HEADER DNA BINDING PROTEIN 31-DEC-69 6A59 TITLE Structure of histone demethylase REF6 at 1.8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 FRAGMENT: Ig gamma-1 chain C ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.82 ANGSTORMS DBREF 6A59 A 1223 1360 UNP Q9STM3 REF6_ARATH 1223 1360 SEQRES 1 A 30 ARG PRO LEU LYS CYS PRO TRP LYS GLY CYS LYS MET THR SEQRES 2 A 30 PHE LYS TRP ALA TRP SER ARG THR GLU HIS ILE ARG VAL SEQRES 3 A 30 HIS THR GLY ALA ATOM 1 N ARG A1294 29.273 0.846 17.080 1.00 31.91 ATOM 2 CA ARG A1294 29.489 0.355 18.442 1.00 32.33 ATOM 3 C ARG A1294 30.989 0.088 18.591 1.00 29.79 ATOM 4 O ARG A1294 31.441 -1.036 18.368 1.00 28.93 ATOM 5 CB ARG A1294 28.646 -0.901 18.693 1.00 34.58 ATOM 6 CG ARG A1294 27.149 -0.626 18.639 1.00 36.84 ATOM 7 CD ARG A1294 26.323 -1.757 19.230 1.00 39.09 ATOM 8 NE ARG A1294 26.460 -3.000 18.472 1.00 43.01 ATOM 9 CZ ARG A1294 25.887 -3.260 17.292 1.00 45.81 ATOM 10 NH1 ARG A1294 25.114 -2.361 16.676 1.00 47.54 ATOM 11 NH2 ARG A1294 26.097 -4.440 16.710 1.00 47.95 ATOM 12 N PRO A1295 31.776 1.133 18.936 1.00 28.41 ATOM 13 CA PRO A1295 33.242 1.021 18.849 1.00 28.70 ATOM 14 C PRO A1295 33.938 0.120 19.877 1.00 28.60 ATOM 15 O PRO A1295 35.085 -0.268 19.651 1.00 28.85 ATOM 16 CB PRO A1295 33.729 2.472 19.037 1.00 28.48 ATOM 17 CG PRO A1295 32.520 3.334 18.982 1.00 29.18 ATOM 18 CD PRO A1295 31.364 2.477 19.384 1.00 29.29 ATOM 19 N LEU A1296 33.270 -0.193 20.987 1.00 28.07 ATOM 20 CA LEU A1296 33.910 -0.860 22.121 1.00 28.50 ATOM 21 C LEU A1296 33.586 -2.350 22.138 1.00 28.32 ATOM 22 O LEU A1296 32.453 -2.734 22.409 1.00 29.14 ATOM 23 CB LEU A1296 33.457 -0.203 23.425 1.00 29.12 ATOM 24 CG LEU A1296 33.669 1.313 23.516 1.00 29.48 ATOM 25 CD1 LEU A1296 33.092 1.832 24.820 1.00 30.31 ATOM 26 CD2 LEU A1296 35.135 1.690 23.384 1.00 29.95 ATOM 27 N LYS A1297 34.589 -3.178 21.851 1.00 28.65 ATOM 28 CA LYS A1297 34.411 -4.632 21.786 1.00 29.98 ATOM 29 C LYS A1297 34.534 -5.257 23.168 1.00 28.83 ATOM 30 O LYS A1297 35.310 -4.783 23.998 1.00 27.84 ATOM 31 CB LYS A1297 35.455 -5.267 20.863 1.00 32.65 ATOM 32 CG LYS A1297 35.458 -4.737 19.436 1.00 35.00 ATOM 33 CD LYS A1297 36.251 -5.659 18.518 1.00 36.61 ATOM 34 CE LYS A1297 36.318 -5.136 17.089 1.00 38.01 ATOM 35 NZ LYS A1297 37.336 -4.062 16.919 1.00 39.32 ATOM 36 N CYS A1298 33.778 -6.328 23.406 1.00 27.62 ATOM 