HEADER DNA BINDING PROTEIN 31-DEC-69 6A58 TITLE Structure of histone demethylase REF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 FRAGMENT: Ig gamma-1 chain C ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.57 ANGSTORMS DBREF 6A58 A 1223 1360 UNP Q9STM3 REF6_ARATH 1223 1360 SEQRES 1 A 28 GLU GLU CYS ALA ALA TYR GLN CYS ASN MET GLU GLY CYS SEQRES 2 A 28 THR MET SER PHE SER SER GLU LYS GLN LEU MET LEU HIS SEQRES 3 A 28 LYS ARG ATOM 1 N GLU A1238 -40.436 16.137 20.747 0.50 50.42 ATOM 2 CA GLU A1238 -41.135 16.363 19.436 1.00 50.12 ATOM 3 C GLU A1238 -40.535 17.552 18.668 1.00 49.03 ATOM 4 O GLU A1238 -39.545 18.139 19.112 1.00 48.26 ATOM 5 CB GLU A1238 -42.652 16.531 19.646 1.00 50.83 ATOM 6 CG GLU A1238 -43.094 17.786 20.392 1.00 51.76 ATOM 7 CD GLU A1238 -44.599 18.006 20.327 1.00 53.19 ATOM 8 OE1 GLU A1238 -45.159 18.012 19.209 1.00 53.40 ATOM 9 OE2 GLU A1238 -45.225 18.183 21.395 1.00 55.35 ATOM 10 N GLU A1239 -41.124 17.880 17.515 1.00 48.25 ATOM 11 CA GLU A1239 -40.713 19.040 16.702 1.00 46.90 ATOM 12 C GLU A1239 -40.630 20.329 17.511 1.00 45.26 ATOM 13 O GLU A1239 -39.624 21.037 17.449 1.00 44.44 ATOM 14 CB GLU A1239 -41.695 19.270 15.549 1.00 47.84 ATOM 15 CG GLU A1239 -41.593 18.266 14.416 1.00 48.24 ATOM 16 CD GLU A1239 -42.501 18.603 13.247 1.00 48.12 ATOM 17 OE1 GLU A1239 -43.401 19.465 13.395 1.00 47.81 ATOM 18 OE2 GLU A1239 -42.313 18.000 12.172 1.00 48.47 ATOM 19 N CYS A1240 -41.708 20.618 18.243 1.00 43.69 ATOM 20 CA CYS A1240 -41.818 21.796 19.114 1.00 43.26 ATOM 21 C CYS A1240 -40.636 21.942 20.068 1.00 41.74 ATOM 22 O CYS A1240 -40.033 23.012 20.160 1.00 42.57 ATOM 23 CB CYS A1240 -43.114 21.733 19.930 1.00 43.48 ATOM 24 N ALA A1241 -40.320 20.854 20.764 1.00 40.78 ATOM 25 CA ALA A1241 -39.236 20.828 21.750 1.00 39.57 ATOM 26 C ALA A1241 -37.838 20.775 21.124 1.00 38.20 ATOM 27 O ALA A1241 -36.880 21.271 21.720 1.00 39.20 ATOM 28 CB ALA A1241 -39.423 19.650 22.697 1.00 39.98 ATOM 29 N ALA A1242 -37.722 20.166 19.944 1.00 36.14 ATOM 30 CA ALA A1242 -36.430 20.022 19.265 1.00 34.10 ATOM 31 C ALA A1242 -35.913 21.349 18.708 1.00 32.86 ATOM 32 O ALA A1242 -36.687 22.270 18.426 1.00 33.22 ATOM 33 CB ALA A1242 -36.525 18.991 18.151 1.00 34.19 ATOM 34 N TYR A1243 -34.593 21.426 18.559 1.00 31.39 ATOM 35 CA TYR A1243 -33.911 22.591 18.006 1.00 30.40 ATOM 36 C TYR A1243 -33.307 22.231 16.650 1.00 29.31 ATOM 37 O TYR A1243 -32.333 21.481 16.577 1.00 27.91 ATOM 38 CB TYR A1243 -32.821 23.062 18.969 1.00 31.63 ATOM 39 