HEADER DNA BINDING PROTEIN 31-DEC-69 6A59 TITLE Structure of histone demethylase REF6 at 1.8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 FRAGMENT: Ig gamma-1 chain C ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.82 ANGSTORMS DBREF 6A59 A 1223 1360 UNP Q9STM3 REF6_ARATH 1223 1360 SEQRES 1 A 30 LYS ARG ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN SEQRES 2 A 30 PHE PHE SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL SEQRES 3 A 30 HIS SER ASP ASP ATOM 1 N LYS A1264 24.004 24.327 9.530 1.00 29.58 ATOM 2 CA LYS A1264 23.595 25.496 10.334 1.00 31.80 ATOM 3 C LYS A1264 22.082 25.795 10.286 1.00 31.83 ATOM 4 O LYS A1264 21.550 26.418 11.211 1.00 32.35 ATOM 5 CB LYS A1264 24.406 26.734 9.939 1.00 33.44 ATOM 6 CG LYS A1264 25.852 26.670 10.394 1.00 34.96 ATOM 7 CD LYS A1264 26.670 27.814 9.813 1.00 37.23 ATOM 8 CE LYS A1264 27.913 28.103 10.644 1.00 38.73 ATOM 9 NZ LYS A1264 27.581 28.717 11.964 1.00 40.04 ATOM 10 N ARG A1265 21.410 25.345 9.219 1.00 30.61 ATOM 11 CA ARG A1265 19.939 25.374 9.116 0.50 31.32 ATOM 12 C ARG A1265 19.279 24.196 9.851 1.00 30.88 ATOM 13 O ARG A1265 18.067 24.008 9.760 1.00 31.48 ATOM 14 CB ARG A1265 19.484 25.379 7.640 0.50 31.51 ATOM 15 CG ARG A1265 19.334 26.757 7.014 0.50 32.13 ATOM 16 CD ARG A1265 20.530 27.129 6.159 0.50 32.71 ATOM 17 NE ARG A1265 20.150 27.982 5.034 0.50 33.46 ATOM 18 CZ ARG A1265 20.978 28.812 4.410 0.50 32.88 ATOM 19 NH1 ARG A1265 22.239 28.922 4.807 0.50 32.80 ATOM 20 NH2 ARG A1265 20.541 29.542 3.397 0.50 32.77 ATOM 21 N ASN A1266 20.070 23.399 10.579 1.00 29.86 ATOM 22 CA ASN A1266 19.581 22.231 11.319 1.00 30.04 ATOM 23 C ASN A1266 18.915 21.154 10.449 1.00 28.77 ATOM 24 O ASN A1266 17.933 20.531 10.857 1.00 29.01 ATOM 25 CB ASN A1266 18.662 22.658 12.482 1.00 30.81 ATOM 26 CG ASN A1266 19.327 23.638 13.434 1.00 31.90 ATOM 27 OD1 ASN A1266 18.737 24.652 13.807 1.00 35.51 ATOM 28 ND2 ASN A1266 20.554 23.341 13.836 1.00 31.55 ATOM 29 N ILE A1267 19.474 20.940 9.259 1.00 27.47 ATOM 30 CA ILE A1267 19.055 19.864 8.360 1.00 27.78 ATOM 31 C ILE A1267 19.957 18.666 8.640 1.00 27.90 ATOM 32 O ILE A1267 21.165 18.832 8.776 1.00 27.86 ATOM 33 CB ILE A1267 19.190 20.275 6.875 1.00 28.18 ATOM 34 CG1 ILE A1267 18.295 21.482 6.566 1.00 28.26 ATOM 35 CG2 ILE A1267 18.831 19.107 5.961 1.00 