HEADER DNA BINDING PROTEIN 31-DEC-69 6A58 TITLE Structure of histone demethylase REF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 FRAGMENT: Ig gamma-1 chain C ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.57 ANGSTORMS DBREF 6A58 A 1223 1360 UNP Q9STM3 REF6_ARATH 1223 1360 SEQRES 1 A 30 LYS ARG ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN SEQRES 2 A 30 PHE PHE SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL SEQRES 3 A 30 HIS SER ASP ASP ATOM 1 N LYS A1264 -23.397 24.039 15.498 1.00 27.26 ATOM 2 CA LYS A1264 -23.021 25.162 14.623 1.00 28.48 ATOM 3 C LYS A1264 -21.519 25.500 14.659 1.00 29.25 ATOM 4 O LYS A1264 -21.019 26.167 13.748 1.00 30.20 ATOM 5 CB LYS A1264 -23.875 26.395 14.919 1.00 29.87 ATOM 6 CG LYS A1264 -25.310 26.219 14.461 1.00 31.24 ATOM 7 CD LYS A1264 -26.184 27.383 14.872 1.00 33.21 ATOM 8 CE LYS A1264 -27.615 27.151 14.426 1.00 34.30 ATOM 9 NZ LYS A1264 -28.505 28.293 14.760 1.00 35.49 ATOM 10 N ARG A1265 -20.824 25.037 15.704 1.00 28.13 ATOM 11 CA ARG A1265 -19.357 25.098 15.786 0.70 28.29 ATOM 12 C ARG A1265 -18.690 23.852 15.186 1.00 28.16 ATOM 13 O ARG A1265 -17.491 23.615 15.379 1.00 27.87 ATOM 14 CB ARG A1265 -18.923 25.283 17.241 0.70 28.18 ATOM 15 CG ARG A1265 -19.234 26.667 17.789 0.70 28.52 ATOM 16 CD ARG A1265 -19.030 26.731 19.285 0.70 28.30 ATOM 17 NE ARG A1265 -17.693 26.298 19.691 0.70 28.08 ATOM 18 CZ ARG A1265 -17.303 26.117 20.952 0.70 27.50 ATOM 19 NH1 ARG A1265 -18.137 26.340 21.971 0.70 27.35 ATOM 20 NH2 ARG A1265 -16.061 25.703 21.198 0.70 27.61 ATOM 21 N ASN A1266 -19.467 23.055 14.445 1.00 27.53 ATOM 22 CA ASN A1266 -18.986 21.869 13.737 1.00 27.68 ATOM 23 C ASN A1266 -18.331 20.820 14.633 1.00 26.77 ATOM 24 O ASN A1266 -17.360 20.167 14.240 1.00 27.70 ATOM 25 CB ASN A1266 -18.074 22.285 12.571 1.00 28.68 ATOM 26 CG ASN A1266 -18.776 23.206 11.591 1.00 29.36 ATOM 27 OD1 ASN A1266 -18.247 24.248 11.212 1.00 32.69 ATOM 28 ND2 ASN A1266 -19.984 22.835 11.196 1.00 29.08 ATOM 29 N ILE A1267 -18.895 20.651 15.828 1.00 25.73 ATOM 30 CA ILE A1267 -18.481 19.614 16.764 1.00 25.72 ATOM 31 C ILE A1267 -19.379 18.405 16.519 1.00 25.68 ATOM 32 O ILE A1267 -20.601 18.546 16.438 1.00 25.45 ATOM 33 CB ILE A1267 -18.618 20.073 18.231 1.00 25.91 ATOM 34 CG1 ILE A1267 -17.740 21.303 18.494 1.00 26.39 ATOM 35 CG2 ILE A1267 -18.242 18.942 19.187 1.00 26.06 ATOM 36 CD1 ILE A1267 -18.141 22.105 19.711 1.00 26.63 ATOM 37 N CYS A1268 -18.771 17.228 16.385 1.00 25.47 ATOM 38 CA CYS A1268 -19.518 15.985 16.155 1.00 26.48 ATOM 39 C CYS A1268 -20.675 15.815 17.154 1.00 26.64 ATOM 40 O CYS A1268 -20.490 16.046 18.347 1.00 27.31 ATOM 41 CB CYS A1268 -18.584 14.785 16.263 1.00 27.31 ATOM 42 SG CYS A1268 -19.400 13.212 15.919 