HEADER SIGNALING PROTEIN 31-DEC-69 5YWR TITLE Crystal Structure of RING E3 ligase ZNRF1 in complex with Ube2N TITLE 2 (Ubc13) COMPND MOL_ID: 2; COMPND 2 MOLECULE: E3 ubiquitin-protein ligase ZNRF1; COMPND 3 CHAIN: B; COMPND 4 EC: 2.3.2.27; COMPND 5 ENGINEERED: YES; COMPND 6 First 137 amino acids deleted from the protein; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.47 ANGSTORMS DBREF 5YWR B 139 227 UNP Q8ND25 ZNRF1_HUMAN 139 227 SEQRES 1 B 29 SER GLY PHE LYS CYS PRO ILE CYS SER LYS SER VAL ALA SEQRES 2 B 29 SER ASP GLU MET GLU MET HIS PHE ILE MET CYS LEU SER SEQRES 3 B 29 LYS PRO ARG ATOM 1 N SER B 141 18.610 20.016 -2.816 1.00 51.09 ATOM 2 CA SER B 141 18.006 18.730 -2.483 1.00 36.34 ATOM 3 C SER B 141 17.814 17.885 -3.738 1.00 48.43 ATOM 4 O SER B 141 17.902 18.393 -4.856 1.00 52.00 ATOM 5 CB SER B 141 16.663 18.937 -1.776 1.00 40.24 ATOM 6 OG SER B 141 15.738 19.612 -2.619 1.00 39.93 ATOM 7 N GLY B 142 17.558 16.593 -3.546 1.00 33.86 ATOM 8 CA GLY B 142 17.280 15.694 -4.651 1.00 34.72 ATOM 9 C GLY B 142 16.567 14.433 -4.203 1.00 27.35 ATOM 10 O GLY B 142 15.518 14.502 -3.553 1.00 27.55 ATOM 11 N PHE B 143 17.129 13.272 -4.531 1.00 18.77 ATOM 12 CA PHE B 143 16.538 11.993 -4.163 1.00 17.75 ATOM 13 C PHE B 143 17.563 11.154 -3.418 1.00 15.16 ATOM 14 O PHE B 143 18.672 10.932 -3.913 1.00 17.28 ATOM 15 CB PHE B 143 15.990 11.279 -5.402 1.00 20.77 ATOM 16 CG PHE B 143 14.925 12.069 -6.092 1.00 18.43 ATOM 17 CD1 PHE B 143 13.609 11.981 -5.676 1.00 20.85 ATOM 18 CD2 PHE B 143 15.249 12.959 -7.101 1.00 21.17 ATOM 19 CE1 PHE B 143 12.625 12.738 -6.281 1.00 20.94 ATOM 20 CE2 PHE B 143 14.271 13.716 -7.713 1.00 23.27 ATOM 21 CZ PHE B 143 12.955 13.606 -7.301 1.00 25.09 ATOM 22 N LYS B 144 17.181 10.691 -2.232 1.00 18.94 ATOM 23 CA LYS B 144 18.105 10.067 -1.297 1.00 15.78 ATOM 24 C LYS B 144 18.265 8.584 -1.607 1.00 20.05 ATOM 25 O LYS B 144 17.274 7.854 -1.716 1.00 17.48 ATOM 26 CB LYS B 144 17.581 10.244 0.127 1.00 16.57 ATOM 27 CG LYS B 144 18.543 9.803 1.205 1.00 15.88 ATOM 28 CD LYS B 144 17.981 10.127 2.575 1.00 20.67 ATOM 29 CE LYS B 144 19.005 9.879 3.663 1.00 30.76 ATOM 30 NZ LYS B 144 18.468 10.253 5.000 1.00 40.47 ATOM 31 N CYS B 145 19.512 8.146 -1.743 1.00 15.88 ATOM 32 CA CYS B 145 19.805 6.730 -1.924 1.00 14.88 ATOM 33 C CYS B 145 19.684 6.028 -0.580 1.00 15.67 ATOM 34 O CYS B 145 20.358 6.426 0.377 1.00 15.56 ATOM 35 CB CYS B 145 21.224 6.565 -2.443 1.00 15.44 ATOM 36 SG CYS B 145 21.797 4.855 -2.516 1.00 15.41 ATOM 