28.70 ATOM 36 CD1 ILE A1267 18.713 22.270 5.344 1.00 28.98 ATOM 37 N CYS A1268 19.373 17.470 8.717 1.00 27.78 ATOM 38 CA CYS A1268 20.132 16.244 9.005 1.00 28.48 ATOM 39 C CYS A1268 21.285 16.045 8.009 1.00 27.74 ATOM 40 O CYS A1268 21.094 16.265 6.818 1.00 26.63 ATOM 41 CB CYS A1268 19.209 15.028 8.960 1.00 29.76 ATOM 42 SG CYS A1268 20.042 13.466 9.328 1.00 31.82 ATOM 43 N PRO A1269 22.482 15.635 8.492 1.00 27.46 ATOM 44 CA PRO A1269 23.624 15.448 7.581 1.00 28.27 ATOM 45 C PRO A1269 23.597 14.176 6.718 1.00 29.54 ATOM 46 O PRO A1269 24.447 14.036 5.838 1.00 31.15 ATOM 47 CB PRO A1269 24.822 15.394 8.537 1.00 27.97 ATOM 48 CG PRO A1269 24.259 14.849 9.800 1.00 28.21 ATOM 49 CD PRO A1269 22.876 15.429 9.900 1.00 28.18 ATOM 50 N ILE A1270 22.650 13.269 6.967 1.00 30.06 ATOM 51 CA ILE A1270 22.627 11.955 6.322 1.00 30.91 ATOM 52 C ILE A1270 21.899 12.002 4.980 1.00 31.82 ATOM 53 O ILE A1270 20.827 12.594 4.871 1.00 33.40 ATOM 54 CB ILE A1270 21.951 10.900 7.234 1.00 31.64 ATOM 55 CG1 ILE A1270 22.657 10.823 8.598 1.00 32.51 ATOM 56 CG2 ILE A1270 21.906 9.529 6.556 1.00 32.68 ATOM 57 CD1 ILE A1270 24.141 10.515 8.541 1.00 32.79 ATOM 58 N LYS A1271 22.476 11.348 3.975 1.00 32.97 ATOM 59 CA LYS A1271 21.867 11.265 2.641 1.00 34.49 ATOM 60 C LYS A1271 20.501 10.583 2.714 1.00 35.11 ATOM 61 O LYS A1271 20.363 9.538 3.348 1.00 34.48 ATOM 62 CB LYS A1271 22.772 10.488 1.681 1.00 35.14 ATOM 63 CG LYS A1271 24.073 11.191 1.327 1.00 35.25 ATOM 64 CD LYS A1271 25.050 10.232 0.666 1.00 35.28 ATOM 65 CE LYS A1271 26.330 10.935 0.258 1.00 35.91 ATOM 66 NZ LYS A1271 27.368 9.980 -0.218 1.00 36.61 ATOM 67 N GLY A1272 19.498 11.202 2.090 1.00 37.82 ATOM 68 CA GLY A1272 18.150 10.639 2.005 1.00 37.57 ATOM 69 C GLY A1272 17.224 10.810 3.201 1.00 38.14 ATOM 70 O GLY A1272 16.117 10.269 3.186 1.00 42.29 ATOM 71 N CYS A1273 17.646 11.546 4.232 1.00 36.03 ATOM 72 CA CYS A1273 16.797 11.773 5.410 1.00 36.08 ATOM 73 C CYS A1273 15.947 13.031 5.232 1.00 36.96 ATOM 74 O CYS A1273 14.716 12.965 5.242 1.00 39.49 ATOM 75 CB CYS A1273 17.633 11.876 6.683 1.00 35.85 ATOM 76 SG CYS A1273 16.649 12.207 8.162 1.00 35.87 ATOM 77 N GLY A1274 16.614 14.173 5.089 1.00 36.24 ATOM 78 CA GLY A1274 15.943 15.452 4.843 1.00 36.18 ATOM 79 C GLY A1274 15.199 16.098 6.004 1.00 35.16 ATOM 80 O GLY