CG TYR A1243 -33.371 23.702 20.225 1.00 33.09 ATOM 40 CD1 TYR A1243 -33.793 22.923 21.306 1.00 34.31 ATOM 41 CD2 TYR A1243 -33.474 25.087 20.332 1.00 34.98 ATOM 42 CE1 TYR A1243 -34.302 23.512 22.459 1.00 35.34 ATOM 43 CE2 TYR A1243 -33.979 25.684 21.478 1.00 36.07 ATOM 44 CZ TYR A1243 -34.391 24.894 22.538 1.00 36.37 ATOM 45 OH TYR A1243 -34.889 25.491 23.675 1.00 39.38 ATOM 46 N GLN A1244 -33.884 22.781 15.584 1.00 28.42 ATOM 47 CA GLN A1244 -33.495 22.434 14.214 1.00 28.43 ATOM 48 C GLN A1244 -32.311 23.289 13.744 1.00 28.22 ATOM 49 O GLN A1244 -32.204 24.467 14.105 1.00 28.79 ATOM 50 CB GLN A1244 -34.689 22.594 13.258 1.00 28.95 ATOM 51 CG GLN A1244 -35.832 21.596 13.478 1.00 29.86 ATOM 52 CD GLN A1244 -36.763 21.934 14.640 1.00 30.64 ATOM 53 OE1 GLN A1244 -36.783 23.062 15.142 1.00 31.67 ATOM 54 NE2 GLN A1244 -37.551 20.950 15.069 1.00 31.94 ATOM 55 N CYS A1245 -31.426 22.688 12.949 1.00 27.07 ATOM 56 CA CYS A1245 -30.296 23.404 12.348 1.00 27.73 ATOM 57 C CYS A1245 -30.755 24.194 11.130 1.00 28.48 ATOM 58 O CYS A1245 -31.462 23.658 10.276 1.00 28.27 ATOM 59 CB CYS A1245 -29.188 22.439 11.934 1.00 27.62 ATOM 60 SG CYS A1245 -27.734 23.285 11.265 1.00 28.18 ATOM 61 N ASN A1246 -30.338 25.460 11.049 1.00 29.34 ATOM 62 CA ASN A1246 -30.732 26.345 9.941 1.00 30.43 ATOM 63 C ASN A1246 -29.705 26.439 8.805 1.00 31.71 ATOM 64 O ASN A1246 -29.877 27.250 7.891 1.00 32.87 ATOM 65 CB ASN A1246 -31.099 27.747 10.462 1.00 30.29 ATOM 66 CG ASN A1246 -29.930 28.485 11.094 1.00 31.26 ATOM 67 OD1 ASN A1246 -28.834 27.945 11.260 1.00 31.71 ATOM 68 ND2 ASN A1246 -30.176 29.735 11.473 1.00 32.13 ATOM 69 N MET A1247 -28.649 25.626 8.855 1.00 32.35 ATOM 70 CA MET A1247 -27.651 25.591 7.784 1.00 33.97 ATOM 71 C MET A1247 -28.248 24.943 6.540 1.00 34.81 ATOM 72 O MET A1247 -29.013 23.983 6.643 1.00 32.23 ATOM 73 CB MET A1247 -26.398 24.828 8.224 1.00 35.41 ATOM 74 CG MET A1247 -25.631 25.498 9.353 1.00 36.39 ATOM 75 SD MET A1247 -24.834 27.032 8.837 1.00 39.67 ATOM 76 CE MET A1247 -23.482 26.390 7.856 1.00 39.37 ATOM 77 N GLU A1248 -27.899 25.479 5.372 1.00 36.58 ATOM 78 CA GLU A1248 -28.479 25.026 4.105 1.00 37.73 ATOM 79 C GLU A1248 -28.186 23.543 3.876 1.00 35.99 ATOM 80 O GLU A1248 -27.038 23.106 3.977 1.00 36.35 ATOM 81 CB GLU A1248 -27.945 25.857 2.927 1.00 40.59 ATOM 82 CG GLU A1248 -28.737 25.711 1.631 1.00 43.22 ATOM 83 CD GLU A1248 -30.140 26.295 1.712 1.00 45.84 ATOM 84 OE1 GLU A1248 -31.082 25.652 1.202 1.00 48.28 ATOM 85 OE2 GLU A1248 -30.308 