37 N PRO B 146 18.851 4.992 -0.452 1.00 15.78 ATOM 38 CA PRO B 146 18.736 4.319 0.848 1.00 18.57 ATOM 39 C PRO B 146 19.967 3.522 1.223 1.00 16.54 ATOM 40 O PRO B 146 20.121 3.183 2.401 1.00 17.88 ATOM 41 CB PRO B 146 17.512 3.412 0.674 1.00 22.74 ATOM 42 CG PRO B 146 17.474 3.130 -0.762 1.00 24.14 ATOM 43 CD PRO B 146 17.967 4.384 -1.461 1.00 16.60 ATOM 44 N ILE B 147 20.854 3.234 0.270 1.00 15.48 ATOM 45 CA ILE B 147 22.031 2.427 0.572 1.00 12.65 ATOM 46 C ILE B 147 23.120 3.270 1.229 1.00 12.62 ATOM 47 O ILE B 147 23.699 2.876 2.247 1.00 15.46 ATOM 48 CB ILE B 147 22.522 1.706 -0.696 1.00 13.21 ATOM 49 CG1 ILE B 147 21.444 0.734 -1.186 1.00 14.63 ATOM 50 CG2 ILE B 147 23.826 0.973 -0.426 1.00 14.28 ATOM 51 CD1 ILE B 147 21.722 0.127 -2.546 1.00 15.97 ATOM 52 N CYS B 148 23.395 4.457 0.683 1.00 14.16 ATOM 53 CA CYS B 148 24.494 5.282 1.165 1.00 14.82 ATOM 54 C CYS B 148 24.060 6.644 1.688 1.00 14.09 ATOM 55 O CYS B 148 24.913 7.403 2.168 1.00 15.20 ATOM 56 CB CYS B 148 25.552 5.465 0.069 1.00 14.66 ATOM 57 SG CYS B 148 25.058 6.657 -1.186 1.00 16.45 ATOM 58 N SER B 149 22.775 6.979 1.603 1.00 16.82 ATOM 59 CA SER B 149 22.168 8.203 2.129 1.00 15.58 ATOM 60 C SER B 149 22.482 9.455 1.305 1.00 16.17 ATOM 61 O SER B 149 21.984 10.538 1.648 1.00 18.61 ATOM 62 CB SER B 149 22.451 8.444 3.623 1.00 17.11 ATOM 63 OG SER B 149 22.031 7.330 4.398 1.00 21.21 ATOM 64 N LYS B 150 23.274 9.349 0.237 1.00 17.90 ATOM 65 CA LYS B 150 23.567 10.501 -0.606 0.43 17.62 ATOM 66 C LYS B 150 22.333 10.883 -1.414 1.00 17.47 ATOM 67 O LYS B 150 21.580 10.017 -1.872 1.00 20.84 ATOM 68 CB LYS B 150 24.719 10.158 -1.555 0.43 24.68 ATOM 69 CG LYS B 150 25.092 11.244 -2.563 0.43 31.50 ATOM 70 CD LYS B 150 26.061 10.695 -3.610 0.43 27.62 ATOM 71 CE LYS B 150 26.478 11.752 -4.624 0.43 29.68 ATOM 72 NZ LYS B 150 27.509 12.677 -4.079 0.43 34.58 ATOM 73 N SER B 151 22.124 12.186 -1.582 1.00 21.91 ATOM 74 CA SER B 151 21.050 12.698 -2.420 1.00 17.38 ATOM 75 C SER B 151 21.617 13.027 -3.794 1.00 18.72 ATOM 76 O SER B 151 22.671 13.665 -3.900 1.00 26.64 ATOM 77 CB SER B 151 20.407 13.940 -1.801 1.00 33.18 ATOM 78 OG SER B 151 19.560 13.581 -0.721 1.00 39.81 ATOM 79 N VAL B 152 20.921 12.583 -4.839 1.00 17.38 ATOM 80 CA VAL B 152 21.351 12.794 -6.212 1.00 21.17 ATOM 81 C VAL B 152 20.184 13.338 -7.023 1.00 21.89 ATOM 82 O VAL B 152 19.014 13.185 -6.662 1.00 24.53 ATOM 83 CB VAL B 152 21.911 11.509 -6.863 1.00 29.50 ATOM 84 CG1 VAL B 152 23.151 11.031 -6.122 1.00 24.90 