37 CA CYS A1298 33.910 -7.103 24.641 1.00 28.11 ATOM 38 C CYS A1298 35.288 -7.773 24.687 1.00 27.59 ATOM 39 O CYS A1298 35.707 -8.369 23.692 1.00 29.32 ATOM 40 CB CYS A1298 32.821 -8.174 24.733 1.00 28.05 ATOM 41 SG CYS A1298 32.902 -9.166 26.246 1.00 28.19 ATOM 42 N PRO A1299 35.997 -7.682 25.832 1.00 28.12 ATOM 43 CA PRO A1299 37.322 -8.297 25.946 1.00 29.39 ATOM 44 C PRO A1299 37.331 -9.813 26.229 1.00 28.72 ATOM 45 O PRO A1299 38.409 -10.402 26.286 1.00 29.30 ATOM 46 CB PRO A1299 37.940 -7.541 27.125 1.00 29.58 ATOM 47 CG PRO A1299 36.775 -7.262 28.005 1.00 29.61 ATOM 48 CD PRO A1299 35.636 -6.958 27.068 1.00 29.13 ATOM 49 N TRP A1300 36.160 -10.429 26.397 1.00 28.44 ATOM 50 CA TRP A1300 36.056 -11.850 26.737 1.00 29.87 ATOM 51 C TRP A1300 36.230 -12.686 25.470 1.00 30.73 ATOM 52 O TRP A1300 35.459 -12.530 24.526 1.00 29.62 ATOM 53 CB TRP A1300 34.689 -12.126 27.375 1.00 30.37 ATOM 54 CG TRP A1300 34.648 -13.282 28.315 1.00 30.06 ATOM 55 CD1 TRP A1300 34.092 -14.507 28.089 1.00 31.51 ATOM 56 CD2 TRP A1300 35.162 -13.312 29.651 1.00 29.41 ATOM 57 NE1 TRP A1300 34.230 -15.303 29.205 1.00 31.72 ATOM 58 CE2 TRP A1300 34.892 -14.597 30.174 1.00 30.59 ATOM 59 CE3 TRP A1300 35.829 -12.381 30.456 1.00 29.47 ATOM 60 CZ2 TRP A1300 35.256 -14.970 31.473 1.00 30.47 ATOM 61 CZ3 TRP A1300 36.196 -12.753 31.747 1.00 29.66 ATOM 62 CH2 TRP A1300 35.907 -14.039 32.240 1.00 30.40 ATOM 63 N LYS A1301 37.236 -13.563 25.446 1.00 32.31 ATOM 64 CA LYS A1301 37.504 -14.400 24.266 1.00 33.40 ATOM 65 C LYS A1301 36.279 -15.237 23.901 1.00 33.44 ATOM 66 O LYS A1301 35.607 -15.781 24.782 1.00 33.53 ATOM 67 CB LYS A1301 38.713 -15.314 24.486 1.00 34.72 ATOM 68 CG LYS A1301 40.048 -14.584 24.534 1.00 36.19 ATOM 69 CD LYS A1301 41.223 -15.505 24.235 1.00 38.22 ATOM 70 CE LYS A1301 41.352 -16.630 25.244 1.00 39.01 ATOM 71 NZ LYS A1301 42.599 -17.425 25.044 1.00 39.68 ATOM 72 N GLY A1302 35.980 -15.300 22.603 1.00 33.65 ATOM 73 CA GLY A1302 34.780 -15.970 22.100 1.00 35.23 ATOM 74 C GLY A1302 33.568 -15.068 21.913 1.00 36.31 ATOM 75 O GLY A1302 32.719 -15.357 21.071 1.00 39.16 ATOM 76 N CYS A1303 33.478 -13.983 22.691 1.00 36.55 ATOM 77 CA CYS A1303 32.338 -13.065 22.627 1.00 34.40 ATOM 78 C CYS A1303 32.539 -12.020 21.529 1.00 34.63 ATOM 79 O CYS A1303 33.595 -11.391 21.446 1.00 33.91 ATOM 80 CB CYS A1303 32.132 -12.366 23.969 1.00 