27.395 2.282 1.00 49.36 ATOM 86 N GLY A1249 -29.240 22.774 3.612 1.00 34.30 ATOM 87 CA GLY A1249 -29.126 21.342 3.359 1.00 33.22 ATOM 88 C GLY A1249 -29.118 20.447 4.591 1.00 31.96 ATOM 89 O GLY A1249 -29.226 19.229 4.452 1.00 33.45 ATOM 90 N CYS A1250 -29.000 21.024 5.789 1.00 30.45 ATOM 91 CA CYS A1250 -28.921 20.219 7.014 1.00 28.54 ATOM 92 C CYS A1250 -30.314 19.813 7.481 1.00 27.80 ATOM 93 O CYS A1250 -31.237 20.628 7.469 1.00 28.09 ATOM 94 CB CYS A1250 -28.212 20.980 8.130 1.00 28.52 ATOM 95 SG CYS A1250 -27.752 19.905 9.518 1.00 27.43 ATOM 96 N THR A1251 -30.458 18.555 7.897 1.00 25.94 ATOM 97 CA THR A1251 -31.734 18.032 8.379 1.00 25.99 ATOM 98 C THR A1251 -31.642 17.571 9.838 1.00 25.04 ATOM 99 O THR A1251 -32.529 16.869 10.320 1.00 25.77 ATOM 100 CB THR A1251 -32.225 16.865 7.494 1.00 26.82 ATOM 101 OG1 THR A1251 -31.296 15.780 7.569 1.00 27.23 ATOM 102 CG2 THR A1251 -32.371 17.309 6.043 1.00 27.53 ATOM 103 N MET A1252 -30.593 17.993 10.545 1.00 24.70 ATOM 104 CA MET A1252 -30.371 17.562 11.924 1.00 25.38 ATOM 105 C MET A1252 -31.125 18.424 12.928 1.00 25.38 ATOM 106 O MET A1252 -31.400 19.599 12.675 1.00 25.59 ATOM 107 CB MET A1252 -28.885 17.560 12.257 1.00 25.99 ATOM 108 CG MET A1252 -28.099 16.534 11.461 1.00 27.09 ATOM 109 SD MET A1252 -26.384 16.484 11.993 1.00 28.58 ATOM 110 CE MET A1252 -25.700 15.337 10.800 1.00 29.59 ATOM 111 N SER A1253 -31.463 17.819 14.064 1.00 24.73 ATOM 112 CA SER A1253 -32.093 18.529 15.179 1.00 25.72 ATOM 113 C SER A1253 -31.562 18.000 16.507 1.00 24.82 ATOM 114 O SER A1253 -30.968 16.917 16.558 1.00 24.81 ATOM 115 CB SER A1253 -33.611 18.397 15.124 1.00 27.81 ATOM 116 OG SER A1253 -34.008 17.067 15.366 1.00 29.47 ATOM 117 N PHE A1254 -31.780 18.784 17.564 1.00 25.89 ATOM 118 CA PHE A1254 -31.126 18.587 18.866 1.00 26.14 ATOM 119 C PHE A1254 -32.089 18.762 20.030 1.00 27.72 ATOM 120 O PHE A1254 -33.083 19.476 19.919 1.00 27.94 ATOM 121 CB PHE A1254 -29.931 19.548 18.976 1.00 25.74 ATOM 122 CG PHE A1254 -28.954 19.353 17.866 1.00 24.56 ATOM 123 CD1 PHE A1254 -27.952 18.403 17.979 1.00 25.35 ATOM 124 CD2 PHE A1254 -29.116 20.018 16.654 1.00 25.25 ATOM 125 CE1 PHE A1254 -27.090 18.159 16.927 1.00 25.27 ATOM 126 CE2 PHE A1254 -28.262 19.770 15.597 1.00 25.10 ATOM 127 CZ PHE A1254 -27.249 18.838 15.736 1.00 24.91 ATOM 128 N SER A1255 -31.772 18.102 21.144 1.00 30.72 ATOM 129 CA SER A1255 -32.606 18.127 22.347 1.00 32.55 ATOM 130 C SER A1255 -32.561 19.463 23.092 1.00 33.61 ATOM 131 O SER A1255 -33.476 