ATOM 85 CG2 VAL B 152 20.848 10.424 -6.883 1.00 24.08 ATOM 86 N ALA B 153 20.523 13.984 -8.135 1.00 20.98 ATOM 87 CA ALA B 153 19.510 14.472 -9.054 1.00 22.40 ATOM 88 C ALA B 153 18.819 13.299 -9.741 1.00 21.53 ATOM 89 O ALA B 153 19.339 12.182 -9.795 1.00 20.80 ATOM 90 CB ALA B 153 20.148 15.384 -10.101 1.00 23.56 ATOM 91 N SER B 154 17.624 13.565 -10.274 1.00 20.08 ATOM 92 CA SER B 154 16.843 12.491 -10.881 1.00 19.70 ATOM 93 C SER B 154 17.569 11.862 -12.064 1.00 22.64 ATOM 94 O SER B 154 17.452 10.652 -12.286 1.00 24.03 ATOM 95 CB SER B 154 15.460 12.996 -11.293 1.00 25.94 ATOM 96 OG SER B 154 15.547 13.880 -12.394 1.00 25.16 ATOM 97 N ASP B 155 18.336 12.654 -12.817 1.00 23.09 ATOM 98 CA ASP B 155 19.074 12.139 -13.967 1.00 21.33 ATOM 99 C ASP B 155 20.392 11.463 -13.595 1.00 23.12 ATOM 100 O ASP B 155 21.056 10.917 -14.483 1.00 27.84 ATOM 101 CB ASP B 155 19.278 13.226 -15.035 1.00 27.38 ATOM 102 CG ASP B 155 20.254 14.317 -14.606 1.00 32.66 ATOM 103 OD1 ASP B 155 20.626 14.379 -13.418 1.00 36.99 ATOM 104 OD2 ASP B 155 20.649 15.126 -15.474 1.00 58.07 ATOM 105 N GLU B 156 20.790 11.491 -12.321 1.00 19.39 ATOM 106 CA GLU B 156 21.935 10.731 -11.826 1.00 20.81 ATOM 107 C GLU B 156 21.503 9.508 -11.040 1.00 18.99 ATOM 108 O GLU B 156 22.350 8.699 -10.646 1.00 17.09 ATOM 109 CB GLU B 156 22.804 11.606 -10.910 1.00 23.83 ATOM 110 CG GLU B 156 23.312 12.894 -11.541 1.00 30.61 ATOM 111 CD GLU B 156 23.799 13.898 -10.504 1.00 53.24 ATOM 112 OE1 GLU B 156 23.403 13.781 -9.323 1.00 39.16 ATOM 113 OE2 GLU B 156 24.577 14.804 -10.869 1.00 50.43 ATOM 114 N MET B 157 20.201 9.362 -10.826 1.00 17.93 ATOM 115 CA MET B 157 19.674 8.386 -9.888 1.00 17.79 ATOM 116 C MET B 157 19.931 6.961 -10.357 1.00 16.67 ATOM 117 O MET B 157 20.341 6.102 -9.564 1.00 17.30 ATOM 118 CB MET B 157 18.180 8.643 -9.764 1.00 27.11 ATOM 119 CG MET B 157 17.530 8.001 -8.599 1.00 24.08 ATOM 120 SD MET B 157 15.915 8.757 -8.396 1.00 19.68 ATOM 121 CE MET B 157 15.250 7.662 -7.158 1.00 20.07 ATOM 122 N GLU B 158 19.689 6.690 -11.641 1.00 16.25 ATOM 123 CA GLU B 158 19.840 5.335 -12.161 1.00 15.45 ATOM 124 C GLU B 158 21.278 4.846 -12.028 1.00 18.28 ATOM 125 O GLU B 158 21.529 3.765 -11.479 1.00 18.38 ATOM 126 CB GLU B 158 19.366 5.278 -13.617 1.00 15.21 ATOM 127 CG GLU B 158 19.574 3.929 -14.290 1.00 16.90 ATOM 128 CD GLU B 158 18.667 3.719 -15.486 1.00 21.28 ATOM 129 OE1 GLU B 158 17.757 4.547 -15.699 1.00 20.61 ATOM 130 OE2 GLU B 158 18.857 2.721 -16.212 1.00 20.94 ATOM 