A1274 14.562 17.137 5.815 1.00 36.29 ATOM 81 N LYS A1275 15.282 15.520 7.203 1.00 33.79 ATOM 82 CA LYS A1275 14.571 16.061 8.361 1.00 33.44 ATOM 83 C LYS A1275 15.239 17.349 8.847 1.00 32.25 ATOM 84 O LYS A1275 16.468 17.437 8.894 1.00 30.53 ATOM 85 CB LYS A1275 14.499 15.038 9.495 1.00 34.66 ATOM 86 CG LYS A1275 13.577 13.866 9.202 1.00 35.64 ATOM 87 CD LYS A1275 13.414 12.972 10.421 1.00 36.69 ATOM 88 CE LYS A1275 12.345 11.912 10.212 1.00 38.26 ATOM 89 NZ LYS A1275 12.764 10.860 9.246 1.00 39.30 ATOM 90 N ASN A1276 14.411 18.335 9.187 1.00 31.29 ATOM 91 CA ASN A1276 14.854 19.636 9.695 1.00 30.66 ATOM 92 C ASN A1276 14.454 19.761 11.153 1.00 30.35 ATOM 93 O ASN A1276 13.415 19.232 11.546 1.00 32.22 ATOM 94 CB ASN A1276 14.190 20.773 8.917 1.00 30.19 ATOM 95 CG ASN A1276 14.755 20.948 7.524 1.00 30.06 ATOM 96 OD1 ASN A1276 15.134 22.052 7.146 1.00 31.68 ATOM 97 ND2 ASN A1276 14.786 19.875 6.744 1.00 30.32 ATOM 98 N PHE A1277 15.249 20.486 11.942 1.00 30.13 ATOM 99 CA PHE A1277 15.020 20.596 13.389 1.00 31.65 ATOM 100 C PHE A1277 15.049 22.022 13.922 1.00 31.89 ATOM 101 O PHE A1277 15.662 22.903 13.333 1.00 30.71 ATOM 102 CB PHE A1277 16.022 19.709 14.129 1.00 31.78 ATOM 103 CG PHE A1277 15.821 18.253 13.853 1.00 31.90 ATOM 104 CD1 PHE A1277 14.937 17.508 14.626 1.00 32.75 ATOM 105 CD2 PHE A1277 16.460 17.635 12.778 1.00 31.73 ATOM 106 CE1 PHE A1277 14.721 16.168 14.359 1.00 33.24 ATOM 107 CE2 PHE A1277 16.242 16.292 12.504 1.00 32.54 ATOM 108 CZ PHE A1277 15.371 15.561 13.296 1.00 33.06 ATOM 109 N PHE A1278 14.371 22.230 15.050 1.00 33.86 ATOM 110 CA PHE A1278 14.192 23.561 15.638 1.00 35.08 ATOM 111 C PHE A1278 15.476 24.129 16.253 1.00 35.07 ATOM 112 O PHE A1278 15.648 25.347 16.317 1.00 34.77 ATOM 113 CB PHE A1278 13.073 23.523 16.688 1.00 36.76 ATOM 114 CG PHE A1278 12.717 24.872 17.246 1.00 38.29 ATOM 115 CD1 PHE A1278 12.007 25.789 16.478 1.00 39.43 ATOM 116 CD2 PHE A1278 13.098 25.233 18.537 1.00 39.64 ATOM 117 CE1 PHE A1278 11.676 27.037 16.986 1.00 40.59 ATOM 118 CE2 PHE A1278 12.770 26.480 19.050 1.00 41.37 ATOM 119 CZ PHE A1278 12.058 27.384 18.273 1.00 41.29 ATOM 120 N SER A1279 16.367 23.252 16.711 1.00 36.16 ATOM 121 CA SER A1279 17.656 23.680 17.254 1.00 36.76 ATOM 122 C SER A1279 18.759 22.684 16.926 1.00 35.46 ATOM 123 O SER A1279 18.493 