HEADER DNA BINDING PROTEIN 31-DEC-69 5ZB8 TITLE Crystal structure of the novel lesion-specific endonuclease PfuEndoQ TITLE 2 from Pyrococcus furiosus COMPND MOL_ID: 1; COMPND 2 MOLECULE: PfuEndoQ; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.50 ANGSTORMS DBREF 5ZB8 C 3 400 UNP I6V2I0 I6V2I0_9EUR 3 400 SEQRES 1 C 31 THR ALA CYS SER ARG CYS TYR THR LYS TYR THR LEU GLN SEQRES 2 C 31 ASP ALA VAL SER LEU SER TRP LYS CYS PRO LYS CYS GLY SEQRES 3 C 31 GLY ILE ILE LYS LYS ATOM 1 N THR C 247 26.890 0.052 23.359 1.00 24.47 ATOM 2 CA THR C 247 27.310 -1.082 22.550 1.00 20.23 ATOM 3 C THR C 247 28.274 -0.611 21.470 1.00 23.81 ATOM 4 O THR C 247 27.965 0.307 20.704 1.00 24.78 ATOM 5 CB THR C 247 26.098 -1.765 21.919 1.00 22.85 ATOM 6 OG1 THR C 247 25.300 -2.367 22.946 1.00 26.33 ATOM 7 CG2 THR C 247 26.539 -2.836 20.936 1.00 23.92 ATOM 8 N ALA C 248 29.448 -1.235 21.413 1.00 22.37 ATOM 9 CA ALA C 248 30.487 -0.779 20.503 1.00 20.32 ATOM 10 C ALA C 248 31.442 -1.922 20.197 1.00 26.25 ATOM 11 O ALA C 248 31.600 -2.849 20.995 1.00 25.80 ATOM 12 CB ALA C 248 31.257 0.409 21.087 1.00 18.28 ATOM 13 N CYS C 249 32.073 -1.839 19.028 1.00 23.96 ATOM 14 CA CYS C 249 33.140 -2.768 18.687 1.00 23.79 ATOM 15 C CYS C 249 34.299 -2.611 19.663 1.00 27.62 ATOM 16 O CYS C 249 34.672 -1.497 20.035 1.00 26.56 ATOM 17 CB CYS C 249 33.617 -2.526 17.256 1.00 24.13 ATOM 18 SG CYS C 249 35.163 -3.362 16.838 1.00 33.72 ATOM 19 N SER C 250 34.867 -3.736 20.086 1.00 22.04 ATOM 20 CA SER C 250 35.940 -3.697 21.070 1.00 23.54 ATOM 21 C SER C 250 37.297 -3.365 20.463 1.00 28.65 ATOM 22 O SER C 250 38.288 -3.315 21.199 1.00 27.13 ATOM 23 CB SER C 250 36.017 -5.029 21.819 1.00 26.74 ATOM 24 OG SER C 250 36.248 -6.104 20.927 1.00 31.67 ATOM 25 N ARG C 251 37.369 -3.132 19.153 1.00 19.71 ATOM 26 CA ARG C 251 38.621 -2.792 18.490 1.00 26.49 ATOM 27 C ARG C 251 38.636 -1.376 17.935 1.00 32.00 ATOM 28 O ARG C 251 39.595 -0.634 18.166 1.00 36.69 ATOM 29 CB ARG C 251 38.918 -3.790 17.363 1.00 22.96 ATOM 30 CG ARG C 251 40.189 -3.468 16.592 1.00 27.36 ATOM 31 CD ARG C 251 40.865 -4.730 16.091 1.00 31.00 ATOM 32 NE ARG C 251 40.090 -5.400 15.054 1.00 34.55 ATOM 33 CZ ARG C 251 40.188 -6.696 14.778 1.00 32.98 ATOM 34 NH1 ARG C 251 41.018 -7.457 15.478 1.00 30.20 ATOM 35 NH2 ARG C 251 39.453 -7.235 13.816 1.00 39.65 ATOM 36 N CYS C 252 37.601 -0.978 17.195 1.00 30.12 ATOM 37 CA CYS C 252 37.530 0.369 16.646 1.00 29.61 ATOM 38 C CYS C 252 36.597 1.283 17.431 1.00 27.67 ATOM 39 O CYS C 252 36.569 2.488 17.162 1.00 29.13 ATOM 40 CB CYS C 252 37.085 0.325 15.179 1.00 25.03 ATOM 41 SG CYS C 252 35.335 -0.048 14.934 1.00 32.90 ATOM 42 N TYR C 