HEADER DNA BINDING PROTEIN 31-DEC-69 6A59 TITLE Structure of histone demethylase REF6 at 1.8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 FRAGMENT: Ig gamma-1 chain C ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.82 ANGSTORMS DBREF 6A59 A 1223 1360 UNP Q9STM3 REF6_ARATH 1223 1360 SEQRES 1 A 26 CYS ALA ALA TYR GLN CYS ASN MET GLU GLY CYS THR MET SEQRES 2 A 26 SER PHE SER SER GLU LYS GLN LEU MET LEU HIS LYS ARG ATOM 1 N CYS A1240 42.820 21.262 7.395 1.00 64.39 ATOM 2 CA CYS A1240 42.669 20.558 6.082 1.00 63.69 ATOM 3 C CYS A1240 41.537 21.192 5.243 1.00 61.26 ATOM 4 O CYS A1240 41.150 22.339 5.495 1.00 60.77 ATOM 5 CB CYS A1240 42.453 19.053 6.319 1.00 65.20 ATOM 6 SG CYS A1240 40.853 18.616 7.038 1.00 72.28 ATOM 7 N ALA A1241 41.032 20.465 4.244 1.00 59.20 ATOM 8 CA ALA A1241 39.922 20.936 3.402 1.00 55.92 ATOM 9 C ALA A1241 38.542 20.949 4.084 1.00 52.64 ATOM 10 O ALA A1241 37.612 21.562 3.555 1.00 53.12 ATOM 11 CB ALA A1241 39.856 20.106 2.126 1.00 56.10 ATOM 12 N ALA A1242 38.403 20.277 5.230 1.00 49.92 ATOM 13 CA ALA A1242 37.111 20.159 5.923 1.00 47.26 ATOM 14 C ALA A1242 36.607 21.488 6.495 1.00 44.65 ATOM 15 O ALA A1242 37.398 22.353 6.874 1.00 44.60 ATOM 16 CB ALA A1242 37.198 19.118 7.032 1.00 47.52 ATOM 17 N TYR A1243 35.282 21.624 6.545 1.00 41.83 ATOM 18 CA TYR A1243 34.607 22.798 7.102 1.00 40.69 ATOM 19 C TYR A1243 33.985 22.419 8.445 1.00 37.74 ATOM 20 O TYR A1243 32.993 21.694 8.485 1.00 36.14 ATOM 21 CB TYR A1243 33.520 23.290 6.141 1.00 41.69 ATOM 22 CG TYR A1243 34.056 23.910 4.870 1.00 42.86 ATOM 23 CD1 TYR A1243 34.135 25.297 4.727 1.00 44.35 ATOM 24 CD2 TYR A1243 34.487 23.113 3.809 1.00 43.59 ATOM 25 CE1 TYR A1243 34.627 25.871 3.562 1.00 45.72 ATOM 26 CE2 TYR A1243 34.982 23.678 2.640 1.00 44.87 ATOM 27 CZ TYR A1243 35.049 25.056 2.522 1.00 46.09 ATOM 28 OH TYR A1243 35.538 25.620 1.367 1.00 53.03 ATOM 29 N GLN A1244 34.569 22.916 9.533 1.00 36.85 ATOM 30 CA GLN A1244 34.139 22.561 10.892 1.00 36.46 ATOM 31 C GLN A1244 32.962 23.434 11.336 1.00 35.05 ATOM 32 O GLN A1244 32.912 24.618 11.003 1.00 33.73 ATOM 33 CB GLN A1244 35.302 22.722 11.883 1.00 37.33 ATOM 34 CG GLN A1244 36.440 21.717 11.714 1.00 37.94 ATOM 35 CD GLN A1244 37.447 22.066 10.619 1.00 38.83 ATOM 36 OE1 GLN A1244 37.553 23.218 10.183 1.00 40.45 ATOM 37 NE2 GLN A1244 38.203 21.062 10.174 1.00 38.52 ATOM 38 N CYS A1245 32.021 22.847 12.081 1.00 33.65 ATOM 39 CA CYS A1245 30.914 23.605 12.682 1.00 34.00 ATOM 40 C CYS A1245 31.388 24.371 13.913 1.00 34.60 ATOM 41 O CYS A1245 32.097 23.814 14.755 1.00 32.46 ATOM 42 CB CYS A1245 29.759 22.686 13.083 1.00 33.11 ATOM 43 SG CYS A1245 28.364 23.567 13.838 1.00 31.87 ATOM 44 N ASN A1246 30.968 25.634 14.016 1.00 36.18 ATOM 45 CA ASN A1246 31.370 26.522 15.117 1.00 37.91 ATOM 46 C ASN A1246 30.355 