21.542 16.541 1.00 32.30 ATOM 124 CB SER A1279 17.564 23.870 18.771 1.00 37.47 ATOM 125 OG SER A1279 17.550 22.624 19.451 1.00 39.18 ATOM 126 N HIS A1280 19.996 23.141 17.092 1.00 35.82 ATOM 127 CA HIS A1280 21.175 22.302 16.897 1.00 37.32 ATOM 128 C HIS A1280 21.212 21.128 17.885 1.00 36.74 ATOM 129 O HIS A1280 21.681 20.050 17.533 1.00 35.21 ATOM 130 CB HIS A1280 22.452 23.152 16.980 1.00 39.32 ATOM 131 CG HIS A1280 23.712 22.354 16.887 1.00 42.23 ATOM 132 ND1 HIS A1280 24.436 21.989 18.000 1.00 45.06 ATOM 133 CD2 HIS A1280 24.363 21.827 15.823 1.00 44.62 ATOM 134 CE1 HIS A1280 25.485 21.281 17.627 1.00 45.10 ATOM 135 NE2 HIS A1280 25.465 21.168 16.312 1.00 45.80 ATOM 136 N LYS A1281 20.705 21.338 19.102 1.00 37.85 ATOM 137 CA LYS A1281 20.566 20.264 20.097 1.00 40.11 ATOM 138 C LYS A1281 19.731 19.104 19.550 1.00 39.76 ATOM 139 O LYS A1281 20.156 17.947 19.608 1.00 39.37 ATOM 140 CB LYS A1281 19.932 20.811 21.386 1.00 42.06 ATOM 141 CG LYS A1281 19.875 19.842 22.562 1.00 44.24 ATOM 142 CD LYS A1281 21.262 19.471 23.064 1.00 46.46 ATOM 143 CE LYS A1281 21.208 18.855 24.455 1.00 47.38 ATOM 144 NZ LYS A1281 22.545 18.374 24.904 1.00 49.13 ATOM 145 N TYR A1282 18.554 19.427 19.014 1.00 39.29 ATOM 146 CA TYR A1282 17.664 18.426 18.404 1.00 39.86 ATOM 147 C TYR A1282 18.296 17.706 17.209 1.00 38.06 ATOM 148 O TYR A1282 18.073 16.508 17.016 1.00 36.39 ATOM 149 CB TYR A1282 16.339 19.062 17.966 1.00 41.17 ATOM 150 CG TYR A1282 15.369 19.329 19.096 1.00 42.40 ATOM 151 CD1 TYR A1282 14.813 18.275 19.824 1.00 43.41 ATOM 152 CD2 TYR A1282 14.978 20.629 19.421 1.00 43.32 ATOM 153 CE1 TYR A1282 13.912 18.508 20.854 1.00 44.82 ATOM 154 CE2 TYR A1282 14.077 20.873 20.449 1.00 44.52 ATOM 155 CZ TYR A1282 13.547 19.810 21.162 1.00 45.67 ATOM 156 OH TYR A1282 12.655 20.044 22.182 1.00 51.57 ATOM 157 N LEU A1283 19.067 18.444 16.411 1.00 37.25 ATOM 158 CA LEU A1283 19.777 17.878 15.261 1.00 38.01 ATOM 159 C LEU A1283 20.803 16.821 15.675 1.00 38.64 ATOM 160 O LEU A1283 20.846 15.736 15.092 1.00 38.88 ATOM 161 CB LEU A1283 20.485 18.987 14.482 1.00 37.81 ATOM 162 CG LEU A1283 21.258 18.571 13.229 1.00 38.49 ATOM 163 CD1 LEU A1283 20.304 18.140 12.130 1.00 39.30 ATOM 164 CD2 LEU A1283 22.144 19.714 12.775 1.00 38.90 ATOM 165 N VAL A1284 21.627 17.148 16.669 1.00 40.35 ATOM 