HEADER DNA BINDING PROTEIN 31-DEC-69 6A58 TITLE Structure of histone demethylase REF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 FRAGMENT: Ig gamma-1 chain C ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.57 ANGSTORMS DBREF 6A58 A 1223 1360 UNP Q9STM3 REF6_ARATH 1223 1360 SEQRES 1 A 30 ARG PRO LEU LYS CYS PRO TRP LYS GLY CYS LYS MET THR SEQRES 2 A 30 PHE LYS TRP ALA TRP SER ARG THR GLU HIS ILE ARG VAL SEQRES 3 A 30 HIS THR GLY ALA ATOM 1 N ARG A1294 -28.685 0.606 8.412 1.00 31.21 ATOM 2 CA ARG A1294 -28.912 0.097 7.066 1.00 31.80 ATOM 3 C ARG A1294 -30.417 -0.154 6.948 1.00 29.85 ATOM 4 O ARG A1294 -30.885 -1.272 7.181 1.00 29.78 ATOM 5 CB ARG A1294 -28.102 -1.185 6.848 1.00 33.18 ATOM 6 CG ARG A1294 -26.601 -0.971 6.962 1.00 35.47 ATOM 7 CD ARG A1294 -25.809 -2.152 6.423 1.00 38.30 ATOM 8 NE ARG A1294 -26.109 -3.397 7.132 1.00 41.55 ATOM 9 CZ ARG A1294 -25.636 -3.743 8.334 1.00 44.31 ATOM 10 NH1 ARG A1294 -24.820 -2.940 9.022 1.00 45.94 ATOM 11 NH2 ARG A1294 -25.992 -4.913 8.865 1.00 45.47 ATOM 12 N PRO A1295 -31.195 0.903 6.620 1.00 28.77 ATOM 13 CA PRO A1295 -32.657 0.801 6.718 1.00 28.43 ATOM 14 C PRO A1295 -33.359 -0.093 5.693 1.00 27.78 ATOM 15 O PRO A1295 -34.493 -0.505 5.936 1.00 28.01 ATOM 16 CB PRO A1295 -33.133 2.251 6.520 1.00 28.56 ATOM 17 CG PRO A1295 -31.926 3.103 6.672 1.00 28.68 ATOM 18 CD PRO A1295 -30.777 2.262 6.228 1.00 28.65 ATOM 19 N LEU A1296 -32.702 -0.367 4.567 1.00 28.47 ATOM 20 CA LEU A1296 -33.348 -1.012 3.423 1.00 28.49 ATOM 21 C LEU A1296 -33.063 -2.512 3.406 1.00 28.48 ATOM 22 O LEU A1296 -31.930 -2.925 3.155 1.00 29.75 ATOM 23 CB LEU A1296 -32.857 -0.360 2.129 1.00 28.38 ATOM 24 CG LEU A1296 -33.055 1.161 2.029 1.00 28.84 ATOM 25 CD1 LEU A1296 -32.480 1.673 0.721 1.00 29.22 ATOM 26 CD2 LEU A1296 -34.522 1.542 2.172 1.00 29.02 ATOM 27 N LYS A1297 -34.099 -3.312 3.669 1.00 28.89 ATOM 28 CA LYS A1297 -33.974 -4.773 3.732 1.00 30.00 ATOM 29 C LYS A1297 -34.080 -5.371 2.340 1.00 28.06 ATOM 30 O LYS A1297 -34.844 -4.890 1.507 1.00 27.84 ATOM 31 CB LYS A1297 -35.069 -5.382 4.613 1.00 32.12 ATOM 32 CG LYS A1297 -34.934 -5.078 6.097 1.00 35.22 ATOM 33 CD LYS A1297 -35.940 -5.873 6.918 1.00 37.22 ATOM 34 CE LYS A1297 -35.581 -5.878 8.396 1.00 39.01 ATOM 35 NZ LYS A1297 -35.613 -4.518 8.998 1.00 40.77 ATOM 36 N CYS A1298 -33.317 -6.431 2.097 1.00 27.62 