33.42 ATOM 81 SG CYS A1303 30.654 -11.331 24.020 1.00 32.29 ATOM 82 N LYS A1304 31.511 -11.839 20.704 1.00 35.42 ATOM 83 CA LYS A1304 31.563 -10.938 19.552 1.00 37.23 ATOM 84 C LYS A1304 30.745 -9.660 19.774 1.00 36.26 ATOM 85 O LYS A1304 30.581 -8.866 18.847 1.00 37.08 ATOM 86 CB LYS A1304 31.058 -11.672 18.304 1.00 39.52 ATOM 87 CG LYS A1304 31.828 -12.942 17.969 1.00 41.70 ATOM 88 CD LYS A1304 31.255 -13.636 16.743 1.00 43.34 ATOM 89 CE LYS A1304 31.961 -14.956 16.473 1.00 44.55 ATOM 90 NZ LYS A1304 31.486 -15.597 15.215 1.00 45.57 ATOM 91 N MET A1305 30.251 -9.447 20.995 1.00 34.72 ATOM 92 CA MET A1305 29.389 -8.302 21.279 1.00 36.27 ATOM 93 C MET A1305 30.178 -6.995 21.319 1.00 33.93 ATOM 94 O MET A1305 31.338 -6.966 21.733 1.00 30.38 ATOM 95 CB MET A1305 28.620 -8.495 22.586 1.00 38.60 ATOM 96 CG MET A1305 27.563 -9.590 22.511 1.00 43.20 ATOM 97 SD MET A1305 26.189 -9.326 23.642 1.00 51.24 ATOM 98 CE MET A1305 25.350 -7.950 22.860 1.00 46.69 ATOM 99 N THR A1306 29.522 -5.928 20.875 1.00 32.88 ATOM 100 CA THR A1306 30.112 -4.592 20.793 1.00 32.30 ATOM 101 C THR A1306 29.159 -3.580 21.418 1.00 30.91 ATOM 102 O THR A1306 27.955 -3.832 21.517 1.00 30.61 ATOM 103 CB THR A1306 30.382 -4.202 19.335 1.00 32.67 ATOM 104 OG1 THR A1306 29.184 -4.371 18.568 1.00 32.83 ATOM 105 CG2 THR A1306 31.484 -5.065 18.746 1.00 33.67 ATOM 106 N PHE A1307 29.707 -2.442 21.847 1.00 30.29 ATOM 107 CA PHE A1307 28.957 -1.453 22.630 1.00 31.24 ATOM 108 C PHE A1307 29.283 -0.018 22.237 1.00 31.49 ATOM 109 O PHE A1307 30.381 0.274 21.764 1.00 28.38 ATOM 110 CB PHE A1307 29.235 -1.662 24.119 1.00 31.47 ATOM 111 CG PHE A1307 28.904 -3.044 24.581 1.00 30.79 ATOM 112 CD1 PHE A1307 27.606 -3.363 24.953 1.00 33.25 ATOM 113 CD2 PHE A1307 29.865 -4.047 24.560 1.00 31.48 ATOM 114 CE1 PHE A1307 27.278 -4.649 25.343 1.00 33.14 ATOM 115 CE2 PHE A1307 29.543 -5.340 24.945 1.00 32.31 ATOM 116 CZ PHE A1307 28.247 -5.636 25.334 1.00 33.04 ATOM 117 N LYS A1308 28.310 0.866 22.443 1.00 32.95 ATOM 118 CA LYS A1308 28.484 2.297 22.213 1.00 35.35 ATOM 119 C LYS A1308 29.161 2.967 23.409 1.00 35.33 ATOM 120 O LYS A1308 30.065 3.779 23.225 1.00 36.85 ATOM 121 CB LYS A1308 27.126 2.958 21.931 1.00 37.25 ATOM 122 CG LYS A1308 27.180 4.435 21.554 0.50 38.03 ATOM 123 CD LYS A1308 28.124 4.703 20.394 0.50 38.77 ATOM 124 CE LYS A1308 27.657 5.878 19.557 