166 CA VAL A1284 22.696 16.246 17.133 1.00 42.44 ATOM 167 C VAL A1284 22.112 14.975 17.757 1.00 43.54 ATOM 168 O VAL A1284 22.611 13.874 17.509 1.00 43.84 ATOM 169 CB VAL A1284 23.655 16.955 18.126 1.00 43.52 ATOM 170 CG1 VAL A1284 24.646 15.975 18.755 1.00 44.05 ATOM 171 CG2 VAL A1284 24.413 18.073 17.422 1.00 43.04 ATOM 172 N GLN A1285 21.064 15.136 18.562 1.00 44.45 ATOM 173 CA GLN A1285 20.323 13.999 19.122 1.00 47.23 ATOM 174 C GLN A1285 19.804 13.058 18.034 1.00 48.30 ATOM 175 O GLN A1285 19.887 11.836 18.172 1.00 47.68 ATOM 176 CB GLN A1285 19.141 14.484 19.964 1.00 49.32 ATOM 177 CG GLN A1285 19.534 15.101 21.296 1.00 51.03 ATOM 178 CD GLN A1285 18.362 15.742 22.020 1.00 54.03 ATOM 179 OE1 GLN A1285 17.198 15.542 21.659 1.00 57.29 ATOM 180 NE2 GLN A1285 18.666 16.517 23.054 1.00 55.32 ATOM 181 N HIS A1286 19.276 13.639 16.959 1.00 47.47 ATOM 182 CA HIS A1286 18.696 12.867 15.865 1.00 47.48 ATOM 183 C HIS A1286 19.708 12.040 15.071 1.00 49.18 ATOM 184 O HIS A1286 19.459 10.866 14.804 1.00 48.78 ATOM 185 CB HIS A1286 17.947 13.776 14.895 1.00 46.18 ATOM 186 CG HIS A1286 17.282 13.031 13.785 1.00 44.68 ATOM 187 ND1 HIS A1286 16.229 12.172 14.003 1.00 45.99 ATOM 188 CD2 HIS A1286 17.522 13.006 12.453 1.00 43.82 ATOM 189 CE1 HIS A1286 15.845 11.649 12.853 1.00 46.90 ATOM 190 NE2 HIS A1286 16.613 12.137 11.897 1.00 44.86 ATOM 191 N GLN A1287 20.827 12.650 14.681 1.00 50.65 ATOM 192 CA GLN A1287 21.801 11.980 13.804 1.00 53.37 ATOM 193 C GLN A1287 22.482 10.768 14.460 1.00 55.33 ATOM 194 O GLN A1287 22.915 9.852 13.762 1.00 59.58 ATOM 195 CB GLN A1287 22.839 12.977 13.260 1.00 53.50 ATOM 196 CG GLN A1287 23.901 13.435 14.256 1.00 54.75 ATOM 197 CD GLN A1287 25.149 12.552 14.310 1.00 56.32 ATOM 198 OE1 GLN A1287 25.411 11.750 13.407 1.00 57.04 ATOM 199 NE2 GLN A1287 25.929 12.701 15.380 1.00 55.36 ATOM 200 N ARG A1288 22.567 10.765 15.791 1.00 57.05 ATOM 201 CA ARG A1288 23.067 9.601 16.541 1.00 58.88 ATOM 202 C ARG A1288 22.140 8.373 16.470 1.00 59.82 ATOM 203 O ARG A1288 22.583 7.257 16.749 1.00 63.75 ATOM 204 CB ARG A1288 23.354 9.978 18.001 1.00 60.30 ATOM 205 CG ARG A1288 24.598 10.839 18.155 1.00 61.24 ATOM 206 CD ARG A1288 24.684 11.515 19.515 1.00 62.62 ATOM 207 NE ARG A1288 25.891 12.339 19.624 1.00 64.98 ATOM 208 CZ ARG A1288 26.191 13.142 