26.633 16.265 1.00 39.04 ATOM 47 O ASN A1246 30.555 27.432 17.184 1.00 40.96 ATOM 48 CB ASN A1246 31.729 27.923 14.578 1.00 39.17 ATOM 49 CG ASN A1246 30.529 28.691 14.042 1.00 40.52 ATOM 50 OD1 ASN A1246 29.471 28.121 13.766 1.00 38.58 ATOM 51 ND2 ASN A1246 30.700 29.997 13.876 1.00 42.89 ATOM 52 N MET A1247 29.279 25.844 16.215 1.00 39.18 ATOM 53 CA MET A1247 28.290 25.822 17.296 1.00 41.52 ATOM 54 C MET A1247 28.909 25.222 18.551 1.00 41.17 ATOM 55 O MET A1247 29.721 24.296 18.466 1.00 36.39 ATOM 56 CB MET A1247 27.046 25.023 16.897 1.00 43.25 ATOM 57 CG MET A1247 26.208 25.648 15.792 1.00 45.46 ATOM 58 SD MET A1247 25.253 27.082 16.336 1.00 51.34 ATOM 59 CE MET A1247 26.272 28.431 15.742 1.00 49.68 ATOM 60 N GLU A1248 28.524 25.757 19.709 1.00 41.89 ATOM 61 CA GLU A1248 29.099 25.343 20.990 1.00 43.05 ATOM 62 C GLU A1248 28.856 23.849 21.226 1.00 40.48 ATOM 63 O GLU A1248 27.719 23.381 21.154 1.00 41.18 ATOM 64 CB GLU A1248 28.512 26.178 22.141 1.00 45.11 ATOM 65 CG GLU A1248 29.128 25.933 23.517 1.00 47.76 ATOM 66 CD GLU A1248 30.634 26.158 23.563 1.00 49.01 ATOM 67 OE1 GLU A1248 31.131 27.083 22.885 1.00 57.40 ATOM 68 OE2 GLU A1248 31.326 25.410 24.287 1.00 59.54 ATOM 69 N GLY A1249 29.937 23.108 21.462 1.00 37.87 ATOM 70 CA GLY A1249 29.866 21.668 21.708 1.00 38.27 ATOM 71 C GLY A1249 29.886 20.767 20.479 1.00 37.72 ATOM 72 O GLY A1249 30.082 19.559 20.616 1.00 36.79 ATOM 73 N CYS A1250 29.700 21.330 19.282 1.00 35.86 ATOM 74 CA CYS A1250 29.611 20.518 18.065 1.00 32.66 ATOM 75 C CYS A1250 30.989 20.079 17.594 1.00 31.82 ATOM 76 O CYS A1250 31.937 20.870 17.602 1.00 30.72 ATOM 77 CB CYS A1250 28.921 21.280 16.935 1.00 31.55 ATOM 78 SG CYS A1250 28.400 20.187 15.589 1.00 30.89 ATOM 79 N THR A1251 31.089 18.819 17.177 1.00 30.35 ATOM 80 CA THR A1251 32.345 18.253 16.686 1.00 31.03 ATOM 81 C THR A1251 32.232 17.778 15.234 1.00 30.52 ATOM 82 O THR A1251 33.106 17.060 14.753 1.00 31.45 ATOM 83 CB THR A1251 32.809 17.090 17.586 1.00 31.77 ATOM 84 OG1 THR A1251 31.823 16.050 17.583 1.00 31.17 ATOM 85 CG2 THR A1251 33.031 17.576 19.016 1.00 33.05 ATOM 86 N MET A1252 31.181 18.199 14.531 1.00 30.15 ATOM 87 CA MET A1252 30.963 17.778 13.146 1.00 30.17 ATOM 88 C MET A1252 31.753 18.634 12.164 1.00 29.86 ATOM 89 O MET A1252 32.012 19.818 12.415 1.00 30.22 ATOM 90 CB MET A1252 29.482 17.823 12.793 1.00 30.23 ATOM 91 CG MET A1252 28.645 16.915 13.669 1.00 31.94 ATOM 92 SD MET A1252 26.962 16.742 13.072 1.00 33.77 ATOM 93 CE MET A1252 26.138 16.203 14.564 1.00 35.49 ATOM 94 N SER A1253 32.132 18.013 11.050 1.00 28.95 ATOM 95 CA SER A1253 32.807 18.688 9.943 1.00 30.40 ATOM 96 C SER A1253 32.222 18.205 8.620 1.00 30.01 ATOM 97 O SER A1253 31.575 17.156 8.568 1.00 28.18 ATOM 98 CB SER A1253 34.313 18.424 9.986 1.00 32.41 ATOM 99 OG SER A1253 34.589 17.047 