0.50 40.00 ATOM 125 NZ LYS A1308 28.403 5.948 18.275 1.00 41.91 ATOM 126 N TRP A1309 28.719 2.624 24.620 1.00 35.80 ATOM 127 CA TRP A1309 29.184 3.269 25.852 1.00 38.01 ATOM 128 C TRP A1309 29.970 2.295 26.727 1.00 36.51 ATOM 129 O TRP A1309 29.656 1.102 26.784 1.00 34.85 ATOM 130 CB TRP A1309 27.993 3.822 26.643 1.00 40.81 ATOM 131 CG TRP A1309 26.991 4.553 25.799 1.00 43.63 ATOM 132 CD1 TRP A1309 25.690 4.198 25.579 1.00 45.43 ATOM 133 CD2 TRP A1309 27.213 5.752 25.049 1.00 46.28 ATOM 134 NE1 TRP A1309 25.085 5.107 24.743 1.00 47.24 ATOM 135 CE2 TRP A1309 25.996 6.072 24.403 1.00 47.69 ATOM 136 CE3 TRP A1309 28.322 6.591 24.860 1.00 47.95 ATOM 137 CZ2 TRP A1309 25.856 7.198 23.578 1.00 49.24 ATOM 138 CZ3 TRP A1309 28.182 7.715 24.038 1.00 48.92 ATOM 139 CH2 TRP A1309 26.956 8.005 23.409 1.00 49.45 ATOM 140 N ALA A1310 30.978 2.821 27.420 1.00 36.17 ATOM 141 CA ALA A1310 31.834 2.020 28.300 1.00 36.01 ATOM 142 C ALA A1310 31.058 1.372 29.448 1.00 35.49 ATOM 143 O ALA A1310 31.357 0.238 29.822 1.00 33.03 ATOM 144 CB ALA A1310 32.977 2.864 28.848 1.00 37.29 ATOM 145 N TRP A1311 30.068 2.081 29.995 1.00 37.15 ATOM 146 CA TRP A1311 29.235 1.536 31.079 1.00 37.76 ATOM 147 C TRP A1311 28.454 0.288 30.647 1.00 36.75 ATOM 148 O TRP A1311 28.312 -0.652 31.431 1.00 36.91 ATOM 149 CB TRP A1311 28.296 2.609 31.674 1.00 39.09 ATOM 150 CG TRP A1311 27.146 3.050 30.796 1.00 39.69 ATOM 151 CD1 TRP A1311 27.103 4.158 29.995 1.00 40.55 ATOM 152 CD2 TRP A1311 25.872 2.406 30.655 1.00 41.43 ATOM 153 NE1 TRP A1311 25.890 4.235 29.355 1.00 40.96 ATOM 154 CE2 TRP A1311 25.115 3.173 29.739 1.00 42.43 ATOM 155 CE3 TRP A1311 25.299 1.247 31.202 1.00 42.54 ATOM 156 CZ2 TRP A1311 23.811 2.821 29.360 1.00 44.42 ATOM 157 CZ3 TRP A1311 24.000 0.895 30.823 1.00 43.88 ATOM 158 CH2 TRP A1311 23.272 1.684 29.910 1.00 44.52 ATOM 159 N SER A1312 27.965 0.283 29.405 1.00 35.44 ATOM 160 CA SER A1312 27.256 -0.869 28.843 1.00 35.36 ATOM 161 C SER A1312 28.178 -2.080 28.712 1.00 33.52 ATOM 162 O SER A1312 27.782 -3.201 29.044 1.00 33.27 ATOM 163 CB SER A1312 26.659 -0.531 27.473 1.00 36.41 ATOM 164 OG SER A1312 25.817 0.605 27.552 1.00 40.91 ATOM 165 N ARG A1313 29.401 -1.848 28.232 1.00 31.60 ATOM 166 CA ARG A1313 30.402 -2.913 28.124 1.00 31.25 ATOM 167 C ARG A1313 30.770 -3.468 29.497 1.00 31.26 ATOM 168 O ARG A1313 30.811 -4.679 29.677 