253 35.832 0.739 18.377 1.00 27.13 ATOM 43 CA TYR C 253 34.963 1.471 19.295 1.00 26.51 ATOM 44 C TYR C 253 33.837 2.217 18.591 1.00 25.03 ATOM 45 O TYR C 253 33.222 3.106 19.195 1.00 25.61 ATOM 46 CB TYR C 253 35.769 2.428 20.180 1.00 29.89 ATOM 47 CG TYR C 253 36.907 1.725 20.889 1.00 34.70 ATOM 48 CD1 TYR C 253 36.654 0.734 21.830 1.00 34.29 ATOM 49 CD2 TYR C 253 38.229 2.039 20.607 1.00 36.91 ATOM 50 CE1 TYR C 253 37.688 0.079 22.475 1.00 31.97 ATOM 51 CE2 TYR C 253 39.271 1.390 21.250 1.00 37.82 ATOM 52 CZ TYR C 253 38.992 0.411 22.183 1.00 33.15 ATOM 53 OH TYR C 253 40.017 -0.242 22.828 1.00 44.02 ATOM 54 N THR C 254 33.534 1.869 17.342 1.00 24.44 ATOM 55 CA THR C 254 32.359 2.413 16.676 1.00 25.83 ATOM 56 C THR C 254 31.095 1.989 17.414 1.00 27.48 ATOM 57 O THR C 254 30.943 0.828 17.801 1.00 24.96 ATOM 58 CB THR C 254 32.304 1.928 15.221 1.00 25.63 ATOM 59 OG1 THR C 254 33.444 2.419 14.506 1.00 26.70 ATOM 60 CG2 THR C 254 31.029 2.405 14.533 1.00 20.42 ATOM 61 N LYS C 255 30.181 2.936 17.606 1.00 28.99 ATOM 62 CA LYS C 255 28.948 2.650 18.327 1.00 24.24 ATOM 63 C LYS C 255 27.932 1.970 17.418 1.00 26.99 ATOM 64 O LYS C 255 27.828 2.284 16.229 1.00 32.17 ATOM 65 CB LYS C 255 28.354 3.936 18.902 1.00 32.29 ATOM 66 CG LYS C 255 29.331 4.722 19.754 1.00 34.42 ATOM 67 CD LYS C 255 29.922 3.849 20.843 1.00 40.54 ATOM 68 CE LYS C 255 31.101 4.528 21.516 1.00 55.80 ATOM 69 NZ LYS C 255 31.794 3.613 22.467 1.00 63.79 ATOM 70 N TYR C 256 27.185 1.029 17.987 1.00 28.92 ATOM 71 CA TYR C 256 26.112 0.349 17.280 1.00 26.33 ATOM 72 C TYR C 256 24.903 0.251 18.194 1.00 31.72 ATOM 73 O TYR C 256 25.046 0.023 19.398 1.00 32.68 ATOM 74 CB TYR C 256 26.523 -1.059 16.826 1.00 26.66 ATOM 75 CG TYR C 256 27.657 -1.085 15.828 1.00 27.02 ATOM 76 CD1 TYR C 256 27.410 -0.955 14.467 1.00 24.09 ATOM 77 CD2 TYR C 256 28.973 -1.247 16.247 1.00 25.99 ATOM 78 CE1 TYR C 256 28.441 -0.980 13.550 1.00 23.04 ATOM 79 CE2 TYR C 256 30.013 -1.272 15.336 1.00 26.09 ATOM 80 CZ TYR C 256 29.740 -1.139 13.989 1.00 27.90 ATOM 81 OH TYR C 256 30.768 -1.164 13.077 1.00 33.05 ATOM 82 N THR C 257 23.717 0.429 17.621 1.00 22.89 ATOM 83 CA THR C 257 22.503 0.147 18.366 1.00 29.23 ATOM 84 C THR C 257 22.394 -1.353 18.618 1.00 32.17 ATOM 85 O THR C 257 23.054 -2.168 17.966 1.00 33.87 ATOM 86 CB THR C 257 21.271 0.644 17.610 1.00 32.59 ATOM 87 OG1 THR C 257 21.006 -0.221 16.499 1.00 34.82 ATOM 88 CG2 THR C 257 21.493 2.060 17.100 1.00 29.13 ATOM 89 N LEU C 258 21.556 -1.715 19.593 1.00 36.94 ATOM 90 CA LEU C 258 21.345 -3.129 19.888 1.00 36.61 ATOM 91 C LEU C 258 20.811 -3.869 18.668 1.00 36.79 ATOM 92 O LEU C 258 21.247 -4.988 18.371 