HEADER DNA BINDING PROTEIN 31-DEC-69 6A59 TITLE Structure of histone demethylase REF6 at 1.8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 FRAGMENT: Ig gamma-1 chain C ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.82 ANGSTORMS DBREF 6A59 A 1223 1360 UNP Q9STM3 REF6_ARATH 1223 1360 SEQRES 1 A 30 ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN THR SEQRES 2 A 30 PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG LYS SEQRES 3 A 30 THR GLY HIS SER ATOM 1 N ARG A1324 27.767 -10.184 40.771 1.00 27.48 ATOM 2 CA ARG A1324 26.478 -9.606 41.144 1.00 28.42 ATOM 3 C ARG A1324 26.727 -8.634 42.302 1.00 29.20 ATOM 4 O ARG A1324 26.525 -8.985 43.465 1.00 28.82 ATOM 5 CB ARG A1324 25.485 -10.712 41.498 1.00 29.47 ATOM 6 CG ARG A1324 25.234 -11.647 40.321 1.00 30.14 ATOM 7 CD ARG A1324 24.082 -12.592 40.564 1.00 30.84 ATOM 8 NE ARG A1324 22.772 -11.949 40.462 1.00 30.15 ATOM 9 CZ ARG A1324 22.083 -11.739 39.337 1.00 30.41 ATOM 10 NH1 ARG A1324 20.887 -11.161 39.409 1.00 29.96 ATOM 11 NH2 ARG A1324 22.558 -12.097 38.142 1.00 30.82 ATOM 12 N PRO A1325 27.197 -7.409 41.982 1.00 29.16 ATOM 13 CA PRO A1325 27.680 -6.491 43.025 1.00 29.41 ATOM 14 C PRO A1325 26.631 -5.943 43.996 1.00 29.56 ATOM 15 O PRO A1325 26.998 -5.528 45.094 1.00 31.48 ATOM 16 CB PRO A1325 28.288 -5.328 42.224 1.00 30.13 ATOM 17 CG PRO A1325 28.446 -5.827 40.832 1.00 29.97 ATOM 18 CD PRO A1325 27.338 -6.810 40.641 1.00 29.85 ATOM 19 N TYR A1326 25.360 -5.933 43.598 1.00 29.89 ATOM 20 CA TYR A1326 24.301 -5.274 44.373 1.00 31.52 ATOM 21 C TYR A1326 23.490 -6.311 45.137 1.00 33.58 ATOM 22 O TYR A1326 22.857 -7.175 44.534 1.00 33.01 ATOM 23 CB TYR A1326 23.419 -4.438 43.445 1.00 30.52 ATOM 24 CG TYR A1326 24.245 -3.587 42.509 1.00 30.09 ATOM 25 CD1 TYR A1326 24.876 -2.432 42.965 1.00 30.59 ATOM 26 CD2 TYR A1326 24.442 -3.963 41.179 1.00 29.37 ATOM 27 CE1 TYR A1326 25.659 -1.661 42.119 1.00 29.74 ATOM 28 CE2 TYR A1326 25.223 -3.201 40.325 1.00 29.18 ATOM 29 CZ TYR A1326 25.831 -2.049 40.800 1.00 30.00 ATOM 30 OH TYR A1326 26.607 -1.285 39.961 1.00 29.45 ATOM 31 N VAL A1327 23.542 -6.225 46.467 1.00 35.27 ATOM 32 CA VAL A1327 22.882 -7.175 47.360 1.00 37.10 ATOM 33 C VAL A1327 21.849 -6.416 48.190 1.00 39.43 ATOM 34 O VAL A1327 22.152 -5.359 48.750 1.00 38.63 ATOM 35 CB VAL A1327 23.895 -7.858 48.308 1.00 37.86 ATOM 36 CG1 VAL A1327 23.225 -8.980 49.099 1.00 38.18 ATOM 37 CG2 VAL A1327 25.094 -8.392 47.529 1.00 37.91 ATOM 38 N CYS A1328 20.637 -6.964 48.271 1.00 41.61 ATOM 39 CA CYS A1328 19.559 -6.353 49.050 1.00 44.04 ATOM 40 C CYS A1328 19.868 -6.413 50.545 1.00 46.20 ATOM 41 O CYS A1328 20.376 -7.422 51.037 1.00 45.40 ATOM 42 CB CYS A1328 18.227 -7.044 48.766 1.00 43.54 