1.00 30.19 ATOM 169 CB ARG A1313 31.667 -2.429 27.404 1.00 30.92 ATOM 170 CG ARG A1313 32.761 -3.485 27.328 1.00 31.13 ATOM 171 CD ARG A1313 33.852 -3.128 26.340 1.00 31.14 ATOM 172 NE ARG A1313 34.631 -1.965 26.759 1.00 31.50 ATOM 173 CZ ARG A1313 35.702 -1.495 26.118 1.00 32.46 ATOM 174 NH1 ARG A1313 36.147 -2.078 25.003 1.00 33.10 ATOM 175 NH2 ARG A1313 36.334 -0.423 26.590 1.00 33.33 ATOM 176 N THR A1314 31.041 -2.578 30.451 1.00 31.52 ATOM 177 CA THR A1314 31.387 -2.984 31.819 1.00 32.12 ATOM 178 C THR A1314 30.278 -3.817 32.466 1.00 31.70 ATOM 179 O THR A1314 30.560 -4.836 33.099 1.00 32.42 ATOM 180 CB THR A1314 31.717 -1.763 32.703 1.00 32.66 ATOM 181 OG1 THR A1314 32.835 -1.066 32.143 1.00 32.26 ATOM 182 CG2 THR A1314 32.065 -2.188 34.131 1.00 33.24 ATOM 183 N GLU A1315 29.028 -3.386 32.306 1.00 32.07 ATOM 184 CA GLU A1315 27.884 -4.165 32.790 1.00 33.74 ATOM 185 C GLU A1315 27.807 -5.531 32.110 1.00 33.52 ATOM 186 O GLU A1315 27.586 -6.543 32.780 1.00 34.00 ATOM 187 CB GLU A1315 26.566 -3.394 32.620 1.00 35.19 ATOM 188 CG GLU A1315 26.372 -2.311 33.675 1.00 36.86 ATOM 189 CD GLU A1315 25.005 -1.649 33.640 1.00 39.82 ATOM 190 OE1 GLU A1315 24.176 -1.968 32.758 1.00 41.95 ATOM 191 OE2 GLU A1315 24.758 -0.792 34.513 1.00 45.20 ATOM 192 N HIS A1316 28.019 -5.563 30.795 1.00 31.18 ATOM 193 CA HIS A1316 27.976 -6.821 30.048 1.00 30.95 ATOM 194 C HIS A1316 29.004 -7.845 30.510 1.00 28.48 ATOM 195 O HIS A1316 28.694 -9.035 30.586 1.00 29.39 ATOM 196 CB HIS A1316 28.184 -6.599 28.558 1.00 31.92 ATOM 197 CG HIS A1316 28.190 -7.871 27.773 1.00 32.96 ATOM 198 ND1 HIS A1316 27.059 -8.637 27.608 1.00 35.07 ATOM 199 CD2 HIS A1316 29.187 -8.527 27.134 1.00 33.18 ATOM 200 CE1 HIS A1316 27.351 -9.701 26.888 1.00 35.42 ATOM 201 NE2 HIS A1316 28.634 -9.658 26.584 1.00 34.28 ATOM 202 N ILE A1317 30.218 -7.384 30.804 1.00 26.10 ATOM 203 CA ILE A1317 31.308 -8.276 31.238 1.00 27.01 ATOM 204 C ILE A1317 30.933 -9.066 32.506 1.00 27.11 ATOM 205 O ILE A1317 31.386 -10.199 32.682 1.00 26.63 ATOM 206 CB ILE A1317 32.640 -7.501 31.409 1.00 27.20 ATOM 207 CG1 ILE A1317 33.146 -7.018 30.039 1.00 27.28 ATOM 208 CG2 ILE A1317 33.720 -8.361 32.065 1.00 28.04 ATOM 209 CD1 ILE A1317 34.073 -5.824 30.109 1.00 27.68 ATOM 210 N ARG A1318 30.084 -8.484 33.359 1.00 26.58 ATOM 211 CA ARG A1318 29.561 -9.181 34.548 1.00 26.78 ATOM 212 