 500 369.418 33.688 128.532 1.00 86.77 ATOM 67 CA CYS B 500 370.595 33.957 127.725 1.00 69.57 ATOM 68 C CYS B 500 370.154 33.997 126.278 1.00 73.09 ATOM 69 O CYS B 500 369.023 33.665 125.980 1.00 89.41 ATOM 70 CB CYS B 500 371.683 32.915 127.966 1.00 58.45 ATOM 71 SG CYS B 500 371.463 31.332 127.156 1.00 47.17 ATOM 72 N ASP B 501 371.015 34.447 125.383 1.00 62.43 ATOM 73 CA ASP B 501 370.596 34.724 124.021 1.00 63.60 ATOM 74 C ASP B 501 370.747 33.559 123.046 1.00 63.87 ATOM 75 O ASP B 501 370.697 33.745 121.842 1.00 60.61 ATOM 76 CB ASP B 501 371.297 35.953 123.488 1.00 69.47 ATOM 77 CG ASP B 501 372.745 35.729 123.298 1.00 88.92 ATOM 78 OD1 ASP B 501 373.392 35.286 124.262 1.00102.41 ATOM 79 OD2 ASP B 501 373.238 35.984 122.187 1.00 98.76 ATOM 80 N TYR B 502 370.981 32.368 123.570 1.00 59.13 ATOM 81 CA TYR B 502 371.025 31.157 122.761 1.00 62.97 ATOM 82 C TYR B 502 369.668 30.865 122.138 1.00 77.74 ATOM 83 O TYR B 502 368.651 31.103 122.765 1.00 85.88 ATOM 84 CB TYR B 502 371.436 29.995 123.655 1.00 61.39 ATOM 85 CG TYR B 502 371.346 28.627 123.038 1.00 54.48 ATOM 86 CD1 TYR B 502 370.545 27.658 123.593 1.00 57.00 ATOM 87 CD2 TYR B 502 372.083 28.300 121.923 1.00 45.51 ATOM 88 CE1 TYR B 502 370.464 26.407 123.044 1.00 52.18 ATOM 89 CE2 TYR B 502 372.005 27.050 121.369 1.00 40.82 ATOM 90 CZ TYR B 502 371.194 26.112 121.940 1.00 52.39 ATOM 91 OH TYR B 502 371.111 24.863 121.403 1.00 63.34 ATOM 92 N ALA B 503 369.650 30.362 120.905 1.00 80.15 ATOM 93 CA ALA B 503 368.404 29.985 120.241 1.00 70.47 ATOM 94 C ALA B 503 368.496 28.617 119.609 1.00 65.13 ATOM 95 O ALA B 503 369.520 28.271 119.053 1.00 77.34 ATOM 96 CB ALA B 503 368.043 31.001 119.186 1.00 69.35 ATOM 97 N SER B 504 367.418 27.847 119.668 1.00 59.36 ATOM 98 CA SER B 504 367.414 26.499 119.117 1.00 62.30 ATOM 99 C SER B 504 366.345 26.275 118.060 1.00 74.79 ATOM 100 O SER B 504 365.204 26.644 118.246 1.00 76.36 ATOM 101 CB SER B 504 367.297 25.468 120.244 1.00 73.73 ATOM 102 OG SER B 504 366.024 24.854 120.330 1.00 72.07 ATOM 103 N ARG B 505 366.720 25.656 116.955 1.00 75.21 ATOM 104 CA ARG B 505 365.757 25.260 115.943 1.00 75.76 ATOM 105 C ARG B 505 364.780 24.217 116.471 1.00 81.69 ATOM 106 O ARG B 505 363.622 24.208 116.101 1.00 74.90 ATOM 107 CB ARG B 505 366.460 24.753 114.691 1.00 77.61 ATOM 108 N GLN B 506 365.270 23.308 117.302 1.00 77.83 ATOM 109 CA GLN B 506 364.445 22.247 117.862 1.00 64.85 ATOM 110 C GLN B 506 364.281 22.454 119.345 1.00 71.68 ATOM 111 O GLN B 506 365.198 22.887 120.018 1.00 82.90 ATOM 112 CB GLN B 506 365.059 20.877 117.610 1.00 46.06 ATOM 113 CG GLN B 506 365.646 20.705 116.226 1.00 56.16 ATOM 114 CD GLN B 506 365.875 19.258 115.877 1.00 70.63 ATOM 115 OE1 GLN B 506 366.472 18.516 116.643 1.00 65.98 ATOM 116 NE2 GLN B 506 365.401 18.849 114.718 1.00 81.66 ATOM 117 N GLU B 507 363.094 22.176 119.854 1.00 65.55 ATOM 118 CA GLU B 507 362.823 22.401 121.255 1.00 72.84 ATOM 119 C GLU B 507 363.692 21.550 122.166 1.00 88.51 ATOM 120 O GLU B 507 364.166 22.024 