ATOM 43 SG CYS A1328 16.814 -6.207 49.519 1.00 47.54 ATOM 44 N ALA A1329 19.551 -5.327 51.251 1.00 49.46 ATOM 45 CA ALA A1329 19.899 -5.164 52.669 1.00 52.09 ATOM 46 C ALA A1329 18.831 -5.660 53.657 1.00 55.20 ATOM 47 O ALA A1329 19.069 -5.641 54.867 1.00 57.52 ATOM 48 CB ALA A1329 20.227 -3.704 52.951 1.00 52.71 ATOM 49 N GLU A1330 17.673 -6.104 53.159 1.00 56.45 ATOM 50 CA GLU A1330 16.588 -6.574 54.029 1.00 56.77 ATOM 51 C GLU A1330 16.939 -7.918 54.677 1.00 58.90 ATOM 52 O GLU A1330 17.686 -8.704 54.088 1.00 60.31 ATOM 53 CB GLU A1330 15.278 -6.699 53.252 1.00 55.58 ATOM 54 N PRO A1331 16.388 -8.195 55.882 1.00 61.00 ATOM 55 CA PRO A1331 16.841 -9.361 56.657 1.00 60.32 ATOM 56 C PRO A1331 16.547 -10.716 56.007 1.00 60.96 ATOM 57 O PRO A1331 17.426 -11.581 55.980 1.00 63.96 ATOM 58 CB PRO A1331 16.076 -9.232 57.990 1.00 60.84 ATOM 59 CG PRO A1331 15.418 -7.894 57.970 1.00 60.60 ATOM 60 CD PRO A1331 15.236 -7.540 56.529 1.00 60.50 ATOM 61 N ASP A1332 15.330 -10.884 55.488 1.00 58.86 ATOM 62 CA ASP A1332 14.873 -12.169 54.949 1.00 59.80 ATOM 63 C ASP A1332 14.662 -12.126 53.428 1.00 59.07 ATOM 64 O ASP A1332 13.690 -12.694 52.915 1.00 60.93 ATOM 65 CB ASP A1332 13.581 -12.591 55.662 1.00 62.12 ATOM 66 CG ASP A1332 13.698 -12.523 57.179 1.00 65.34 ATOM 67 OD1 ASP A1332 14.720 -12.997 57.724 1.00 70.26 ATOM 68 OD2 ASP A1332 12.768 -11.995 57.824 1.00 69.34 ATOM 69 N CYS A1333 15.577 -11.465 52.713 1.00 54.54 ATOM 70 CA CYS A1333 15.531 -11.392 51.247 1.00 50.70 ATOM 71 C CYS A1333 16.795 -12.005 50.641 1.00 47.62 ATOM 72 O CYS A1333 16.725 -13.061 50.006 1.00 45.95 ATOM 73 CB CYS A1333 15.337 -9.947 50.774 1.00 50.06 ATOM 74 SG CYS A1333 15.340 -9.756 48.974 1.00 49.86 ATOM 75 N GLY A1334 17.937 -11.347 50.848 1.00 44.83 ATOM 76 CA GLY A1334 19.231 -11.812 50.341 1.00 42.21 ATOM 77 C GLY A1334 19.389 -11.874 48.827 1.00 40.05 ATOM 78 O GLY A1334 20.284 -12.557 48.330 1.00 37.15 ATOM 79 N GLN A1335 18.550 -11.142 48.096 1.00 38.71 ATOM 80 CA GLN A1335 18.541 -11.197 46.634 1.00 37.98 ATOM 81 C GLN A1335 19.689 -10.351 46.067 1.00 35.75 ATOM 82 O GLN A1335 19.976 -9.274 46.591 1.00 34.73 ATOM 83 CB GLN A1335 17.190 -10.714 46.106 1.00 39.53 ATOM 84 CG GLN A1335 16.870 -11.175 44.697 1.00 40.86 ATOM 85 CD GLN A1335 15.441 -10.877 44.279 1.00 40.52 ATOM 86 OE1 GLN A1335 14.517 -10.914 45.093 1.00 44.61 ATOM 87 NE2 GLN A1335 15.250 -10.595 42.998 1.00 40.96 ATOM 88 N THR A1336 20.343 -10.852 45.014 1.00 33.98 ATOM 89 CA THR A1336 21.481 -10.165 44.378 1.00 31.58 ATOM 90 C THR A1336 21.148 -9.742 42.955 1.00 31.32 ATOM 91 O THR A1336 20.292 -10.348 42.300 1.00 28.98 ATOM 92 CB THR A1336 22.743 -11.046 44.318 1.00 31.61 ATOM 93 OG1 THR A1336 22.521 -12.153 43.433 1.00 30.15 ATOM 94 CG2 THR A1336 23.116 -11.553 45.704 1.00 32.21 ATOM 95 N PHE A1337 21.847 -8.712 42.477 1.00 30.22 ATOM 96 CA PHE A1337 21.590 -8.129 41.160 1.00 30.50 ATOM 97 C PHE A1337 22.879 -7.836 40.407 1.00 29.16 ATOM 98 O PHE A1337 23.897 -7.481 41.002 1.00 26.06 ATOM 99 CB PHE A1337 20.744 -6.863 41.297 1.00 31.77 ATOM 100 CG PHE A1337 19.494 -7.076 42.088 1.00 32.46 ATOM 101 CD1 PHE A1337 18.329 -7.500 41.462 1.00 33.17 ATOM 102 CD2 PHE A1337 19.494 -6.910 43.469 1.00 32.88 ATOM 103 CE1 PHE A1337 17.175 -7.725 42.196 1.00 34.23 ATOM 104 CE2 PHE A1337 18.345 -7.137 44.208 1.00 33.74 ATOM 105 CZ PHE A1337 17.184 -7.542 43.570 1.00 34.28 ATOM 106 N ARG A1338 22.802 -7.992 39.090 1.00 30.14 ATOM 107 CA ARG A1338 23.928 -7.815 38.181 1.00 32.97 ATOM 108 C ARG A1338 24.093 -6.348 37.773 1.00 33.38 ATOM 109 O ARG A1338 25.221 -5.864 37.640 1.00 30.47 ATOM 110 CB ARG A1338 23.686 -8.682 36.945 1.00 35.99 ATOM 111 CG ARG A1338 24.838 -8.774 35.962 1.00 38.48 ATOM 112 CD ARG A1338 24.671 -9.982 35.045 1.00 41.05 ATOM 113 NE ARG A1338 23.364 -10.057 34.386 1.00 44.17 ATOM 114 CZ ARG A1338 22.880 -11.132 33.753 1.00 44.40 ATOM 115 NH1 ARG A1338 23.581 -12.265 33.670 1.00 45.40 ATOM 116 NH2 ARG A1338 21.674 -11.073 33.191 1.00 47.20 ATOM 117 N PHE A1339 22.967 -5.660 37.567 1.00 34.34 ATOM 118 CA PHE A1339 22.941 -4.250 37.154 1.00 36.32 ATOM 119 C PHE A1339 22.247 -3.399 38.216 1.00 37.14 ATOM 120 O PHE A1339 21.298 -3.856 38.858 1.00 36.42 ATOM 121 CB PHE A1339 22.199 -4.090 35.821 1.00 37.97 ATOM 122 CG PHE A1339 22.577 -5.107 34.773 1.00 39.21 ATOM 123 CD1 PHE A1339 23.905 -5.284 34.394 1.00 40.08 ATOM 124 CD2 PHE A1339 21.599 -5.872 34.140 1.00 39.94 ATOM 125 CE1 PHE A1339 24.248 -6.211 33.415 1.00 39.78 ATOM 126 CE2 PHE A1339 21.938 -6.800 33.164 1.00 41.00 ATOM 127 CZ PHE A1339 23.266 -6.970 32.800 1.00 40.15 ATOM 128 N VAL A1340 22.708 -2.159 38.385 1.00 37.82 ATOM 129 CA VAL A1340 22.146 -1.253 39.397 1.00 39.06 ATOM 130 C VAL A1340 20.667 -0.909 39.144 1.00 39.32 ATOM 131 O VAL A1340 19.903 -0.745 40.098 1.00 38.19 ATOM 132 CB VAL A1340 22.996 0.040 39.563 1.00 39.57 ATOM 133 CG1 VAL A1340 22.832 0.989 38.378 1.00 40.00 ATOM 134 CG2 VAL A1340 22.655 0.744 40.871 1.00 40.60 ATOM 135 N SER A1341 20.276 -0.815 37.871 1.00 40.87 ATOM 136 CA SER A1341 18.880 -0.542 37.493 1.00 42.95 ATOM 137 C SER A1341 17.911 -1.642 37.946 1.00 44.40 ATOM 138 O SER A1341 16.775 -1.345 38.318 1.00 41.39 ATOM 139 CB SER A1341 18.759 -0.326 35.979 1.00 43.79 ATOM 140 OG SER A1341 19.294 -1.420 35.256 1.00 46.63 ATOM 141 N ASP A1342 18.365 -2.897 37.916 1.00 45.19 ATOM 142 CA ASP A1342 17.594 -4.026 38.459 1.00 46.05 ATOM 143 C ASP A1342 17.471 -3.945 39.984 1.00 45.47 ATOM 144 O ASP A1342 16.420 -4.268 40.544 1.00 46.79 ATOM 145 CB ASP A1342 18.232 -5.370 38.073 1.00 46.76 ATOM 146 CG ASP A1342 18.205 -5.639 36.572 1.00 48.30 ATOM 147 OD1 ASP A1342 17.420 -4.998 35.839 1.00 53.60 ATOM 148 OD2 ASP A1342 18.974 -6.516 36.126 1.00 51.69 ATOM 149 N PHE A1343 18.552 -3.527 40.644 1.00 43.87 ATOM 150 CA PHE A1343 18.564 -3.332 42.098 1.00 46.53 ATOM 151 C PHE A1343 17.653 -2.173 42.520 1.00 48.27 ATOM 152 O PHE A1343 16.942 -2.278 43.520 1.00 46.74 ATOM 153 CB PHE A1343 20.005 -3.114 42.591 1.00 46.37 ATOM 154 CG PHE A1343 20.126 -2.858 44.072 1.00 45.66 ATOM 155 CD1 PHE A1343 19.480 -3.673 44.999 1.00 46.62 ATOM 156 CD2 PHE A1343 20.917 -1.811 44.546 1.00 47.52 ATOM 157 CE1 PHE A1343 19.601 -3.438 46.360 1.00 47.96 ATOM 158 CE2 PHE A1343 21.045 -1.575 45.906 1.00 48.55 ATOM 159 CZ PHE A1343 20.386 -2.389 46.815 1.00 49.01 ATOM 160 N SER A1344 17.678 -1.084 41.753 1.00 50.68 ATOM 161 CA SER A1344 16.787 0.062 41.984 1.00 52.87 ATOM 162 C SER A1344 15.316 -0.295 41.751 1.00 54.67 ATOM 163 O SER A1344 14.446 0.121 42.518 1.00 56.09 ATOM 164 CB SER A1344 17.182 1.236 41.087 1.00 53.26 ATOM 165 OG SER A1344 18.515 1.640 41.342 1.00 54.68 ATOM 166 N ARG A1345 15.055 -1.067 40.695 1.00 56.69 ATOM 167 CA ARG A1345 13.707 -1.561 40.385 1.00 58.98 ATOM 168 C ARG A1345 13.123 -2.428 41.506 1.00 60.52 ATOM 169 O ARG A1345 11.923 -2.361 41.780 1.00 61.51 ATOM 170 CB ARG A1345 13.718 -2.353 39.072 1.00 60.56 ATOM 171 CG ARG A1345 12.338 -2.724 38.544 1.00 62.76 ATOM 172 CD ARG A1345 12.387 -3.150 37.083 1.00 64.95 ATOM 173 NE ARG A1345 12.774 -2.049 36.195 1.00 69.06 ATOM 174 CZ ARG A1345 12.869 -2.130 34.865 1.00 72.02 ATOM 175 NH1 ARG A1345 12.602 -3.267 34.222 1.00 74.05 ATOM 176 NH2 ARG A1345 13.235 -1.055 34.168 1.00 73.45 ATOM 177 N HIS A1346 13.972 -3.235 42.143 1.00 60.21 ATOM 178 CA HIS A1346 13.550 -4.079 43.266 1.00 60.90 ATOM 179 C HIS A1346 13.165 -3.262 44.504 1.00 62.56 ATOM 180 O HIS A1346 12.199 -3.598 45.190 1.00 63.50 ATOM 181 CB HIS A1346 14.643 -5.088 43.635 1.00 59.35 ATOM 182 CG HIS A1346 14.166 -6.184 44.535 1.00 57.46 ATOM 183 ND1 HIS A1346 13.436 -7.256 44.070 1.00 59.19 ATOM 184 CD2 HIS A1346 14.307 -6.374 45.868 1.00 57.64 ATOM 185 CE1 HIS A1346 13.146 -8.059 45.077 1.00 59.51 ATOM 186 NE2 HIS A1346 13.665 -7.548 46.178 1.00 58.30 ATOM 187 N LYS A1347 13.929 -2.206 44.786 1.00 63.81 ATOM 188 CA LYS A1347 13.643 -1.303 45.911 1.00 66.18 ATOM 189 C LYS A1347 12.349 -0.497 45.736 1.00 69.06 ATOM 190 O LYS A1347 11.701 -0.151 46.726 1.00 72.31 ATOM 191 CB LYS A1347 14.820 -0.349 46.155 1.00 65.78 ATOM 192 CG LYS A1347 16.059 -1.037 46.707 1.00 65.67 ATOM 193 CD LYS A1347 17.190 -0.056 46.981 1.00 66.03 ATOM 194 CE LYS A1347 17.861 0.412 45.699 1.00 66.19 ATOM 195 NZ LYS A1347 19.058 1.254 45.972 1.00 66.59 ATOM 196 N ARG A1348 11.984 -0.192 44.490 1.00 71.21 ATOM 197 CA ARG A1348 10.720 0.499 44.199 1.00 73.16 ATOM 198 C ARG A1348 9.525 -0.452 44.274 1.00 74.58 ATOM 199 O ARG A1348 8.536 -0.157 44.947 1.00 77.32 ATOM 200 CB ARG A1348 10.759 1.182 42.824 1.00 74.02 ATOM 201 CG ARG A1348 11.537 2.489 42.803 1.00 74.21 ATOM 202 CD ARG A1348 11.321 3.245 41.500 1.00 75.19 ATOM 203 NE ARG A1348 11.948 2.569 40.362 1.00 76.07 ATOM 204 CZ ARG A1348 13.237 2.654 40.019 1.00 75.70 ATOM 205 NH1 ARG A1348 14.100 3.395 40.719 1.00 76.63 ATOM 206 NH2 ARG A1348 13.675 1.983 38.955 1.00 75.42 ATOM 207 N LYS A1349 9.626 -1.585 43.581 1.00 74.68 ATOM 208 CA LYS A1349 8.516 -2.539 43.467 1.00 75.97 ATOM 209 C LYS A1349 8.181 -3.237 44.790 1.00 76.65 ATOM 210 O LYS A1349 7.010 -3.507 45.067 1.00 79.83 ATOM 211 CB LYS A1349 8.813 -3.573 42.375 1.00 76.34 ATOM 212 CG LYS A1349 7.636 -4.477 42.024 1.00 77.59 ATOM 213 CD LYS A1349 7.559 -4.785 40.532 1.00 78.53 ATOM 214 CE LYS A1349 8.776 -5.546 40.026 1.00 78.78 ATOM 215 NZ LYS A1349 8.636 -5.898 38.586 1.00 79.22 ATOM 216 N THR A1350 9.208 -3.529 45.588 1.00 76.39 ATOM 217 CA THR A1350 9.043 -4.063 46.942 1.00 76.89 ATOM 218 C THR A1350 9.742 -3.123 47.921 1.00 78.10 ATOM 219 O THR A1350 10.884 -2.729 47.687 1.00 81.68 ATOM 220 CB THR A1350 9.645 -5.477 47.069 1.00 76.57 ATOM 221 OG1 THR A1350 11.066 -5.421 46.882 1.00 74.31 ATOM 222 CG2 THR A1350 9.037 -6.419 46.037 1.00 77.16 ATOM 223 N GLY A1351 9.070 -2.780 49.019 1.00 78.28 ATOM 224 CA GLY A1351 9.614 -1.844 50.007 1.00 80.04 ATOM 225 C GLY A1351 10.747 -2.431 50.829 1.00 83.80 ATOM 226 O GLY A1351 10.550 -2.809 51.987 1.00 88.29 ATOM 227 N HIS A1352 11.932 -2.498 50.220 1.00 84.42 ATOM 228 CA HIS A1352 13.131 -3.084 50.830 1.00 83.22 ATOM 229 C HIS A1352 14.260 -2.054 50.902 1.00 82.56 ATOM 230 O HIS A1352 14.312 -1.119 50.098 1.00 81.45 ATOM 231 CB HIS A1352 13.590 -4.302 50.021 1.00 82.63 ATOM 232 CG HIS A1352 12.731 -5.514 50.206 1.00 83.76 ATOM 233 ND1 HIS A1352 13.234 -6.722 50.638 1.00 85.39 ATOM 234 CD2 HIS A1352 11.403 -5.705 50.026 1.00 85.00 ATOM 235 CE1 HIS A1352 12.255 -7.605 50.710 1.00 86.18 ATOM 236 NE2 HIS A1352 11.133 -7.013 50.344 1.00 85.96 ATOM 237 N SER A1353 15.162 -2.242 51.865 1.00 82.68 ATOM 238 CA SER A1353 16.309 -1.348 52.054 1.00 83.37 ATOM 239 C SER A1353 17.384 -1.606 51.000 1.00 84.19 ATOM 240 O SER A1353 17.680 -2.754 50.664 1.00 83.93 ATOM 241 CB SER A1353 16.904 -1.525 53.453 1.00 83.01 ATOM 242 OG SER A1353 15.931 -1.290 54.456 1.00 83.33 ATOM 243 ZN ZN A1404 15.103 -7.362 48.631 1.00 62.27 TER