1.00 35.61 ATOM 93 CB LEU C 258 20.387 -3.285 21.068 1.00 37.90 ATOM 94 CG LEU C 258 20.099 -4.721 21.507 1.00 37.01 ATOM 95 CD1 LEU C 258 21.338 -5.348 22.126 1.00 30.44 ATOM 96 CD2 LEU C 258 18.928 -4.762 22.474 1.00 38.34 ATOM 97 N GLN C 259 19.878 -3.250 17.941 1.00 38.16 ATOM 98 CA GLN C 259 19.281 -3.901 16.779 1.00 42.59 ATOM 99 C GLN C 259 20.320 -4.189 15.702 1.00 43.26 ATOM 100 O GLN C 259 20.342 -5.286 15.129 1.00 46.18 ATOM 101 CB GLN C 259 18.156 -3.032 16.218 1.00 50.05 ATOM 102 CG GLN C 259 17.661 -3.466 14.850 1.00 64.17 ATOM 103 CD GLN C 259 16.561 -2.570 14.319 1.00 76.24 ATOM 104 OE1 GLN C 259 16.097 -1.663 15.010 1.00 80.97 ATOM 105 NE2 GLN C 259 16.136 -2.820 13.085 1.00 80.20 ATOM 106 N ASP C 260 21.187 -3.217 15.409 1.00 41.82 ATOM 107 CA ASP C 260 22.197 -3.421 14.375 1.00 44.36 ATOM 108 C ASP C 260 23.202 -4.490 14.786 1.00 39.49 ATOM 109 O ASP C 260 23.559 -5.354 13.978 1.00 41.59 ATOM 110 CB ASP C 260 22.909 -2.105 14.062 1.00 50.18 ATOM 111 CG ASP C 260 22.055 -1.164 13.235 1.00 63.55 ATOM 112 OD1 ASP C 260 21.077 -1.637 12.618 1.00 71.24 ATOM 113 OD2 ASP C 260 22.366 0.046 13.195 1.00 68.98 ATOM 114 N ALA C 261 23.662 -4.453 16.040 1.00 33.32 ATOM 115 CA ALA C 261 24.603 -5.463 16.514 1.00 31.10 ATOM 116 C ALA C 261 24.018 -6.866 16.416 1.00 35.22 ATOM 117 O ALA C 261 24.753 -7.828 16.164 1.00 40.08 ATOM 118 CB ALA C 261 25.020 -5.162 17.953 1.00 25.12 ATOM 119 N VAL C 262 22.704 -7.002 16.603 1.00 36.70 ATOM 120 CA VAL C 262 22.063 -8.309 16.491 1.00 29.59 ATOM 121 C VAL C 262 22.080 -8.791 15.045 1.00 49.21 ATOM 122 O VAL C 262 22.473 -9.929 14.758 1.00 47.85 ATOM 123 CB VAL C 262 20.631 -8.251 17.053 1.00 42.26 ATOM 124 CG1 VAL C 262 19.841 -9.473 16.620 1.00 35.59 ATOM 125 CG2 VAL C 262 20.666 -8.150 18.569 1.00 34.40 ATOM 126 N SER C 263 21.661 -7.933 14.112 1.00 46.15 ATOM 127 CA SER C 263 21.630 -8.306 12.703 1.00 48.90 ATOM 128 C SER C 263 23.019 -8.411 12.086 1.00 47.17 ATOM 129 O SER C 263 23.146 -8.954 10.984 1.00 48.75 ATOM 130 CB SER C 263 20.782 -7.306 11.913 1.00 56.82 ATOM 131 OG SER C 263 21.252 -5.981 12.091 1.00 63.58 ATOM 132 N LEU C 264 24.051 -7.908 12.758 1.00 41.18 ATOM 133 CA LEU C 264 25.430 -8.049 12.309 1.00 39.18 ATOM 134 C LEU C 264 26.126 -9.254 12.930 1.00 36.06 ATOM 135 O LEU C 264 27.331 -9.433 12.720 1.00 34.01 ATOM 136 CB LEU C 264 26.219 -6.776 12.625 1.00 36.07 ATOM 137 CG LEU C 264 25.869 -5.510 11.839 1.00 36.42 ATOM 138 CD1 LEU C 264 26.411 -4.279 12.550 1.00 30.58 ATOM 139 CD2 LEU C 264 26.415 -5.593 10.426 1.00 28.96 ATOM 140 N SER C 265 25.397 -10.073 13.692 1.00 33.38 ATOM 141 CA SER C 265 25.964 -11.216 14.412 1.00 