131 N MET B 159 22.234 5.629 -12.539 0.43 16.09 ATOM 132 CA MET B 159 23.640 5.245 -12.452 0.43 16.10 ATOM 133 C MET B 159 24.091 5.117 -11.004 0.43 15.71 ATOM 134 O MET B 159 24.827 4.187 -10.653 0.43 14.40 ATOM 135 CB MET B 159 24.512 6.261 -13.191 0.43 16.50 ATOM 136 CG MET B 159 24.440 6.179 -14.709 0.43 28.95 ATOM 137 SD MET B 159 25.044 4.607 -15.361 0.43 48.44 ATOM 138 CE MET B 159 23.506 3.732 -15.640 0.43 18.52 ATOM 139 N HIS B 160 23.656 6.042 -10.146 1.00 16.88 ATOM 140 CA HIS B 160 24.063 5.995 -8.746 1.00 12.38 ATOM 141 C HIS B 160 23.535 4.743 -8.062 1.00 15.66 ATOM 142 O HIS B 160 24.281 4.037 -7.372 1.00 17.22 ATOM 143 CB HIS B 160 23.586 7.233 -7.986 1.00 16.23 ATOM 144 CG HIS B 160 23.906 7.173 -6.526 1.00 17.04 ATOM 145 ND1 HIS B 160 25.002 7.805 -5.980 1.00 20.81 ATOM 146 CD2 HIS B 160 23.310 6.506 -5.509 1.00 15.64 ATOM 147 CE1 HIS B 160 25.054 7.549 -4.685 1.00 18.45 ATOM 148 NE2 HIS B 160 24.040 6.761 -4.373 1.00 14.85 ATOM 149 N PHE B 161 22.238 4.470 -8.217 1.00 16.07 ATOM 150 CA PHE B 161 21.642 3.334 -7.522 1.00 15.76 ATOM 151 C PHE B 161 22.251 2.021 -8.002 1.00 20.00 ATOM 152 O PHE B 161 22.524 1.121 -7.197 1.00 17.96 ATOM 153 CB PHE B 161 20.121 3.344 -7.699 1.00 15.53 ATOM 154 CG PHE B 161 19.391 4.284 -6.758 1.00 14.32 ATOM 155 CD1 PHE B 161 19.850 5.575 -6.523 1.00 15.33 ATOM 156 CD2 PHE B 161 18.223 3.874 -6.129 1.00 16.19 ATOM 157 CE1 PHE B 161 19.161 6.429 -5.671 1.00 17.07 ATOM 158 CE2 PHE B 161 17.532 4.720 -5.279 1.00 16.05 ATOM 159 CZ PHE B 161 18.002 6.003 -5.048 1.00 18.70 ATOM 160 N ILE B 162 22.489 1.899 -9.311 1.00 16.81 ATOM 161 CA ILE B 162 23.156 0.711 -9.837 1.00 17.46 ATOM 162 C ILE B 162 24.528 0.534 -9.194 1.00 23.53 ATOM 163 O ILE B 162 24.903 -0.577 -8.796 1.00 18.48 ATOM 164 CB ILE B 162 23.227 0.767 -11.375 1.00 18.05 ATOM 165 CG1 ILE B 162 21.822 0.652 -11.966 1.00 20.64 ATOM 166 CG2 ILE B 162 24.122 -0.336 -11.921 1.00 19.86 ATOM 167 CD1 ILE B 162 21.758 0.924 -13.446 1.00 20.24 ATOM 168 N MET B 163 25.287 1.625 -9.059 1.00 18.47 ATOM 169 CA MET B 163 26.609 1.538 -8.443 1.00 21.03 ATOM 170 C MET B 163 26.518 1.072 -6.996 1.00 17.76 ATOM 171 O MET B 163 27.266 0.184 -6.570 1.00 21.24 ATOM 172 CB MET B 163 27.332 2.883 -8.532 1.00 20.64 ATOM 173 CG MET B 163 28.650 2.917 -7.764 1.00 22.37 ATOM 174 SD MET B 163 29.844 1.697 -8.346 1.00 30.45 ATOM 175 CE MET B 163 30.202 2.336 -9.982 1.00 36.64 ATOM 176 N CYS B 164 25.603 1.659 -6.219 1.00 16.15 ATOM 177 CA CYS B 164 25.457 