ATOM 37 CA CYS A1298 -33.452 -7.190 0.861 1.00 27.24 ATOM 38 C CYS A1298 -34.842 -7.832 0.817 1.00 27.01 ATOM 39 O CYS A1298 -35.276 -8.414 1.813 1.00 27.67 ATOM 40 CB CYS A1298 -32.383 -8.274 0.776 1.00 27.14 ATOM 41 SG CYS A1298 -32.467 -9.223 -0.761 1.00 27.55 ATOM 42 N PRO A1299 -35.542 -7.726 -0.330 1.00 26.74 ATOM 43 CA PRO A1299 -36.883 -8.300 -0.443 1.00 27.19 ATOM 44 C PRO A1299 -36.921 -9.803 -0.747 1.00 27.32 ATOM 45 O PRO A1299 -38.010 -10.369 -0.781 1.00 28.34 ATOM 46 CB PRO A1299 -37.484 -7.522 -1.612 1.00 27.38 ATOM 47 CG PRO A1299 -36.317 -7.251 -2.490 1.00 27.55 ATOM 48 CD PRO A1299 -35.174 -6.979 -1.551 1.00 27.08 ATOM 49 N TRP A1300 -35.763 -10.431 -0.960 1.00 26.92 ATOM 50 CA TRP A1300 -35.686 -11.852 -1.330 1.00 27.56 ATOM 51 C TRP A1300 -35.868 -12.707 -0.077 1.00 28.01 ATOM 52 O TRP A1300 -35.054 -12.627 0.843 1.00 27.73 ATOM 53 CB TRP A1300 -34.324 -12.138 -1.977 1.00 27.21 ATOM 54 CG TRP A1300 -34.292 -13.246 -2.988 1.00 27.06 ATOM 55 CD1 TRP A1300 -33.738 -14.479 -2.832 1.00 27.33 ATOM 56 CD2 TRP A1300 -34.785 -13.193 -4.332 1.00 26.64 ATOM 57 NE1 TRP A1300 -33.872 -15.211 -3.991 1.00 27.27 ATOM 58 CE2 TRP A1300 -34.523 -14.448 -4.923 1.00 26.55 ATOM 59 CE3 TRP A1300 -35.437 -12.212 -5.090 1.00 26.91 ATOM 60 CZ2 TRP A1300 -34.876 -14.742 -6.246 1.00 26.86 ATOM 61 CZ3 TRP A1300 -35.793 -12.505 -6.397 1.00 26.76 ATOM 62 CH2 TRP A1300 -35.509 -13.759 -6.963 1.00 26.55 ATOM 63 N LYS A1301 -36.926 -13.518 -0.034 1.00 28.88 ATOM 64 CA LYS A1301 -37.193 -14.366 1.135 1.00 30.06 ATOM 65 C LYS A1301 -35.974 -15.222 1.471 1.00 29.82 ATOM 66 O LYS A1301 -35.339 -15.779 0.574 1.00 29.38 ATOM 67 CB LYS A1301 -38.398 -15.279 0.899 1.00 30.95 ATOM 68 CG LYS A1301 -39.737 -14.565 0.849 1.00 32.06 ATOM 69 CD LYS A1301 -40.822 -15.449 0.247 1.00 33.77 ATOM 70 CE LYS A1301 -41.148 -16.647 1.123 1.00 35.39 ATOM 71 NZ LYS A1301 -42.186 -17.520 0.506 1.00 36.30 ATOM 72 N GLY A1302 -35.654 -15.308 2.763 1.00 30.96 ATOM 73 CA GLY A1302 -34.468 -16.020 3.242 1.00 31.34 ATOM 74 C GLY A1302 -33.214 -15.177 3.406 1.00 31.66 ATOM 75 O GLY A1302 -32.280 -15.597 4.092 1.00 32.81 ATOM 76 N CYS A1303 -33.180 -13.996 2.785 1.00 30.98 ATOM 77 CA CYS A1303 -32.015 -13.129 2.831 1.00 30.73 ATOM 78 C CYS A1303 -32.187 -12.104 3.941 1.00 31.57 ATOM 79 O CYS A1303 -33.218 -11.440 4.016 1.00 32.44 ATOM 80 CB