9.831 1.00 36.75 ATOM 100 N PHE A1254 32.457 18.984 7.563 1.00 30.89 ATOM 101 CA PHE A1254 31.778 18.809 6.275 1.00 31.15 ATOM 102 C PHE A1254 32.718 19.006 5.093 1.00 32.72 ATOM 103 O PHE A1254 33.717 19.717 5.195 1.00 31.94 ATOM 104 CB PHE A1254 30.585 19.772 6.197 1.00 30.44 ATOM 105 CG PHE A1254 29.580 19.530 7.276 1.00 29.08 ATOM 106 CD1 PHE A1254 28.610 18.551 7.117 1.00 29.55 ATOM 107 CD2 PHE A1254 29.657 20.210 8.489 1.00 29.10 ATOM 108 CE1 PHE A1254 27.707 18.278 8.125 1.00 29.84 ATOM 109 CE2 PHE A1254 28.756 19.938 9.506 1.00 29.01 ATOM 110 CZ PHE A1254 27.781 18.968 9.322 1.00 29.07 ATOM 111 N SER A1255 32.380 18.359 3.979 1.00 35.01 ATOM 112 CA SER A1255 33.199 18.393 2.761 1.00 37.63 ATOM 113 C SER A1255 33.218 19.764 2.077 1.00 39.02 ATOM 114 O SER A1255 34.201 20.115 1.421 1.00 44.43 ATOM 115 CB SER A1255 32.702 17.340 1.764 1.00 39.31 ATOM 116 OG SER A1255 32.655 16.048 2.353 1.00 43.84 ATOM 117 N SER A1256 32.137 20.527 2.234 1.00 38.58 ATOM 118 CA SER A1256 31.963 21.803 1.544 1.00 39.16 ATOM 119 C SER A1256 31.251 22.823 2.422 1.00 38.64 ATOM 120 O SER A1256 30.611 22.462 3.413 1.00 37.55 ATOM 121 CB SER A1256 31.145 21.577 0.275 1.00 40.07 ATOM 122 OG SER A1256 29.876 21.021 0.588 1.00 40.73 ATOM 123 N GLU A1257 31.357 24.095 2.040 1.00 39.06 ATOM 124 CA GLU A1257 30.629 25.172 2.717 1.00 39.17 ATOM 125 C GLU A1257 29.114 25.001 2.579 1.00 37.13 ATOM 126 O GLU A1257 28.372 25.358 3.490 1.00 34.42 ATOM 127 CB GLU A1257 31.043 26.547 2.179 1.00 40.77 ATOM 128 CG GLU A1257 30.494 27.717 2.990 1.00 42.21 ATOM 129 CD GLU A1257 30.968 29.074 2.501 1.00 44.85 ATOM 130 OE1 GLU A1257 31.346 29.201 1.316 1.00 50.56 ATOM 131 OE2 GLU A1257 30.951 30.026 3.309 1.00 45.99 ATOM 132 N LYS A1258 28.675 24.470 1.436 1.00 36.26 ATOM 133 CA LYS A1258 27.262 24.164 1.185 1.00 35.31 ATOM 134 C LYS A1258 26.677 23.300 2.293 1.00 33.72 ATOM 135 O LYS A1258 25.659 23.648 2.887 1.00 30.32 ATOM 136 CB LYS A1258 27.100 23.448 -0.159 1.00 36.92 ATOM 137 CG LYS A1258 25.661 23.211 -0.594 1.00 38.25 ATOM 138 CD LYS A1258 25.624 22.563 -1.971 1.00 40.03 ATOM 139 CE LYS A1258 24.219 22.505 -2.541 1.00 41.67 ATOM 140 NZ LYS A1258 23.704 23.836 -2.977 1.00 42.79 ATOM 141 N GLN A1259 27.334 22.178 2.571 1.00 32.89 ATOM 142 CA GLN A1259 26.845 21.240 3.583 1.00 32.17 ATOM 143 C GLN A1259 26.953 21.806 5.000 1.00 30.17 ATOM 144 O GLN A1259 26.117 21.500 5.849 1.00 28.70 ATOM 145 CB GLN A1259 27.559 19.889 3.464 1.00 32.98 ATOM 146 CG GLN A1259 27.302 19.165 2.145 1.00 33.91 ATOM 147 CD GLN A1259 25.828 18.890 1.880 1.00 34.77 ATOM 148 OE1 GLN A1259 25.043 18.680 2.805 1.00 36.69 ATOM 149 NE2 GLN A1259 25.444 18.894 0.606 1.00 36.73 ATOM 150 N LEU A1260 27.960 22.644 5.245 1.00 29.39 ATOM 151 CA LEU A1260 28.064 23.375 6.515 1.00 30.25 ATOM 152 C LEU A1260 