36.63 ATOM 142 C SER C 265 27.083 -10.783 15.354 1.00 37.55 ATOM 143 O SER C 265 28.011 -11.549 15.627 1.00 42.50 ATOM 144 CB SER C 265 26.461 -12.296 13.446 1.00 37.33 ATOM 145 OG SER C 265 25.402 -12.796 12.649 1.00 43.59 ATOM 146 N TRP C 266 26.998 -9.546 15.846 1.00 33.93 ATOM 147 CA TRP C 266 27.959 -8.967 16.783 1.00 32.35 ATOM 148 C TRP C 266 29.369 -8.904 16.209 1.00 30.27 ATOM 149 O TRP C 266 30.348 -8.858 16.961 1.00 27.78 ATOM 150 CB TRP C 266 27.951 -9.724 18.115 1.00 31.16 ATOM 151 CG TRP C 266 26.602 -9.714 18.754 1.00 32.44 ATOM 152 CD1 TRP C 266 25.604 -10.628 18.579 1.00 32.13 ATOM 153 CD2 TRP C 266 26.090 -8.726 19.653 1.00 31.79 ATOM 154 NE1 TRP C 266 24.505 -10.275 19.324 1.00 33.01 ATOM 155 CE2 TRP C 266 24.777 -9.110 19.991 1.00 33.16 ATOM 156 CE3 TRP C 266 26.617 -7.557 20.211 1.00 28.50 ATOM 157 CZ2 TRP C 266 23.984 -8.366 20.862 1.00 30.68 ATOM 158 CZ3 TRP C 266 25.829 -6.820 21.073 1.00 26.30 ATOM 159 CH2 TRP C 266 24.527 -7.227 21.391 1.00 30.58 ATOM 160 N LYS C 267 29.486 -8.893 14.885 1.00 30.79 ATOM 161 CA LYS C 267 30.756 -8.697 14.201 1.00 31.63 ATOM 162 C LYS C 267 30.761 -7.317 13.561 1.00 30.87 ATOM 163 O LYS C 267 29.842 -6.971 12.809 1.00 35.41 ATOM 164 CB LYS C 267 30.989 -9.780 13.145 1.00 32.56 ATOM 165 CG LYS C 267 32.329 -9.670 12.441 1.00 39.00 ATOM 166 CD LYS C 267 32.646 -10.926 11.647 1.00 45.76 ATOM 167 CE LYS C 267 34.070 -10.893 11.115 1.00 52.17 ATOM 168 NZ LYS C 267 34.462 -12.184 10.482 1.00 64.69 ATOM 169 N CYS C 268 31.785 -6.535 13.866 1.00 30.56 ATOM 170 CA CYS C 268 31.866 -5.163 13.379 1.00 29.25 ATOM 171 C CYS C 268 32.065 -5.142 11.869 1.00 32.21 ATOM 172 O CYS C 268 33.039 -5.722 11.374 1.00 29.69 ATOM 173 CB CYS C 268 33.007 -4.428 14.073 1.00 26.32 ATOM 174 SG CYS C 268 33.308 -2.766 13.428 1.00 29.60 ATOM 175 N PRO C 269 31.183 -4.495 11.103 1.00 35.67 ATOM 176 CA PRO C 269 31.384 -4.440 9.646 1.00 35.85 ATOM 177 C PRO C 269 32.513 -3.518 9.216 1.00 35.74 ATOM 178 O PRO C 269 32.964 -3.622 8.068 1.00 37.52 ATOM 179 CB PRO C 269 30.028 -3.943 9.125 1.00 25.76 ATOM 180 CG PRO C 269 29.450 -3.179 10.269 1.00 31.46 ATOM 181 CD PRO C 269 29.907 -3.887 11.513 1.00 32.22 ATOM 182 N LYS C 270 32.990 -2.627 10.088 1.00 33.72 ATOM 183 CA LYS C 270 34.061 -1.714 9.699 1.00 35.19 ATOM 184 C LYS C 270 35.424 -2.395 9.743 1.00 31.10 ATOM 185 O LYS C 270 36.202 -2.304 8.787 1.00 24.74 ATOM 186 CB LYS C 270 34.062 -0.475 10.597 1.00 30.07 ATOM 187 CG LYS C 270 35.255 0.442 10.353 1.00 33.04 ATOM 188 CD LYS C 270 35.351 1.549 11.392 1.00 38.34 ATOM 189 CE LYS C 270 34.307 2.627 11.161 1.00 45.67 ATOM 190 NZ LYS C 270 34.400 3.706 12.183 1.00 50.68 