CYS A1303 -31.832 -12.414 1.496 1.00 29.65 ATOM 81 SG CYS A1303 -30.298 -11.479 1.407 1.00 28.96 ATOM 82 N LYS A1304 -31.165 -11.977 4.785 1.00 34.14 ATOM 83 CA LYS A1304 -31.192 -11.065 5.930 1.00 35.41 ATOM 84 C LYS A1304 -30.308 -9.831 5.714 1.00 34.85 ATOM 85 O LYS A1304 -30.087 -9.061 6.652 1.00 34.71 ATOM 86 CB LYS A1304 -30.763 -11.818 7.196 1.00 38.53 ATOM 87 CG LYS A1304 -31.612 -13.046 7.486 1.00 40.86 ATOM 88 CD LYS A1304 -31.381 -13.591 8.888 1.00 42.80 ATOM 89 CE LYS A1304 -32.311 -14.760 9.175 1.00 44.05 ATOM 90 NZ LYS A1304 -32.259 -15.201 10.596 1.00 45.35 ATOM 91 N MET A1305 -29.828 -9.623 4.486 1.00 32.76 ATOM 92 CA MET A1305 -28.935 -8.500 4.195 1.00 33.28 ATOM 93 C MET A1305 -29.698 -7.182 4.184 1.00 31.42 ATOM 94 O MET A1305 -30.863 -7.130 3.800 1.00 29.60 ATOM 95 CB MET A1305 -28.203 -8.702 2.868 1.00 36.16 ATOM 96 CG MET A1305 -27.259 -9.895 2.887 1.00 39.27 ATOM 97 SD MET A1305 -25.934 -9.791 1.674 1.00 45.81 ATOM 98 CE MET A1305 -24.931 -8.478 2.366 1.00 44.27 ATOM 99 N THR A1306 -29.013 -6.129 4.619 1.00 30.63 ATOM 100 CA THR A1306 -29.584 -4.789 4.741 1.00 30.00 ATOM 101 C THR A1306 -28.637 -3.774 4.118 1.00 29.27 ATOM 102 O THR A1306 -27.434 -4.031 3.991 1.00 28.54 ATOM 103 CB THR A1306 -29.830 -4.427 6.217 1.00 30.88 ATOM 104 OG1 THR A1306 -28.633 -4.644 6.971 1.00 31.67 ATOM 105 CG2 THR A1306 -30.952 -5.273 6.793 1.00 31.31 ATOM 106 N PHE A1307 -29.188 -2.626 3.718 1.00 28.41 ATOM 107 CA PHE A1307 -28.443 -1.630 2.940 1.00 29.33 ATOM 108 C PHE A1307 -28.745 -0.203 3.360 1.00 30.00 ATOM 109 O PHE A1307 -29.848 0.110 3.804 1.00 29.53 ATOM 110 CB PHE A1307 -28.736 -1.820 1.450 1.00 29.55 ATOM 111 CG PHE A1307 -28.411 -3.198 0.980 1.00 30.21 ATOM 112 CD1 PHE A1307 -27.109 -3.523 0.634 1.00 30.85 ATOM 113 CD2 PHE A1307 -29.381 -4.196 0.986 1.00 30.85 ATOM 114 CE1 PHE A1307 -26.783 -4.811 0.247 1.00 31.35 ATOM 115 CE2 PHE A1307 -29.059 -5.487 0.603 1.00 30.73 ATOM 116 CZ PHE A1307 -27.759 -5.789 0.234 1.00 30.65 ATOM 117 N LYS A1308 -27.731 0.646 3.214 1.00 31.87 ATOM 118 CA LYS A1308 -27.852 2.075 3.475 1.00 33.22 ATOM 119 C LYS A1308 -28.548 2.805 2.327 1.00 34.79 ATOM 120 O LYS A1308 -29.394 3.667 2.577 1.00 36.05 ATOM 121 CB LYS A1308 -26.466 2.683 3.701 1.00 33.20 ATOM 122 N TRP A1309 -28.197 2.445 1.085 1.00 36.14 ATOM 123 CA TRP A1309 -28.681 3.133 -0.119 0.50 