19.771 23.861 1.00 36.22 ATOM 132 CB SER A1255 -32.190 17.000 23.299 1.00 33.48 ATOM 133 OG SER A1255 -32.274 15.735 22.661 1.00 35.81 ATOM 134 N SER A1256 -31.507 20.247 22.871 1.00 33.35 ATOM 135 CA SER A1256 -31.341 21.535 23.541 1.00 33.67 ATOM 136 C SER A1256 -30.666 22.555 22.639 1.00 33.22 ATOM 137 O SER A1256 -29.990 22.191 21.673 1.00 32.77 ATOM 138 CB SER A1256 -30.499 21.345 24.799 1.00 33.76 ATOM 139 OG SER A1256 -29.193 20.900 24.466 1.00 34.16 ATOM 140 N GLU A1257 -30.837 23.832 22.972 1.00 32.94 ATOM 141 CA GLU A1257 -30.141 24.911 22.270 1.00 32.77 ATOM 142 C GLU A1257 -28.627 24.762 22.405 1.00 31.35 ATOM 143 O GLU A1257 -27.890 25.059 21.467 1.00 30.16 ATOM 144 CB GLU A1257 -30.571 26.290 22.783 1.00 34.52 ATOM 145 CG GLU A1257 -30.063 27.433 21.917 1.00 35.80 ATOM 146 CD GLU A1257 -30.592 28.794 22.329 1.00 37.12 ATOM 147 OE1 GLU A1257 -30.835 29.018 23.535 1.00 40.53 ATOM 148 OE2 GLU A1257 -30.749 29.648 21.436 1.00 37.67 ATOM 149 N LYS A1258 -28.183 24.311 23.578 1.00 31.12 ATOM 150 CA LYS A1258 -26.774 24.015 23.842 1.00 30.44 ATOM 151 C LYS A1258 -26.158 23.131 22.764 1.00 28.73 ATOM 152 O LYS A1258 -25.126 23.471 22.188 1.00 28.25 ATOM 153 CB LYS A1258 -26.641 23.331 25.203 1.00 32.09 ATOM 154 CG LYS A1258 -25.224 22.958 25.591 1.00 33.77 ATOM 155 CD LYS A1258 -25.194 22.369 26.989 1.00 35.13 ATOM 156 CE LYS A1258 -23.834 22.516 27.623 1.00 36.81 ATOM 157 NZ LYS A1258 -23.568 23.906 28.088 1.00 37.06 ATOM 158 N GLN A1259 -26.805 22.005 22.487 1.00 27.90 ATOM 159 CA GLN A1259 -26.279 21.060 21.501 1.00 27.54 ATOM 160 C GLN A1259 -26.400 21.582 20.068 1.00 26.04 ATOM 161 O GLN A1259 -25.582 21.236 19.217 1.00 25.30 ATOM 162 CB GLN A1259 -26.933 19.683 21.663 1.00 28.73 ATOM 163 CG GLN A1259 -26.625 19.021 23.005 1.00 29.58 ATOM 164 CD GLN A1259 -25.140 18.794 23.254 1.00 29.88 ATOM 165 OE1 GLN A1259 -24.354 18.614 22.319 1.00 31.26 ATOM 166 NE2 GLN A1259 -24.746 18.807 24.524 1.00 32.41 ATOM 167 N LEU A1260 -27.393 22.428 19.808 1.00 25.54 ATOM 168 CA LEU A1260 -27.479 23.126 18.525 1.00 25.69 ATOM 169 C LEU A1260 -26.311 24.108 18.351 1.00 25.94 ATOM 170 O LEU A1260 -25.738 24.199 17.271 1.00 25.54 ATOM 171 CB LEU A1260 -28.813 23.862 18.380 1.00 26.59 ATOM 172 CG LEU A1260 -28.965 24.712 17.112 1.00 26.77 ATOM 173 CD1 LEU A1260 -28.875 23.840 15.870 1.00 26.88 ATOM 174 CD2 LEU A1260 -30.256 25.514 17.128 1.00 27.94 ATOM 175 N MET A1261 -25.979 24.850 19.406 1.00 26.01 ATOM 176 CA MET A1261 -24.843 25.782 19.355 