HEADER PROTEIN BINDING 31-DEC-69 6C16 TITLE Ubiquitin variant (UbV.Fbl10.1) bound to a human Skp1-Fbl11 fragment TITLE 2 complex. COMPND MOL_ID: 2; COMPND 2 MOLECULE: Lysine-specific demethylase 2A; COMPND 3 CHAIN: C, F; COMPND 4 EC: 1.14.11.27; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.27 ANGSTORMS DBREF 6C16 F 888 932 UNP Q9Y2K7 KDM2A_HUMAN 888 932 SEQRES 1 F 40 GLU SER TRP MET GLN ARG GLU VAL TRP MET SER VAL PHE SEQRES 2 F 40 ARG TYR LEU SER ARG ARG GLU LEU CYS GLU CYS MET ARG SEQRES 3 F 40 VAL CYS LYS THR TRP TYR LYS TRP CYS CYS ASP LYS ARG SEQRES 4 F 40 LEU ATOM 1 N GLU F 890 0.880 13.021 2.187 1.00112.04 ATOM 2 CA GLU F 890 -0.029 12.799 1.069 1.00119.35 ATOM 3 C GLU F 890 0.525 11.742 0.121 1.00121.56 ATOM 4 O GLU F 890 1.189 10.799 0.549 1.00120.05 ATOM 5 CB GLU F 890 -0.280 14.101 0.324 1.00116.21 ATOM 6 N SER F 891 0.236 11.903 -1.169 1.00123.64 ATOM 7 CA SER F 891 0.771 11.036 -2.210 1.00122.00 ATOM 8 C SER F 891 1.573 11.781 -3.264 1.00123.67 ATOM 9 O SER F 891 2.507 11.204 -3.827 1.00118.75 ATOM 10 CB SER F 891 -0.361 10.260 -2.901 1.00119.66 ATOM 11 N TRP F 892 1.234 13.041 -3.550 1.00125.28 ATOM 12 CA TRP F 892 2.044 13.847 -4.456 1.00120.55 ATOM 13 C TRP F 892 3.430 14.123 -3.891 1.00122.87 ATOM 14 O TRP F 892 4.360 14.384 -4.662 1.00121.42 ATOM 15 CB TRP F 892 1.336 15.167 -4.767 1.00114.67 ATOM 16 N MET F 893 3.585 14.083 -2.567 1.00123.66 ATOM 17 CA MET F 893 4.894 14.175 -1.936 1.00121.69 ATOM 18 C MET F 893 5.453 12.816 -1.538 1.00118.65 ATOM 19 O MET F 893 6.664 12.699 -1.323 1.00120.92 ATOM 20 CB MET F 893 4.824 15.088 -0.703 1.00115.47 ATOM 21 CG MET F 893 6.173 15.429 -0.075 1.00105.68 ATOM 22 SD MET F 893 7.353 16.169 -1.224 1.00102.27 ATOM 23 CE MET F 893 6.513 17.688 -1.663 1.00105.22 ATOM 24 N GLN F 894 4.613 11.783 -1.464 1.00114.23 ATOM 25 CA GLN F 894 5.089 10.471 -1.051 1.00114.04 ATOM 26 C GLN F 894 5.697 9.697 -2.209 1.00112.53 ATOM 27 O GLN F 894 6.384 8.696 -1.979 1.00109.50 ATOM 28 CB GLN F 894 3.951 9.659 -0.428 1.00118.94 ATOM 29 N ARG F 895 5.452 10.138 -3.442 1.00116.12 ATOM 30 CA ARG F 895 5.992 9.448 -4.606 1.00111.72 ATOM 31 C ARG F 895 7.480 9.732 -4.757 1.00 98.92 ATOM 32 O ARG F 895 8.295 8.807 -4.852 1.00 99.40 ATOM 33 CB ARG F 895 5.229 9.863 -5.864 1.00115.79 ATOM 34 N GLU F 896 7.851 11.014 -4.775 1.00 97.57 ATOM 35 CA GLU F 896 9.225 11.393 -5.081 1.00105.31 ATOM 36 C GLU F 896 10.198 10.962 -3.989 1.00110.35 ATOM 37 O GLU F 896 11.380 10.741 -4.274 1.00112.77 ATOM 38 CB GLU F 896 9.312 12.903 -5.302 1.00101.22 ATOM 39 N VAL F 897 9.732 10.836 -2.745 1.00107.63 ATOM 40 CA VAL F 897 10.634 10.431 -1.670 1.00104.19 ATOM 41 C VAL F 897 10.994 8.956 -1.800 1.00105.40 ATOM 42 O VAL F 897 12.161 8.574 -1.648 1.00106.20 ATOM 43 CB VAL F 897 10.018 10.750 -0.295 1.00105.05 ATOM 44 CG1 VAL F 897 8.581 10.283 -0.231 1.00111.18 ATOM 45 CG2 VAL F 897 10.827 10.096 0.815 1.00 98.39 ATOM 46 N TRP F 898 10.011 8.105 -2.099 1.00103.90 ATOM 47 CA TRP F 898 10.297 6.681 -2.225 1.00101.32 ATOM 48 C TRP F 898 11.100 6.389 -3.485 1.00100.74 ATOM 49 O TRP F 898 11.971 5.512 -3.482 1.00 97.68 ATOM 50 CB TRP F 898 8.996 5.879 -2.206 1.00102.36 ATOM 51 CG TRP F 898 8.472 5.642 -0.821 1.00102.11 ATOM 52 CD1 TRP F 898 7.386 6.232 -0.242 1.00105.24 ATOM 53 CD2 TRP F 898 9.010 4.745 0.158 1.00 98.94 ATOM 54 NE1 TRP F 898 7.217 5.761 1.037 1.00 98.32 ATOM 55 CE2 TRP F 898 8.201 4.846 1.307 1.00 99.36 ATOM 56 CE3 TRP F 898 10.098 3.868 0.175 1.00 97.55 ATOM 57 CZ2 TRP F 898 8.445 4.103 2.460 1.00100.84 ATOM 58 CZ3 TRP F 898 10.340 3.132 1.320 1.00 96.16 ATOM 59 CH2 TRP F 898 9.516 3.254 2.447 1.00101.81 ATOM 60 N MET F 899 10.833 7.119 -4.572 1.00103.52 ATOM 61 CA MET F 899 11.651 6.964 -5.769 1.00106.99 ATOM 62 C MET F 899 13.088 7.401 -5.519 1.00106.67 ATOM 63 O MET F 899 14.013 6.889 -6.160 1.00107.11 ATOM 64 CB MET F 899 11.050 7.750 -6.936 1.00103.57 ATOM 65 CG MET F 899 9.637 7.332 -7.309 1.00 99.97 ATOM 66 SD MET F 899 8.727 8.637 -8.159 1.00105.90 ATOM 67 CE MET F 899 9.811 8.957 -9.549 1.00113.99 ATOM 68 N SER F 900 13.297 8.340 -4.594 1.00101.57 ATOM 69 CA SER F 900 14.652 8.788 -4.294 1.00104.74 ATOM 70 C SER F 900 15.404 7.759 -3.458 1.00102.26 ATOM 71 O SER F 900 16.603 7.543 -3.669 1.00100.33 ATOM 72 CB SER F 900 14.615 10.137 -3.577 1.00103.78 ATOM 73 OG SER F 900 13.877 10.048 -2.371 1.00106.39 ATOM 74 N VAL F 901 14.724 7.119 -2.503 1.00100.78 ATOM 75 CA VAL F 901 15.355 6.034 -1.759 1.00102.56 ATOM 76 C VAL F 901 15.443 4.767 -2.598 1.00105.34 ATOM 77 O VAL F 901 16.207 3.856 -2.255 1.00 99.47 ATOM 78 CB VAL F 901 14.616 5.738 -0.442 1.00 98.64 ATOM 79 CG1 VAL F 901 14.228 7.029 0.258 1.00 93.69 ATOM 80 CG2 VAL F 901 13.393 4.872 -0.692 1.00100.66 ATOM 81 N PHE F 902 14.678 4.686 -3.691 1.00106.69 ATOM 82 CA PHE F 902 14.760 3.542 -4.590 1.00106.20 ATOM 83 C