ATOM 191 N CYS C 271 35.735 -3.080 10.845 1.00 28.82 ATOM 192 CA CYS C 271 37.055 -3.660 11.037 1.00 31.61 ATOM 193 C CYS C 271 37.050 -5.165 11.264 1.00 33.63 ATOM 194 O CYS C 271 38.126 -5.774 11.244 1.00 33.95 ATOM 195 CB CYS C 271 37.766 -2.988 12.222 1.00 31.49 ATOM 196 SG CYS C 271 37.179 -3.535 13.841 1.00 31.88 ATOM 197 N GLY C 272 35.890 -5.781 11.477 1.00 29.51 ATOM 198 CA GLY C 272 35.815 -7.203 11.734 1.00 29.31 ATOM 199 C GLY C 272 35.940 -7.601 13.188 1.00 29.63 ATOM 200 O GLY C 272 35.975 -8.803 13.482 1.00 34.03 ATOM 201 N GLY C 273 36.003 -6.638 14.106 1.00 24.02 ATOM 202 CA GLY C 273 36.172 -6.933 15.512 1.00 26.32 ATOM 203 C GLY C 273 34.884 -7.363 16.190 1.00 28.78 ATOM 204 O GLY C 273 33.808 -7.418 15.593 1.00 24.50 ATOM 205 N ILE C 274 35.007 -7.665 17.478 1.00 30.89 ATOM 206 CA ILE C 274 33.900 -8.194 18.267 1.00 31.64 ATOM 207 C ILE C 274 33.120 -7.030 18.865 1.00 30.60 ATOM 208 O ILE C 274 33.672 -6.225 19.623 1.00 27.69 ATOM 209 CB ILE C 274 34.404 -9.141 19.367 1.00 35.37 ATOM 210 CG1 ILE C 274 35.197 -10.298 18.756 1.00 37.33 ATOM 211 CG2 ILE C 274 33.241 -9.667 20.193 1.00 36.33 ATOM 212 CD1 ILE C 274 35.673 -11.317 19.771 1.00 38.80 ATOM 213 N ILE C 275 31.839 -6.939 18.523 1.00 30.99 ATOM 214 CA ILE C 275 30.947 -5.972 19.152 1.00 26.13 ATOM 215 C ILE C 275 30.576 -6.482 20.537 1.00 32.42 ATOM 216 O ILE C 275 30.314 -7.677 20.726 1.00 35.01 ATOM 217 CB ILE C 275 29.697 -5.743 18.283 1.00 21.86 ATOM 218 CG1 ILE C 275 30.091 -5.383 16.850 1.00 19.65 ATOM 219 CG2 ILE C 275 28.831 -4.647 18.871 1.00 21.32 ATOM 220 CD1 ILE C 275 28.904 -5.113 15.950 1.00 20.05 ATOM 221 N LYS C 276 30.558 -5.584 21.519 1.00 31.92 ATOM 222 CA LYS C 276 30.237 -5.942 22.894 1.00 30.62 ATOM 223 C LYS C 276 29.035 -5.136 23.362 1.00 31.68 ATOM 224 O LYS C 276 29.016 -3.907 23.239 1.00 31.36 ATOM 225 CB LYS C 276 31.436 -5.717 23.820 1.00 29.98 ATOM 226 CG LYS C 276 32.595 -6.668 23.549 1.00 34.61 ATOM 227 CD LYS C 276 33.600 -6.680 24.688 1.00 44.76 ATOM 228 CE LYS C 276 34.751 -7.636 24.398 1.00 52.74 ATOM 229 NZ LYS C 276 34.294 -9.049 24.276 1.00 55.14 ATOM 230 N LYS C 277 28.038 -5.835 23.901 1.00 28.07 ATOM 231 CA LYS C 277 26.798 -5.191 24.307 1.00 29.38 ATOM 232 C LYS C 277 27.041 -4.231 25.464 1.00 29.41 ATOM 233 O LYS C 277 27.726 -4.564 26.437 1.00 32.66 ATOM 234 CB LYS C 277 25.763 -6.247 24.696 1.00 35.77 ATOM 235 CG LYS C 277 24.422 -5.680 25.136 1.00 38.89 ATOM 236 CD LYS C 277 23.321 -6.735 25.097 1.00 40.76 ATOM 237 CE LYS C 277 23.518 -7.809 26.152 1.00 43.10 ATOM 238 NZ LYS C 277 22.422 -8.818 26.116 1.00 45.51 ATOM 239 ZN ZN C 503 35.327 -2.379 14.638 1.00 31.46 TER