C ARG A1318 28.814 -10.476 34.227 1.00 26.31 ATOM 213 O ARG A1318 28.813 -11.391 35.043 1.00 26.77 ATOM 214 CB ARG A1318 28.642 -8.275 35.372 1.00 26.49 ATOM 215 CG ARG A1318 29.359 -7.097 36.002 1.00 26.34 ATOM 216 CD ARG A1318 28.384 -6.120 36.620 1.00 26.43 ATOM 217 NE ARG A1318 29.034 -4.846 36.914 1.00 26.59 ATOM 218 CZ ARG A1318 28.397 -3.698 37.156 1.00 27.27 ATOM 219 NH1 ARG A1318 27.066 -3.627 37.153 1.00 27.09 ATOM 220 NH2 ARG A1318 29.107 -2.600 37.403 1.00 28.82 ATOM 221 N VAL A1319 28.186 -10.545 33.052 1.00 27.08 ATOM 222 CA VAL A1319 27.504 -11.767 32.597 1.00 28.38 ATOM 223 C VAL A1319 28.518 -12.910 32.477 1.00 28.54 ATOM 224 O VAL A1319 28.232 -14.045 32.853 1.00 30.60 ATOM 225 CB VAL A1319 26.773 -11.567 31.241 1.00 29.59 ATOM 226 CG1 VAL A1319 26.129 -12.870 30.765 1.00 30.65 ATOM 227 CG2 VAL A1319 25.720 -10.472 31.345 1.00 29.81 ATOM 228 N HIS A1320 29.699 -12.588 31.960 1.00 27.88 ATOM 229 CA HIS A1320 30.790 -13.550 31.818 1.00 28.70 ATOM 230 C HIS A1320 31.458 -13.927 33.145 1.00 28.50 ATOM 231 O HIS A1320 31.751 -15.100 33.373 1.00 28.29 ATOM 232 CB HIS A1320 31.840 -13.015 30.841 1.00 29.77 ATOM 233 CG HIS A1320 31.356 -12.938 29.430 1.00 31.58 ATOM 234 ND1 HIS A1320 30.883 -14.041 28.758 1.00 33.53 ATOM 235 CD2 HIS A1320 31.264 -11.902 28.563 1.00 32.76 ATOM 236 CE1 HIS A1320 30.517 -13.694 27.540 1.00 34.67 ATOM 237 NE2 HIS A1320 30.736 -12.402 27.394 1.00 33.77 ATOM 238 N THR A1321 31.705 -12.939 34.005 1.00 27.99 ATOM 239 CA THR A1321 32.356 -13.188 35.300 1.00 27.90 ATOM 240 C THR A1321 31.395 -13.738 36.355 1.00 27.79 ATOM 241 O THR A1321 31.838 -14.317 37.345 1.00 30.47 ATOM 242 CB THR A1321 33.011 -11.916 35.875 1.00 28.03 ATOM 243 OG1 THR A1321 31.997 -10.955 36.194 1.00 27.69 ATOM 244 CG2 THR A1321 34.014 -11.317 34.889 1.00 28.55 ATOM 245 N GLY A1322 30.092 -13.539 36.155 1.00 26.27 ATOM 246 CA GLY A1322 29.084 -13.931 37.136 1.00 27.65 ATOM 247 C GLY A1322 29.005 -12.998 38.335 1.00 28.60 ATOM 248 O GLY A1322 28.415 -13.356 39.352 1.00 28.48 ATOM 249 N ALA A1323 29.576 -11.797 38.213 1.00 28.53 ATOM 250 CA ALA A1323 29.591 -10.829 39.308 1.00 28.11 ATOM 251 C ALA A1323 28.194 -10.260 39.512 1.00 26.75 ATOM 252 O ALA A1323 27.519 -9.917 38.548 1.00 25.34 ATOM 253 CB ALA A1323 30.573 -9.708 39.015 1.00 28.81 ATOM 254 ZN ZN A1403 31.094 -10.387 26.019 1.00 41.16 TER