1.00 28.54 ATOM 43 N PRO A1269 -21.868 15.403 16.672 1.00 26.37 ATOM 44 CA PRO A1269 -23.023 15.245 17.569 1.00 26.45 ATOM 45 C PRO A1269 -23.006 13.999 18.465 1.00 26.98 ATOM 46 O PRO A1269 -23.881 13.875 19.326 1.00 27.72 ATOM 47 CB PRO A1269 -24.206 15.152 16.596 1.00 26.46 ATOM 48 CG PRO A1269 -23.615 14.574 15.361 1.00 26.45 ATOM 49 CD PRO A1269 -22.243 15.172 15.264 1.00 26.59 ATOM 50 N ILE A1270 -22.049 13.089 18.263 1.00 27.73 ATOM 51 CA ILE A1270 -22.051 11.785 18.934 1.00 28.45 ATOM 52 C ILE A1270 -21.298 11.834 20.264 1.00 29.34 ATOM 53 O ILE A1270 -20.177 12.347 20.337 1.00 29.28 ATOM 54 CB ILE A1270 -21.439 10.692 18.017 1.00 28.62 ATOM 55 CG1 ILE A1270 -22.216 10.595 16.690 1.00 29.28 ATOM 56 CG2 ILE A1270 -21.377 9.341 18.727 1.00 29.04 ATOM 57 CD1 ILE A1270 -23.694 10.285 16.819 1.00 29.80 ATOM 58 N LYS A1271 -21.917 11.273 21.303 1.00 30.37 ATOM 59 CA LYS A1271 -21.312 11.196 22.638 1.00 31.38 ATOM 60 C LYS A1271 -19.951 10.493 22.591 1.00 32.54 ATOM 61 O LYS A1271 -19.814 9.431 21.977 1.00 32.82 ATOM 62 CB LYS A1271 -22.239 10.452 23.608 1.00 31.46 ATOM 63 CG LYS A1271 -23.521 11.190 23.955 1.00 31.66 ATOM 64 CD LYS A1271 -24.526 10.275 24.640 1.00 31.76 ATOM 65 CE LYS A1271 -25.821 11.005 24.953 1.00 32.64 ATOM 66 NZ LYS A1271 -26.861 10.125 25.559 1.00 33.20 ATOM 67 N GLY A1272 -18.949 11.113 23.215 1.00 34.07 ATOM 68 CA GLY A1272 -17.602 10.543 23.314 1.00 34.33 ATOM 69 C GLY A1272 -16.631 10.799 22.170 1.00 35.50 ATOM 70 O GLY A1272 -15.446 10.478 22.299 1.00 36.97 ATOM 71 N CYS A1273 -17.101 11.369 21.057 1.00 34.31 ATOM 72 CA CYS A1273 -16.246 11.572 19.883 1.00 33.89 ATOM 73 C CYS A1273 -15.352 12.803 20.056 1.00 34.96 ATOM 74 O CYS A1273 -14.127 12.676 20.129 1.00 36.29 ATOM 75 CB CYS A1273 -17.081 11.681 18.601 1.00 33.14 ATOM 76 SG CYS A1273 -16.087 11.962 17.123 1.00 33.29 ATOM 77 N GLY A1274 -15.968 13.982 20.113 1.00 34.48 ATOM 78 CA GLY A1274 -15.246 15.238 20.332 1.00 33.89 ATOM 79 C GLY A1274 -14.542 15.861 19.134 1.00 33.52 ATOM 80 O GLY A1274 -13.941 16.927 19.272 1.00 33.74 ATOM 81 N LYS A1275 -14.612 15.230 17.961 1.00 31.86 ATOM 82 CA LYS A1275 -13.935 15.758 16.775 1.00 31.77 ATOM 83 C LYS A1275 -14.623 17.037 16.284 1.00 30.60 ATOM 84 O LYS A1275 -15.853 17.112 16.252 1.00 29.74 ATOM 85 CB LYS A1275 -13.878 14.707 15.664 1.00 33.06 ATOM 86 CG LYS A1275 -12.999 13.512 15.998 1.00 34.35 ATOM 87 CD LYS A1275 -12.997 12.506 14.860 1.00 35.84 ATOM 88 CE LYS A1275 -11.913 11.452 15.023 1.00 37.54 ATOM 89 NZ LYS A1275 -12.134 10.580 16.207 1.00 39.72 ATOM 90 N ASN A1276 -13.814 18.043 15.945 1.00 29.54 ATOM 91 CA ASN A1276 -14.290 19.315 15.391 1.00 29.39 ATOM 92 C ASN A1276 -13.876 19.397 13.927 1.00 29.88 ATOM 93 O ASN A1276 -12.838 