20.650 1.00 66.03 ATOM 209 NH1 ARG A1288 25.376 13.258 21.699 1.00 66.86 ATOM 210 NH2 ARG A1288 27.325 13.841 20.625 1.00 66.00 ATOM 211 N VAL A1289 20.874 8.580 16.099 1.00 58.96 ATOM 212 CA VAL A1289 19.935 7.477 15.834 1.00 56.78 ATOM 213 C VAL A1289 20.292 6.758 14.525 1.00 55.34 ATOM 214 O VAL A1289 20.131 5.540 14.425 1.00 61.26 ATOM 215 CB VAL A1289 18.460 7.963 15.796 1.00 56.50 ATOM 216 CG1 VAL A1289 17.503 6.810 15.503 1.00 57.10 ATOM 217 CG2 VAL A1289 18.086 8.638 17.113 1.00 56.79 ATOM 218 N HIS A1290 20.767 7.509 13.530 1.00 50.15 ATOM 219 CA HIS A1290 21.263 6.923 12.274 1.00 49.93 ATOM 220 C HIS A1290 22.525 6.069 12.451 1.00 48.27 ATOM 221 O HIS A1290 22.757 5.143 11.671 1.00 49.75 ATOM 222 CB HIS A1290 21.524 8.015 11.226 1.00 50.17 ATOM 223 CG HIS A1290 20.276 8.591 10.638 1.00 50.23 ATOM 224 ND1 HIS A1290 19.886 8.346 9.340 1.00 49.26 ATOM 225 CD2 HIS A1290 19.317 9.379 11.177 1.00 53.10 ATOM 226 CE1 HIS A1290 18.746 8.968 9.100 1.00 51.21 ATOM 227 NE2 HIS A1290 18.379 9.601 10.199 1.00 52.76 ATOM 228 N SER A1291 23.332 6.389 13.461 1.00 46.96 ATOM 229 CA SER A1291 24.566 5.656 13.741 1.00 46.60 ATOM 230 C SER A1291 24.296 4.273 14.341 1.00 45.05 ATOM 231 O SER A1291 23.574 4.150 15.333 1.00 44.76 ATOM 232 CB SER A1291 25.452 6.457 14.700 1.00 46.48 ATOM 233 OG SER A1291 26.685 5.794 14.933 1.00 46.03 ATOM 234 N ASP A1292 24.881 3.246 13.726 1.00 43.35 ATOM 235 CA ASP A1292 24.951 1.900 14.317 1.00 43.47 ATOM 236 C ASP A1292 26.399 1.543 14.718 1.00 39.77 ATOM 237 O ASP A1292 26.749 0.364 14.831 1.00 39.11 ATOM 238 CB ASP A1292 24.340 0.847 13.369 1.00 46.53 ATOM 239 CG ASP A1292 25.074 0.738 12.034 1.00 50.65 ATOM 240 OD1 ASP A1292 25.084 -0.367 11.451 1.00 55.24 ATOM 241 OD2 ASP A1292 25.630 1.755 11.566 1.00 57.90 ATOM 242 N ASP A1293 27.218 2.569 14.960 1.00 34.61 ATOM 243 CA ASP A1293 28.618 2.398 15.332 1.00 33.51 ATOM 244 C ASP A1293 28.682 2.008 16.805 1.00 32.31 ATOM 245 O ASP A1293 28.187 2.738 17.659 1.00 29.82 ATOM 246 CB ASP A1293 29.381 3.710 15.092 1.00 33.57 ATOM 247 CG ASP A1293 30.889 3.593 15.326 1.00 32.53 ATOM 248 OD1 ASP A1293 31.420 2.480 15.523 1.00 31.36 ATOM 249 OD2 ASP A1293 31.560 4.644 15.294 1.00 30.83 ATOM 250 ZN ZN A1401 27.186 21.682 14.441 1.00 40.36 ATOM 251 ZN ZN A1402 18.322 12.198 9.731 1.00 41.81 TER