123.190 1.00 95.41 ATOM 121 CB GLU B 507 361.350 22.161 121.557 1.00 76.74 ATOM 122 CG GLU B 507 360.962 22.499 122.983 1.00 86.43 ATOM 123 CD GLU B 507 359.494 22.821 123.127 1.00 95.25 ATOM 124 OE1 GLU B 507 359.156 23.672 123.972 1.00101.15 ATOM 125 OE2 GLU B 507 358.683 22.221 122.397 1.00 92.35 ATOM 126 N ARG B 508 363.910 20.293 121.812 1.00 79.68 ATOM 127 CA ARG B 508 364.605 19.408 122.727 1.00 65.68 ATOM 128 C ARG B 508 365.898 20.064 123.155 1.00 66.76 ATOM 129 O ARG B 508 366.271 20.030 124.315 1.00 60.91 ATOM 130 CB ARG B 508 364.921 18.088 122.031 1.00 59.42 ATOM 131 CG ARG B 508 365.634 18.232 120.694 1.00 49.97 ATOM 132 CD ARG B 508 366.215 16.907 120.240 1.00 39.46 ATOM 133 NE ARG B 508 366.675 16.929 118.859 1.00 39.11 ATOM 134 CZ ARG B 508 367.234 15.893 118.253 1.00 40.82 ATOM 135 NH1 ARG B 508 367.406 14.768 118.910 1.00 49.33 ATOM 136 NH2 ARG B 508 367.632 15.979 117.002 1.00 39.79 ATOM 137 N HIS B 509 366.567 20.689 122.205 1.00 71.67 ATOM 138 CA HIS B 509 367.803 21.372 122.477 1.00 64.19 ATOM 139 C HIS B 509 367.559 22.493 123.443 1.00 68.71 ATOM 140 O HIS B 509 368.381 22.757 124.300 1.00 84.03 ATOM 141 CB HIS B 509 368.403 21.915 121.195 1.00 55.71 ATOM 142 CG HIS B 509 368.726 20.858 120.196 1.00 51.87 ATOM 143 ND1 HIS B 509 368.692 19.521 120.503 1.00 57.05 ATOM 144 CD2 HIS B 509 369.077 20.937 118.894 1.00 44.06 ATOM 145 CE1 HIS B 509 369.017 18.819 119.436 1.00 60.77 ATOM 146 NE2 HIS B 509 369.252 19.654 118.445 1.00 52.32 ATOM 147 N MET B 510 366.439 23.179 123.295 1.00 60.44 ATOM 148 CA MET B 510 366.170 24.307 124.161 1.00 64.54 ATOM 149 C MET B 510 366.069 23.829 125.583 1.00 69.86 ATOM 150 O MET B 510 366.543 24.484 126.497 1.00 79.32 ATOM 151 CB MET B 510 364.900 25.033 123.762 1.00 69.62 ATOM 152 CG MET B 510 364.806 26.426 124.352 1.00 71.82 ATOM 153 SD MET B 510 366.281 27.391 124.030 1.00 76.13 ATOM 154 CE MET B 510 366.116 28.728 125.199 1.00 80.52 ATOM 155 N ILE B 511 365.449 22.679 125.775 1.00 70.26 ATOM 156 CA ILE B 511 365.333 22.146 127.114 1.00 72.69 ATOM 157 C ILE B 511 366.696 21.853 127.715 1.00 78.09 ATOM 158 O ILE B 511 366.933 22.177 128.872 1.00 83.43 ATOM 159 CB ILE B 511 364.502 20.865 127.133 1.00 78.39 ATOM 160 CG1 ILE B 511 363.092 21.153 126.636 1.00 72.40 ATOM 161 CG2 ILE B 511 364.447 20.301 128.537 1.00 76.51 ATOM 162 CD1 ILE B 511 362.806 20.580 125.277 1.00 70.74 ATOM 163 N MET B 512 367.601 21.262 126.939 1.00 73.92 ATOM 164 CA MET B 512 368.915 20.970 127.476 1.00 57.39 ATOM 165 C MET B 512 369.624 22.247 127.847 1.00 59.24 ATOM 166 O MET B 512 370.194 22.353 128.913 1.00 64.63 ATOM 167 CB MET B 512 369.793 20.220 126.485 1.00 48.32 ATOM 168 CG MET B 512 369.090 19.347 125.477 1.00 50.66 ATOM 169 SD MET B 512 370.225 18.799 124.192 1.00 48.36 ATOM 170 CE MET B 512 371.399 20.135 124.128 1.00 60.92 ATOM 171 N HIS B 513 369.548 23.247 126.990 1.00 52.14 ATOM 172 CA HIS B 513 370.316 24.449 127.211 1.00 57.46 ATOM 173 C HIS B 513 369.853 25.014 128.510 1.00 79.78 ATOM 174 O HIS B 513 