26.903 24.352 6.686 1.00 29.67 ATOM 153 O LEU A1260 26.344 24.466 7.776 1.00 28.56 ATOM 154 CB LEU A1260 29.399 24.129 6.618 1.00 30.85 ATOM 155 CG LEU A1260 29.620 25.001 7.864 1.00 31.42 ATOM 156 CD1 LEU A1260 29.543 24.171 9.136 1.00 31.37 ATOM 157 CD2 LEU A1260 30.946 25.743 7.794 1.00 32.36 ATOM 158 N MET A1261 26.554 25.066 5.617 1.00 29.48 ATOM 159 CA MET A1261 25.415 25.988 5.659 1.00 31.27 ATOM 160 C MET A1261 24.110 25.245 5.940 1.00 30.05 ATOM 161 O MET A1261 23.317 25.683 6.773 1.00 30.31 ATOM 162 CB MET A1261 25.303 26.789 4.360 1.00 33.14 ATOM 163 CG MET A1261 26.340 27.895 4.236 1.00 35.26 ATOM 164 SD MET A1261 26.092 28.897 2.758 1.00 39.17 ATOM 165 CE MET A1261 26.596 27.780 1.455 1.00 38.28 ATOM 166 N LEU A1262 23.906 24.114 5.265 1.00 28.78 ATOM 167 CA LEU A1262 22.717 23.285 5.491 1.00 29.59 ATOM 168 C LEU A1262 22.688 22.733 6.922 1.00 29.05 ATOM 169 O LEU A1262 21.625 22.656 7.539 1.00 27.97 ATOM 170 CB LEU A1262 22.641 22.147 4.469 1.00 30.36 ATOM 171 CG LEU A1262 22.462 22.560 3.001 1.00 30.80 ATOM 172 CD1 LEU A1262 22.657 21.359 2.087 1.00 31.38 ATOM 173 CD2 LEU A1262 21.105 23.198 2.764 1.00 31.15 ATOM 174 N HIS A1263 23.861 22.381 7.445 1.00 28.07 ATOM 175 CA HIS A1263 24.006 21.986 8.847 1.00 28.83 ATOM 176 C HIS A1263 23.589 23.094 9.815 1.00 28.74 ATOM 177 O HIS A1263 22.901 22.828 10.805 1.00 28.81 ATOM 178 CB HIS A1263 25.448 21.587 9.139 1.00 29.15 ATOM 179 CG HIS A1263 25.649 21.048 10.516 1.00 29.81 ATOM 180 ND1 HIS A1263 24.991 19.927 10.964 1.00 29.82 ATOM 181 CD2 HIS A1263 26.432 21.461 11.540 1.00 29.93 ATOM 182 CE1 HIS A1263 25.359 19.668 12.203 1.00 31.29 ATOM 183 NE2 HIS A1263 26.226 20.586 12.579 1.00 30.61 ATOM 184 N LYS A1264 24.004 24.327 9.530 1.00 29.58 ATOM 185 CA LYS A1264 23.595 25.496 10.334 1.00 31.80 ATOM 186 C LYS A1264 22.082 25.795 10.286 1.00 31.83 ATOM 187 O LYS A1264 21.550 26.418 11.211 1.00 32.35 ATOM 188 CB LYS A1264 24.406 26.734 9.939 1.00 33.44 ATOM 189 CG LYS A1264 25.852 26.670 10.394 1.00 34.96 ATOM 190 CD LYS A1264 26.670 27.814 9.813 1.00 37.23 ATOM 191 CE LYS A1264 27.913 28.103 10.644 1.00 38.73 ATOM 192 NZ LYS A1264 27.581 28.717 11.964 1.00 40.04 ATOM 193 N ARG A1265 21.410 25.345 9.219 1.00 30.61 ATOM 194 CA ARG A1265 19.939 25.374 9.116 0.50 31.32 ATOM 195 C ARG A1265 19.279 24.196 9.851 1.00 30.88 ATOM 196 O ARG A1265 18.067 24.008 9.760 1.00 31.48 ATOM 197 CB ARG A1265 19.484 25.379 7.640 0.50 31.51 ATOM 198 CG ARG A1265 19.334 26.757 7.014 0.50 32.13 ATOM 199 CD ARG A1265 20.530 27.129 6.159 0.50 32.71 ATOM 200 NE ARG A1265 20.150 27.982 5.034 0.50 33.46 ATOM 201 CZ ARG A1265 20.978 28.812 4.410 0.50 32.88 ATOM 202 NH1 ARG A1265 22.239 28.922 4.807 0.50 32.80 ATOM 203 NH2 ARG A1265 20.541 29.542 3.397 0.50 32.77 ATOM 204 ZN ZN A1401 27.186 21.682 14.441 1.00 40.36 TER