1.00 26.58 ATOM 177 C MET A1261 -23.517 25.058 19.111 1.00 25.38 ATOM 178 O MET A1261 -22.694 25.510 18.306 1.00 25.16 ATOM 179 CB MET A1261 -24.766 26.614 20.638 1.00 27.82 ATOM 180 CG MET A1261 -25.883 27.635 20.771 1.00 29.00 ATOM 181 SD MET A1261 -25.729 28.662 22.245 0.80 31.90 ATOM 182 CE MET A1261 -26.409 27.636 23.536 1.00 32.00 ATOM 183 N LEU A1262 -23.328 23.925 19.784 1.00 24.96 ATOM 184 CA LEU A1262 -22.138 23.099 19.576 1.00 25.17 ATOM 185 C LEU A1262 -22.103 22.534 18.154 1.00 24.60 ATOM 186 O LEU A1262 -21.042 22.473 17.527 1.00 24.69 ATOM 187 CB LEU A1262 -22.060 21.973 20.614 1.00 25.91 ATOM 188 CG LEU A1262 -21.893 22.431 22.072 1.00 26.87 ATOM 189 CD1 LEU A1262 -22.050 21.260 23.028 1.00 27.74 ATOM 190 CD2 LEU A1262 -20.559 23.132 22.288 1.00 26.77 ATOM 191 N HIS A1263 -23.271 22.149 17.640 1.00 24.28 ATOM 192 CA HIS A1263 -23.406 21.708 16.256 1.00 25.04 ATOM 193 C HIS A1263 -23.004 22.792 15.245 1.00 25.89 ATOM 194 O HIS A1263 -22.332 22.493 14.260 1.00 26.14 ATOM 195 CB HIS A1263 -24.844 21.251 15.996 1.00 24.70 ATOM 196 CG HIS A1263 -25.109 20.870 14.576 1.00 24.50 ATOM 197 ND1 HIS A1263 -24.584 19.732 14.005 1.00 24.34 ATOM 198 CD2 HIS A1263 -25.858 21.464 13.617 1.00 24.89 ATOM 199 CE1 HIS A1263 -24.992 19.645 12.752 1.00 25.46 ATOM 200 NE2 HIS A1263 -25.759 20.687 12.489 1.00 24.85 ATOM 201 N LYS A1264 -23.397 24.039 15.498 1.00 27.26 ATOM 202 CA LYS A1264 -23.021 25.162 14.623 1.00 28.48 ATOM 203 C LYS A1264 -21.519 25.500 14.659 1.00 29.25 ATOM 204 O LYS A1264 -21.019 26.167 13.748 1.00 30.20 ATOM 205 CB LYS A1264 -23.875 26.395 14.919 1.00 29.87 ATOM 206 CG LYS A1264 -25.310 26.219 14.461 1.00 31.24 ATOM 207 CD LYS A1264 -26.184 27.383 14.872 1.00 33.21 ATOM 208 CE LYS A1264 -27.615 27.151 14.426 1.00 34.30 ATOM 209 NZ LYS A1264 -28.505 28.293 14.760 1.00 35.49 ATOM 210 N ARG A1265 -20.824 25.037 15.704 1.00 28.13 ATOM 211 CA ARG A1265 -19.357 25.098 15.786 0.70 28.29 ATOM 212 C ARG A1265 -18.690 23.852 15.186 1.00 28.16 ATOM 213 O ARG A1265 -17.491 23.615 15.379 1.00 27.87 ATOM 214 CB ARG A1265 -18.923 25.283 17.241 0.70 28.18 ATOM 215 CG ARG A1265 -19.234 26.667 17.789 0.70 28.52 ATOM 216 CD ARG A1265 -19.030 26.731 19.285 0.70 28.30 ATOM 217 NE ARG A1265 -17.693 26.298 19.691 0.70 28.08 ATOM 218 CZ ARG A1265 -17.303 26.117 20.952 0.70 27.50 ATOM 219 NH1 ARG A1265 -18.137 26.340 21.971 0.70 27.35 ATOM 220 NH2 ARG A1265 -16.061 25.703 21.198 0.70 27.61 ATOM 221 ZN ZN A1401 -26.550 21.398 10.702 0.90 32.62 TER