18.847 13.544 1.00 29.24 ATOM 94 CB ASN A1276 -13.659 20.508 16.118 1.00 28.95 ATOM 95 CG ASN A1276 -14.180 20.707 17.534 1.00 29.11 ATOM 96 OD1 ASN A1276 -14.423 21.846 17.944 1.00 28.79 ATOM 97 ND2 ASN A1276 -14.308 19.625 18.299 1.00 27.94 ATOM 98 N PHE A1277 -14.659 20.118 13.125 1.00 29.87 ATOM 99 CA PHE A1277 -14.429 20.208 11.675 1.00 30.48 ATOM 100 C PHE A1277 -14.436 21.643 11.160 1.00 30.45 ATOM 101 O PHE A1277 -15.003 22.536 11.783 1.00 29.67 ATOM 102 CB PHE A1277 -15.442 19.326 10.939 1.00 30.96 ATOM 103 CG PHE A1277 -15.271 17.875 11.253 1.00 30.98 ATOM 104 CD1 PHE A1277 -14.386 17.098 10.517 1.00 31.65 ATOM 105 CD2 PHE A1277 -15.923 17.300 12.345 1.00 31.37 ATOM 106 CE1 PHE A1277 -14.185 15.766 10.830 1.00 31.72 ATOM 107 CE2 PHE A1277 -15.723 15.969 12.666 1.00 31.39 ATOM 108 CZ PHE A1277 -14.851 15.201 11.907 1.00 31.82 ATOM 109 N PHE A1278 -13.775 21.854 10.023 1.00 31.39 ATOM 110 CA PHE A1278 -13.573 23.194 9.465 1.00 33.02 ATOM 111 C PHE A1278 -14.835 23.760 8.816 1.00 32.82 ATOM 112 O PHE A1278 -15.016 24.978 8.763 1.00 34.05 ATOM 113 CB PHE A1278 -12.420 23.175 8.450 1.00 34.18 ATOM 114 CG PHE A1278 -12.053 24.535 7.920 1.00 36.01 ATOM 115 CD1 PHE A1278 -11.367 25.444 8.719 1.00 36.64 ATOM 116 CD2 PHE A1278 -12.401 24.913 6.625 1.00 37.11 ATOM 117 CE1 PHE A1278 -11.032 26.703 8.237 1.00 37.93 ATOM 118 CE2 PHE A1278 -12.067 26.168 6.137 1.00 37.72 ATOM 119 CZ PHE A1278 -11.383 27.065 6.943 1.00 37.95 ATOM 120 N SER A1279 -15.694 22.876 8.314 1.00 34.02 ATOM 121 CA SER A1279 -16.950 23.284 7.704 1.00 34.37 ATOM 122 C SER A1279 -18.071 22.339 8.094 1.00 34.11 ATOM 123 O SER A1279 -17.847 21.245 8.613 1.00 32.37 ATOM 124 CB SER A1279 -16.821 23.323 6.177 1.00 34.85 ATOM 125 OG SER A1279 -16.944 22.026 5.617 1.00 36.00 ATOM 126 N HIS A1280 -19.280 22.781 7.794 1.00 35.08 ATOM 127 CA HIS A1280 -20.477 22.013 8.068 1.00 36.07 ATOM 128 C HIS A1280 -20.594 20.766 7.178 1.00 37.06 ATOM 129 O HIS A1280 -21.125 19.748 7.615 1.00 35.62 ATOM 130 CB HIS A1280 -21.695 22.915 7.919 1.00 36.94 ATOM 131 CG HIS A1280 -22.911 22.376 8.584 1.00 38.95 ATOM 132 ND1 HIS A1280 -23.762 21.503 7.950 1.00 41.87 ATOM 133 CD2 HIS A1280 -23.408 22.559 9.829 1.00 41.60 ATOM 134 CE1 HIS A1280 -24.741 21.180 8.770 1.00 41.75 ATOM 135 NE2 HIS A1280 -24.557 21.812 9.916 1.00 40.59 ATOM 136 N LYS A1281 -20.083 20.840 5.947 1.00 38.34 ATOM 137 CA LYS A1281 -20.058 19.680 5.047 1.00 39.91 ATOM 138 C LYS A1281 -19.184 18.543 5.594 1.00 39.67 ATOM 139 O LYS A1281 -19.585 17.378 5.549 1.00 40.28 ATOM 140 CB LYS A1281 -19.580 20.083 3.645 1.00 41.68 ATOM 141 CG LYS A1281 -19.885 19.047 2.575 1.00 43.31 ATOM 142 CD LYS A1281 -19.435 19.500 1.193 1.00 45.22 ATOM 143 CE LYS A1281 -17.929 