1.248 -4.826 1.00 15.06 ATOM 178 C CYS B 164 24.925 -0.171 -4.688 1.00 16.08 ATOM 179 O CYS B 164 25.138 -0.802 -3.647 1.00 19.51 ATOM 180 CB CYS B 164 24.572 2.228 -4.056 1.00 14.60 ATOM 181 SG CYS B 164 25.473 3.650 -3.393 1.00 16.78 ATOM 182 N LEU B 165 24.237 -0.684 -5.706 1.00 15.74 ATOM 183 CA LEU B 165 23.782 -2.067 -5.691 1.00 17.56 ATOM 184 C LEU B 165 24.857 -3.047 -6.142 1.00 20.37 ATOM 185 O LEU B 165 24.637 -4.262 -6.061 1.00 23.59 ATOM 186 CB LEU B 165 22.542 -2.216 -6.578 1.00 17.12 ATOM 187 CG LEU B 165 21.244 -1.638 -6.012 1.00 19.41 ATOM 188 CD1 LEU B 165 20.236 -1.391 -7.127 1.00 19.87 ATOM 189 CD2 LEU B 165 20.669 -2.584 -4.968 1.00 18.48 ATOM 190 N SER B 166 26.012 -2.559 -6.598 1.00 19.37 ATOM 191 CA SER B 166 27.003 -3.415 -7.238 1.00 20.11 ATOM 192 C SER B 166 28.055 -3.958 -6.279 1.00 24.68 ATOM 193 O SER B 166 28.835 -4.833 -6.675 1.00 27.17 ATOM 194 CB SER B 166 27.701 -2.656 -8.373 1.00 24.03 ATOM 195 OG SER B 166 28.569 -1.656 -7.860 1.00 26.21 ATOM 196 N LYS B 167 28.085 -3.482 -5.039 1.00 22.85 ATOM 197 CA LYS B 167 29.166 -3.780 -4.111 1.00 25.54 ATOM 198 C LYS B 167 28.638 -3.585 -2.698 1.00 20.98 ATOM 199 O LYS B 167 27.710 -2.797 -2.487 1.00 20.75 ATOM 200 CB LYS B 167 30.350 -2.832 -4.349 1.00 25.12 ATOM 201 CG LYS B 167 29.918 -1.376 -4.231 1.00 29.17 ATOM 202 CD LYS B 167 30.975 -0.385 -4.659 1.00 52.76 ATOM 203 CE LYS B 167 30.415 1.030 -4.570 1.00 54.58 ATOM 204 NZ LYS B 167 31.424 2.074 -4.897 1.00 63.02 ATOM 205 N PRO B 168 29.213 -4.270 -1.710 1.00 20.35 ATOM 206 CA PRO B 168 28.778 -4.050 -0.325 1.00 19.19 ATOM 207 C PRO B 168 29.041 -2.616 0.109 1.00 22.73 ATOM 208 O PRO B 168 30.103 -2.050 -0.161 1.00 22.15 ATOM 209 CB PRO B 168 29.637 -5.032 0.481 1.00 21.42 ATOM 210 CG PRO B 168 30.059 -6.072 -0.506 1.00 23.76 ATOM 211 CD PRO B 168 30.214 -5.344 -1.810 1.00 23.23 ATOM 212 N ARG B 169 28.061 -2.032 0.789 1.00 17.17 ATOM 213 CA ARG B 169 28.222 -0.676 1.285 1.00 15.74 ATOM 214 C ARG B 169 29.185 -0.651 2.472 1.00 17.25 ATOM 215 O ARG B 169 29.547 -1.683 3.046 1.00 19.14 ATOM 216 CB ARG B 169 26.868 -0.086 1.676 1.00 18.42 ATOM 217 CG ARG B 169 26.239 -0.713 2.908 1.00 17.63 ATOM 218 CD ARG B 169 24.913 -0.037 3.204 1.00 17.09 ATOM 219 NE ARG B 169 24.295 -0.520 4.434 1.00 21.57 ATOM 220 CZ ARG B 169 23.174 -0.020 4.942 1.00 20.28 ATOM 221 NH1 ARG B 169 22.557 0.983 4.327 1.00 17.63 ATOM 222 NH2 ARG B 169 22.673 -0.512 6.067 1.00 22.77 ATOM 223 ZN ZN B 302 24.055 5.348 -2.820 1.00 16.27 TER