37.43 ATOM 124 C TRP A1309 -29.461 2.192 -1.033 1.00 37.35 ATOM 125 O TRP A1309 -29.161 0.995 -1.110 1.00 36.05 ATOM 126 CB TRP A1309 -27.506 3.726 -0.898 0.50 39.05 ATOM 127 CG TRP A1309 -26.660 4.672 -0.099 0.50 40.63 ATOM 128 CD1 TRP A1309 -27.006 5.922 0.326 0.50 41.54 ATOM 129 CD2 TRP A1309 -25.322 4.448 0.363 0.50 41.80 ATOM 130 NE1 TRP A1309 -25.969 6.487 1.028 0.50 41.95 ATOM 131 CE2 TRP A1309 -24.924 5.603 1.065 0.50 42.11 ATOM 132 CE3 TRP A1309 -24.424 3.381 0.254 0.50 42.14 ATOM 133 CZ2 TRP A1309 -23.666 5.722 1.654 0.50 42.39 ATOM 134 CZ3 TRP A1309 -23.176 3.502 0.839 0.50 42.35 ATOM 135 CH2 TRP A1309 -22.809 4.664 1.530 0.50 42.36 ATOM 136 N ALA A1310 -30.451 2.745 -1.733 1.00 36.31 ATOM 137 CA ALA A1310 -31.304 1.979 -2.647 1.00 35.74 ATOM 138 C ALA A1310 -30.526 1.356 -3.806 1.00 35.76 ATOM 139 O ALA A1310 -30.817 0.226 -4.199 1.00 33.47 ATOM 140 CB ALA A1310 -32.430 2.853 -3.181 1.00 36.30 ATOM 141 N TRP A1311 -29.546 2.084 -4.350 1.00 36.11 ATOM 142 CA TRP A1311 -28.721 1.557 -5.449 1.00 36.34 ATOM 143 C TRP A1311 -27.930 0.307 -5.035 1.00 35.34 ATOM 144 O TRP A1311 -27.817 -0.638 -5.818 1.00 34.50 ATOM 145 CB TRP A1311 -27.792 2.636 -6.045 1.00 37.97 ATOM 146 CG TRP A1311 -26.680 3.111 -5.151 1.00 38.91 ATOM 147 CD1 TRP A1311 -26.682 4.226 -4.359 1.00 39.60 ATOM 148 CD2 TRP A1311 -25.394 2.499 -4.978 1.00 39.93 ATOM 149 NE1 TRP A1311 -25.486 4.336 -3.694 1.00 39.74 ATOM 150 CE2 TRP A1311 -24.676 3.292 -4.055 1.00 40.42 ATOM 151 CE3 TRP A1311 -24.784 1.351 -5.504 1.00 40.98 ATOM 152 CZ2 TRP A1311 -23.373 2.974 -3.645 1.00 41.56 ATOM 153 CZ3 TRP A1311 -23.487 1.032 -5.097 1.00 41.26 ATOM 154 CH2 TRP A1311 -22.796 1.846 -4.175 1.00 41.57 ATOM 155 N SER A1312 -27.400 0.308 -3.810 1.00 33.74 ATOM 156 CA SER A1312 -26.675 -0.842 -3.262 1.00 33.55 ATOM 157 C SER A1312 -27.588 -2.058 -3.115 1.00 31.53 ATOM 158 O SER A1312 -27.183 -3.184 -3.427 1.00 31.58 ATOM 159 CB SER A1312 -26.060 -0.499 -1.902 1.00 35.00 ATOM 160 OG SER A1312 -25.161 0.590 -2.006 1.00 37.73 ATOM 161 N ARG A1313 -28.810 -1.831 -2.636 1.00 30.07 ATOM 162 CA ARG A1313 -29.793 -2.914 -2.518 1.00 29.04 ATOM 163 C ARG A1313 -30.167 -3.451 -3.896 1.00 29.51 ATOM 164 O ARG A1313 -30.212 -4.663 -4.093 1.00 28.33 ATOM 165 CB ARG A1313 -31.056 -2.460 -1.776 1.00 28.86 ATOM 166 CG ARG A1313 -32.152 -3.520 -1.746 1.00 28.93 