370.632 25.553 129.278 1.00 88.79 ATOM 175 CB HIS B 513 370.077 25.476 126.129 1.00 58.78 ATOM 176 CG HIS B 513 370.726 26.795 126.404 1.00 68.84 ATOM 177 ND1 HIS B 513 372.028 27.064 126.060 1.00 69.18 ATOM 178 CD2 HIS B 513 370.255 27.919 126.994 1.00 76.37 ATOM 179 CE1 HIS B 513 372.332 28.297 126.416 1.00 78.48 ATOM 180 NE2 HIS B 513 371.270 28.842 126.977 1.00 80.30 ATOM 181 N LYS B 514 368.566 24.880 128.765 1.00 88.07 ATOM 182 CA LYS B 514 367.973 25.513 129.919 1.00 98.58 ATOM 183 C LYS B 514 368.696 24.975 131.122 1.00 90.47 ATOM 184 O LYS B 514 368.974 25.700 132.064 1.00 80.71 ATOM 185 CB LYS B 514 366.487 25.177 130.003 1.00102.18 ATOM 186 CG LYS B 514 365.578 26.296 129.526 1.00106.78 ATOM 187 CD LYS B 514 364.137 25.831 129.415 1.00115.53 ATOM 188 CE LYS B 514 363.384 26.614 128.349 1.00117.36 ATOM 189 NZ LYS B 514 362.470 25.746 127.553 1.00119.38 ATOM 190 N ARG B 515 369.039 23.702 131.067 1.00 82.87 ATOM 191 CA ARG B 515 369.565 23.008 132.223 1.00 71.35 ATOM 192 C ARG B 515 370.833 23.656 132.719 1.00 72.50 ATOM 193 O ARG B 515 371.093 23.655 133.913 1.00 78.23 ATOM 194 CB ARG B 515 369.777 21.531 131.923 1.00 65.68 ATOM 195 CG ARG B 515 368.522 20.862 131.403 1.00 69.93 ATOM 196 CD ARG B 515 368.475 19.393 131.750 1.00 60.24 ATOM 197 NE ARG B 515 368.142 18.587 130.587 1.00 57.62 ATOM 198 CZ ARG B 515 367.009 17.922 130.455 1.00 75.98 ATOM 199 NH1 ARG B 515 366.110 17.976 131.418 1.00 85.68 ATOM 200 NH2 ARG B 515 366.775 17.206 129.371 1.00 80.34 ATOM 201 N THR B 516 371.631 24.200 131.816 1.00 78.98 ATOM 202 CA THR B 516 372.855 24.847 132.250 1.00 87.18 ATOM 203 C THR B 516 372.479 25.998 133.187 1.00 97.09 ATOM 204 O THR B 516 373.115 26.178 134.219 1.00 92.69 ATOM 205 CB THR B 516 373.762 25.311 131.068 1.00 80.01 ATOM 206 OG1 THR B 516 373.750 26.736 130.925 1.00 94.21 ATOM 207 CG2 THR B 516 373.339 24.696 129.752 1.00 76.02 ATOM 208 N HIS B 517 371.464 26.782 132.821 1.00 96.84 ATOM 209 CA HIS B 517 370.947 27.840 133.693 1.00 90.41 ATOM 210 C HIS B 517 370.224 27.362 134.943 1.00 84.29 ATOM 211 O HIS B 517 370.500 27.792 136.052 1.00 80.30 ATOM 212 CB HIS B 517 369.960 28.684 132.908 1.00 92.79 ATOM 213 CG HIS B 517 370.568 29.398 131.754 1.00 94.78 ATOM 214 ND1 HIS B 517 371.775 30.050 131.842 1.00101.66 ATOM 215 CD2 HIS B 517 370.134 29.571 130.487 1.00 95.45 ATOM 216 CE1 HIS B 517 372.061 30.593 130.675 1.00101.47 ATOM 217 NE2 HIS B 517 371.082 30.314 129.838 1.00 98.54 ATOM 218 N THR B 518 369.318 26.426 134.736 1.00 84.00 ATOM 219 CA THR B 518 368.569 25.773 135.803 1.00 86.20 ATOM 220 C THR B 518 369.124 24.365 135.994 1.00103.15 ATOM 221 O THR B 518 368.537 23.371 135.567 1.00108.36 ATOM 222 CB THR B 518 367.078 25.763 135.477 1.00 80.92 ATOM 223 N GLY B 519 370.289 24.297 136.637 1.00 74.53 ATOM 224 CA GLY B 519 370.969 23.047 136.947 1.00 55.65 ATOM 225 C GLY B 519 370.102 21.868 137.347 1.00 54.33 ATOM 226 O GLY B 519 369.835 20.982 136.537 1.00 67.42 ATOM 227 ZN ZN B 604 369.987 29.936 128.142 1.00110.68 TER