19.385 1.020 1.00 46.44 ATOM 144 NZ LYS A1281 -17.516 19.591 -0.397 1.00 47.55 ATOM 145 N TYR A1282 -17.999 18.888 6.104 1.00 39.25 ATOM 146 CA TYR A1282 -17.104 17.910 6.749 1.00 39.70 ATOM 147 C TYR A1282 -17.746 17.235 7.965 1.00 37.59 ATOM 148 O TYR A1282 -17.578 16.030 8.171 1.00 38.45 ATOM 149 CB TYR A1282 -15.785 18.567 7.183 1.00 41.29 ATOM 150 CG TYR A1282 -14.811 18.859 6.056 1.00 43.82 ATOM 151 CD1 TYR A1282 -14.299 17.830 5.267 1.00 45.08 ATOM 152 CD2 TYR A1282 -14.368 20.160 5.806 1.00 44.64 ATOM 153 CE1 TYR A1282 -13.395 18.089 4.245 1.00 46.38 ATOM 154 CE2 TYR A1282 -13.463 20.430 4.787 1.00 46.13 ATOM 155 CZ TYR A1282 -12.980 19.392 4.010 1.00 46.41 ATOM 156 OH TYR A1282 -12.084 19.655 3.001 1.00 49.38 ATOM 157 N LEU A1283 -18.463 18.021 8.767 1.00 35.85 ATOM 158 CA LEU A1283 -19.168 17.516 9.950 1.00 35.71 ATOM 159 C LEU A1283 -20.219 16.460 9.593 1.00 36.05 ATOM 160 O LEU A1283 -20.255 15.386 10.196 1.00 35.79 ATOM 161 CB LEU A1283 -19.844 18.674 10.690 1.00 35.23 ATOM 162 CG LEU A1283 -20.722 18.333 11.900 1.00 35.34 ATOM 163 CD1 LEU A1283 -19.862 17.871 13.064 1.00 35.47 ATOM 164 CD2 LEU A1283 -21.598 19.522 12.270 1.00 36.11 ATOM 165 N VAL A1284 -21.072 16.788 8.625 1.00 36.99 ATOM 166 CA VAL A1284 -22.191 15.919 8.226 1.00 38.49 ATOM 167 C VAL A1284 -21.687 14.593 7.642 1.00 40.72 ATOM 168 O VAL A1284 -22.223 13.527 7.962 1.00 40.09 ATOM 169 CB VAL A1284 -23.143 16.639 7.232 1.00 39.19 ATOM 170 CG1 VAL A1284 -24.173 15.682 6.630 1.00 39.40 ATOM 171 CG2 VAL A1284 -23.857 17.794 7.925 1.00 38.97 ATOM 172 N GLN A1285 -20.660 14.665 6.800 1.00 42.57 ATOM 173 CA GLN A1285 -20.024 13.465 6.242 1.00 44.06 ATOM 174 C GLN A1285 -19.433 12.565 7.330 1.00 43.02 ATOM 175 O GLN A1285 -19.592 11.343 7.278 1.00 43.63 ATOM 176 CB GLN A1285 -18.937 13.848 5.234 1.00 45.93 ATOM 177 CG GLN A1285 -19.482 14.437 3.941 1.00 48.36 ATOM 178 CD GLN A1285 -18.400 14.999 3.034 1.00 50.28 ATOM 179 OE1 GLN A1285 -17.204 14.805 3.266 1.00 52.52 ATOM 180 NE2 GLN A1285 -18.821 15.702 1.986 1.00 52.02 ATOM 181 N HIS A1286 -18.768 13.174 8.312 1.00 41.18 ATOM 182 CA HIS A1286 -18.173 12.432 9.427 1.00 40.84 ATOM 183 C HIS A1286 -19.194 11.674 10.283 1.00 41.86 ATOM 184 O HIS A1286 -18.971 10.509 10.622 1.00 42.26 ATOM 185 CB HIS A1286 -17.360 13.360 10.334 1.00 39.39 ATOM 186 CG HIS A1286 -16.894 12.697 11.590 1.00 38.48 ATOM 187 ND1 HIS A1286 -15.886 11.759 11.604 1.00 37.56 ATOM 188 CD2 HIS A1286 -17.315 12.818 12.871 1.00 37.13 ATOM 189 CE1 HIS A1286 -15.700 11.335 12.840 1.00 37.78 ATOM 190 NE2 HIS A1286 -16.554 11.963 13.629 1.00 37.78 ATOM 191 N GLN A1287 -20.290 12.344 10.645 1.00 42.66 ATOM 192 CA GLN A1287 -21.349 11.748 11.482 1.00 44.37 ATOM 193 C GLN A1287 -21.860 