ATOM 167 CD ARG A1313 -33.261 -3.204 -0.765 1.00 28.79 ATOM 168 NE ARG A1313 -34.042 -2.031 -1.154 1.00 28.94 ATOM 169 CZ ARG A1313 -35.130 -1.594 -0.517 1.00 28.90 ATOM 170 NH1 ARG A1313 -35.594 -2.221 0.562 1.00 29.53 ATOM 171 NH2 ARG A1313 -35.761 -0.505 -0.958 1.00 29.58 ATOM 172 N THR A1314 -30.448 -2.551 -4.838 1.00 30.15 ATOM 173 CA THR A1314 -30.806 -2.949 -6.206 1.00 30.62 ATOM 174 C THR A1314 -29.704 -3.786 -6.868 1.00 30.42 ATOM 175 O THR A1314 -29.991 -4.817 -7.483 1.00 29.89 ATOM 176 CB THR A1314 -31.152 -1.720 -7.072 1.00 31.40 ATOM 177 OG1 THR A1314 -32.301 -1.069 -6.519 1.00 32.90 ATOM 178 CG2 THR A1314 -31.450 -2.119 -8.515 1.00 32.33 ATOM 179 N GLU A1315 -28.455 -3.343 -6.740 1.00 30.66 ATOM 180 CA GLU A1315 -27.310 -4.117 -7.234 1.00 31.18 ATOM 181 C GLU A1315 -27.249 -5.500 -6.582 1.00 30.36 ATOM 182 O GLU A1315 -27.063 -6.504 -7.271 1.00 30.43 ATOM 183 CB GLU A1315 -25.993 -3.359 -7.025 1.00 32.29 ATOM 184 CG GLU A1315 -25.778 -2.242 -8.038 1.00 33.48 ATOM 185 CD GLU A1315 -24.403 -1.596 -7.959 1.00 34.23 ATOM 186 OE1 GLU A1315 -23.616 -1.915 -7.040 1.00 36.31 ATOM 187 OE2 GLU A1315 -24.109 -0.756 -8.831 1.00 36.43 ATOM 188 N HIS A1316 -27.428 -5.546 -5.263 1.00 28.23 ATOM 189 CA HIS A1316 -27.434 -6.815 -4.528 1.00 27.60 ATOM 190 C HIS A1316 -28.498 -7.807 -5.000 1.00 26.53 ATOM 191 O HIS A1316 -28.216 -9.004 -5.115 1.00 26.44 ATOM 192 CB HIS A1316 -27.604 -6.588 -3.026 1.00 27.61 ATOM 193 CG HIS A1316 -27.951 -7.834 -2.275 1.00 27.66 ATOM 194 ND1 HIS A1316 -27.015 -8.794 -1.960 1.00 28.17 ATOM 195 CD2 HIS A1316 -29.134 -8.287 -1.797 1.00 27.93 ATOM 196 CE1 HIS A1316 -27.606 -9.782 -1.312 1.00 28.37 ATOM 197 NE2 HIS A1316 -28.891 -9.499 -1.200 1.00 28.44 ATOM 198 N ILE A1317 -29.709 -7.320 -5.268 1.00 25.70 ATOM 199 CA ILE A1317 -30.817 -8.190 -5.700 1.00 25.15 ATOM 200 C ILE A1317 -30.460 -8.955 -6.986 1.00 25.08 ATOM 201 O ILE A1317 -30.909 -10.089 -7.182 1.00 24.68 ATOM 202 CB ILE A1317 -32.142 -7.400 -5.855 1.00 25.13 ATOM 203 CG1 ILE A1317 -32.631 -6.910 -4.487 1.00 25.78 ATOM 204 CG2 ILE A1317 -33.235 -8.257 -6.487 1.00 25.09 ATOM 205 CD1 ILE A1317 -33.607 -5.755 -4.554 1.00 26.14 ATOM 206 N ARG A1318 -29.625 -8.360 -7.838 1.00 24.18 ATOM 207 CA ARG A1318 -29.153 -9.038 -9.049 1.00 24.59 ATOM 208 C ARG A1318 -28.384 -10.333 -8.759 1.00 24.69 ATOM 209 O ARG A1318 -28.358 -11.228 -9.604 1.00 24.66 ATOM 210 CB ARG A1318 -28.293 -8.109 -9.911 1.00 25.03 ATOM 211 CG ARG A1318 -29.034 -6.894 -10.452 1.00 25.97 ATOM 212 CD ARG A1318 -28.072 -5.917 -11.097 1.00 26.27 ATOM 213 NE ARG A1318 -28.707 -4.621 -11.314 1.00 27.05 ATOM 214 CZ ARG A1318 -28.055 -3.467 -11.487 1.00 27.09 ATOM 215 NH1 ARG A1318 -26.725 -3.415 -11.491 1.00 27.26 ATOM 216 NH2 ARG A1318 -28.751 -2.346 -11.660 1.00 28.03 ATOM 217 N VAL A1319 -27.766 -10.434 -7.580 1.00 24.71 ATOM 218 CA VAL A1319 -27.092 -11.675 -7.161 1.00 25.02 ATOM 219 C VAL A1319 -28.112 -12.812 -7.081 1.00 25.18 ATOM 220 O VAL A1319 -27.825 -13.931 -7.505 1.00 25.48 ATOM 221 CB VAL A1319 -26.352 -11.520 -5.806 1.00 26.26 ATOM 222 CG1 VAL A1319 -25.723 -12.837 -5.361 1.00 26.94 ATOM 223 CG2 VAL A1319 -25.286 -10.433 -5.898 1.00 26.78 ATOM 224 N HIS A1320 -29.298 -12.513 -6.554 1.00 24.14 ATOM 225 CA HIS A1320 -30.377 -13.495 -6.445 1.00 24.69 ATOM 226 C HIS A1320 -31.026 -13.818 -7.785 1.00 24.93 ATOM 227 O HIS A1320 -31.352 -14.976 -8.045 1.00 24.91 ATOM 228 CB HIS A1320 -31.474 -13.005 -5.502 1.00 24.96 ATOM 229 CG HIS A1320 -31.017 -12.759 -4.099 1.00 25.49 ATOM 230 ND1 HIS A1320 -30.328 -13.698 -3.362 1.00 26.62 ATOM 231 CD2 HIS A1320 -31.189 -11.692 -3.283 1.00 25.50 ATOM 232 CE1 HIS A1320 -30.070 -13.210 -2.162 1.00 27.47 ATOM 233 NE2 HIS A1320 -30.590 -11.998 -2.085 1.00 26.04 ATOM 234 N THR A1321 -31.249 -12.800 -8.621 1.00 24.37 ATOM 235 CA THR A1321 -31.920 -13.006 -9.913 1.00 24.77 ATOM 236 C THR A1321 -30.987 -13.554 -10.999 1.00 24.75 ATOM 237 O THR A1321 -31.459 -14.125 -11.982 1.00 26.12 ATOM 238 CB THR A1321 -32.561 -11.713 -10.444 1.00 25.28 ATOM 239 OG1 THR A1321 -31.533 -10.759 -10.734 1.00 26.08 ATOM 240 CG2 THR A1321 -33.548 -11.137 -9.425 1.00 25.40 ATOM 241 N GLY A1322 -29.677 -13.361 -10.830 1.00 24.48 ATOM 242 CA GLY A1322 -28.687 -13.766 -11.829 1.00 25.01 ATOM 243 C GLY A1322 -28.541 -12.794 -12.989 1.00 26.02 ATOM 244 O GLY A1322 -27.900 -13.121 -13.987 1.00 26.79 ATOM 245 N ALA A1323 -29.109 -11.594 -12.853 1.00 26.25 ATOM 246 CA ALA A1323 -29.069 -10.598 -13.925 1.00 26.44 ATOM 247 C ALA A1323 -27.644 -10.096 -14.144 1.00 26.60 ATOM 248 O ALA A1323 -26.921 -9.850 -13.180 1.00 27.07 ATOM 249 CB ALA A1323 -29.988 -9.433 -13.591 1.00 26.46 ATOM 250 ZN ZN A1403 -30.627 -10.531 -0.618 0.80 31.10 TER