10.408 10.928 1.00 44.89 ATOM 194 O GLN A1287 -22.158 9.495 11.699 1.00 45.17 ATOM 195 CB GLN A1287 -22.508 12.749 11.676 1.00 45.13 ATOM 196 CG GLN A1287 -23.759 12.200 12.367 1.00 46.12 ATOM 197 CD GLN A1287 -24.786 11.621 11.403 1.00 46.49 ATOM 198 OE1 GLN A1287 -25.084 12.212 10.363 1.00 48.69 ATOM 199 NE2 GLN A1287 -25.335 10.459 11.748 1.00 47.05 ATOM 200 N ARG A1288 -21.945 10.303 9.601 1.00 45.87 ATOM 201 CA ARG A1288 -22.349 9.062 8.923 1.00 46.55 ATOM 202 C ARG A1288 -21.461 7.851 9.243 1.00 46.86 ATOM 203 O ARG A1288 -21.948 6.719 9.255 1.00 47.60 ATOM 204 CB ARG A1288 -22.381 9.275 7.408 1.00 46.74 ATOM 205 N VAL A1289 -20.173 8.090 9.499 1.00 46.27 ATOM 206 CA VAL A1289 -19.231 7.024 9.872 1.00 45.10 ATOM 207 C VAL A1289 -19.559 6.344 11.209 1.00 44.33 ATOM 208 O VAL A1289 -19.228 5.171 11.403 1.00 45.65 ATOM 209 CB VAL A1289 -17.780 7.548 9.930 1.00 45.60 ATOM 210 N HIS A1290 -20.193 7.073 12.127 1.00 41.70 ATOM 211 CA HIS A1290 -20.670 6.492 13.390 1.00 40.81 ATOM 212 C HIS A1290 -21.891 5.582 13.215 1.00 40.63 ATOM 213 O HIS A1290 -22.084 4.651 14.001 1.00 41.90 ATOM 214 CB HIS A1290 -21.018 7.589 14.400 1.00 40.05 ATOM 215 CG HIS A1290 -19.827 8.319 14.934 1.00 38.87 ATOM 216 ND1 HIS A1290 -19.108 7.870 16.019 1.00 39.30 ATOM 217 CD2 HIS A1290 -19.242 9.476 14.547 1.00 39.65 ATOM 218 CE1 HIS A1290 -18.123 8.713 16.271 1.00 39.61 ATOM 219 NE2 HIS A1290 -18.184 9.698 15.393 1.00 37.90 ATOM 220 N SER A1291 -22.718 5.866 12.209 1.00 40.91 ATOM 221 CA SER A1291 -23.977 5.146 12.012 1.00 41.05 ATOM 222 C SER A1291 -23.773 3.782 11.355 1.00 41.06 ATOM 223 O SER A1291 -23.137 3.684 10.305 1.00 42.78 ATOM 224 CB SER A1291 -24.940 5.975 11.159 1.00 41.36 ATOM 225 OG SER A1291 -26.190 5.316 11.022 1.00 41.06 ATOM 226 N ASP A1292 -24.332 2.747 11.980 1.00 40.33 ATOM 227 CA ASP A1292 -24.451 1.417 11.371 1.00 40.20 ATOM 228 C ASP A1292 -25.872 1.170 10.830 1.00 37.73 ATOM 229 O ASP A1292 -26.265 0.022 10.615 1.00 38.00 ATOM 230 CB ASP A1292 -24.019 0.314 12.364 1.00 42.56 ATOM 231 CG ASP A1292 -24.920 0.213 13.599 1.00 44.14 ATOM 232 OD1 ASP A1292 -25.697 1.152 13.881 1.00 45.99 ATOM 233 OD2 ASP A1292 -24.835 -0.816 14.303 1.00 46.29 ATOM 234 N ASP A1293 -26.627 2.248 10.591 1.00 34.62 ATOM 235 CA ASP A1293 -28.015 2.145 10.151 1.00 32.77 ATOM 236 C ASP A1293 -28.059 1.752 8.677 1.00 32.08 ATOM 237 O ASP A1293 -27.531 2.464 7.817 1.00 31.30 ATOM 238 CB ASP A1293 -28.744 3.479 10.373 1.00 31.84 ATOM 239 CG ASP A1293 -30.249 3.394 10.137 1.00 32.08 ATOM 240 OD1 ASP A1293 -30.796 2.283 9.932 1.00 30.12 ATOM 241 OD2 ASP A1293 -30.899 4.464 10.180 1.00 30.34 ATOM 242 ZN ZN A1401 -26.550 21.398 10.702 0.90 32.62 ATOM 243 ZN ZN A1402 -17.685 11.838 15.561 1.00 38.38 TER