PHE F 902 16.033 3.560 -5.423 1.00103.82 ATOM 84 O PHE F 902 16.466 2.502 -5.892 1.00109.52 ATOM 85 CB PHE F 902 13.544 3.509 -5.516 1.00107.68 ATOM 86 CG PHE F 902 12.323 2.895 -4.894 1.00106.25 ATOM 87 CD1 PHE F 902 11.059 3.202 -5.371 1.00103.28 ATOM 88 CD2 PHE F 902 12.437 2.016 -3.830 1.00108.84 ATOM 89 CE1 PHE F 902 9.933 2.642 -4.801 1.00107.22 ATOM 90 CE2 PHE F 902 11.314 1.454 -3.256 1.00108.34 ATOM 91 CZ PHE F 902 10.061 1.766 -3.743 1.00110.20 ATOM 92 N ARG F 903 16.636 4.734 -5.618 1.00 97.34 ATOM 93 CA ARG F 903 17.862 4.816 -6.402 1.00 97.01 ATOM 94 C ARG F 903 19.012 4.086 -5.723 1.00 99.54 ATOM 95 O ARG F 903 19.864 3.505 -6.404 1.00100.82 ATOM 96 CB ARG F 903 18.234 6.280 -6.643 1.00101.50 ATOM 97 N TYR F 904 19.056 4.104 -4.390 1.00106.62 ATOM 98 CA TYR F 904 20.136 3.440 -3.671 1.00107.38 ATOM 99 C TYR F 904 19.955 1.928 -3.625 1.00108.53 ATOM 100 O TYR F 904 20.949 1.193 -3.622 1.00108.31 ATOM 101 CB TYR F 904 20.254 4.020 -2.262 1.00 99.15 ATOM 102 CG TYR F 904 20.693 5.466 -2.264 1.00 95.79 ATOM 103 CD1 TYR F 904 22.038 5.800 -2.190 1.00 96.22 ATOM 104 CD2 TYR F 904 19.766 6.495 -2.366 1.00 95.91 ATOM 105 CE1 TYR F 904 22.448 7.118 -2.202 1.00 93.30 ATOM 106 CE2 TYR F 904 20.167 7.817 -2.380 1.00 97.80 ATOM 107 CZ TYR F 904 21.509 8.121 -2.297 1.00 94.64 ATOM 108 OH TYR F 904 21.915 9.435 -2.311 1.00 99.72 ATOM 109 N LEU F 905 18.716 1.444 -3.583 1.00105.98 ATOM 110 CA LEU F 905 18.481 0.009 -3.655 1.00107.37 ATOM 111 C LEU F 905 18.837 -0.502 -5.046 1.00114.71 ATOM 112 O LEU F 905 18.471 0.109 -6.055 1.00111.80 ATOM 113 CB LEU F 905 17.023 -0.308 -3.325 1.00 96.03 ATOM 114 N SER F 906 19.553 -1.623 -5.102 1.00115.81 ATOM 115 CA SER F 906 19.985 -2.167 -6.379 1.00113.51 ATOM 116 C SER F 906 18.797 -2.731 -7.160 1.00123.31 ATOM 117 O SER F 906 17.674 -2.838 -6.656 1.00121.19 ATOM 118 CB SER F 906 21.046 -3.247 -6.169 1.00111.53 ATOM 119 OG SER F 906 21.580 -3.685 -7.407 1.00115.76 ATOM 120 N ARG F 907 19.062 -3.095 -8.419 1.00127.79 ATOM 121 CA ARG F 907 18.013 -3.645 -9.272 1.00116.39 ATOM 122 C ARG F 907 17.516 -4.992 -8.764 1.00118.13 ATOM 123 O ARG F 907 16.340 -5.326 -8.950 1.00118.55 ATOM 124 CB ARG F 907 18.518 -3.779 -10.709 1.00106.59 ATOM 125 N ARG F 908 18.389 -5.776 -8.127 1.00120.33 ATOM 126 CA ARG F 908 17.968 -7.072 -7.608 1.00118.30 ATOM 127 C ARG F 908 17.054 -6.910 -6.401 1.00119.49 ATOM 128 O ARG F 908 16.056 -7.628 -6.270 1.00120.99 ATOM 129 CB ARG F 908 19.191 -7.917 -7.249 1.00117.34 ATOM 130 N GLU F 909 17.378 -5.972 -5.509 1.00123.58 ATOM 131 CA GLU F 909 16.529 -5.742 -4.346 1.00127.08 ATOM 132 C GLU F 909 15.200 -5.122 -4.751 1.00122.55 ATOM 133 O GLU F 909 14.171 -5.391 -4.120 1.00120.21 ATOM 134 CB GLU F 909 17.249 -4.852 -3.333 1.00116.33 ATOM 135 N LEU F 910 15.205 -4.293 -5.796 1.00117.17 ATOM 136 CA LEU F 910 13.973 -3.699 -6.298 1.00118.07 ATOM 137 C LEU F 910 13.064 -4.724 -6.963 1.00120.67 ATOM 138 O LEU F 910 11.856 -4.483 -7.067 1.00115.75 ATOM 139 CB LEU F 910 14.295 -2.573 -7.280 1.00123.98 ATOM 140 N CYS F 911 13.614 -5.852 -7.422 1.00121.91 ATOM 141 CA CYS F 911 12.784 -6.885 -8.035 1.00119.97 ATOM 142 C CYS F 911 11.762 -7.423 -7.042 1.00123.93 ATOM 143 O CYS F 911 10.567 -7.512 -7.348 1.00120.08 ATOM 144 CB CYS F 911 13.664 -8.014 -8.572 1.00108.16 ATOM 145 N GLU F 912 12.215 -7.786 -5.840 1.00124.65 ATOM 146 CA GLU F 912 11.285 -8.210 -4.802 1.00120.22 ATOM 147 C GLU F 912 10.490 -7.039 -4.243 1.00119.76 ATOM 148 O GLU F 912 9.402 -7.247 -3.695 1.00121.61 ATOM 149 CB GLU F 912 12.037 -8.917 -3.674 1.00121.28 ATOM 150 N CYS F 913 11.010 -5.816 -4.373 1.00123.06 ATOM 151 CA CYS F 913 10.332 -4.638 -3.846 1.00119.57 ATOM 152 C CYS F 913 9.026 -4.345 -4.573 1.00113.48 ATOM 153 O CYS F 913 8.154 -3.674 -4.010 1.00107.76 ATOM 154 CB CYS F 913 11.263 -3.427 -3.931 1.00120.49 ATOM 155 SG CYS F 913 10.686 -1.956 -3.068 1.00117.89 ATOM 156 N MET F 914 8.870 -4.831 -5.806 1.00111.94 ATOM 157 CA MET F 914 7.633 -4.591 -6.540 1.00110.49 ATOM 158 C MET F 914 6.491 -5.435 -5.993 1.00109.00 ATOM 159 O MET F 914 5.325 -5.033 -6.081 1.00111.48 ATOM 160 CB MET F 914 7.839 -4.871 -8.029 1.00115.43 ATOM 161 N ARG F 915 6.804 -6.601 -5.430 1.00107.56 ATOM 162 CA ARG F 915 5.803 -7.507 -4.879 1.00109.26 ATOM 163 C ARG F 915 5.311 -7.084 -3.500 1.00107.59 ATOM 164 O ARG F 915 4.514 -7.810 -2.897 1.00104.26 ATOM 165 CB ARG F 915 6.364 -8.930 -4.810 1.00105.75 ATOM 166 N VAL F 916 5.764 -5.941 -2.988 1.00111.96 ATOM 167 CA VAL F 916 5.336 -5.485 -1.668 1.00113.49 ATOM 168 C VAL F 916 3.916 -4.936 -1.726 1.00118.90 ATOM 169 O VAL F 916 3.016 -5.416 -1.027 1.00122.65 ATOM 170 CB VAL F 916 6.320 -4.439 -1.113 1.00112.77 ATOM 171 N CYS F 917 3.696 -3.921 -2.558 1.00120.74 ATOM 172 CA CYS F 917 2.390 -3.295 -2.683 1.00118.47 ATOM 173 C CYS F 917 2.133 -2.965 -4.146 1.00120.27 ATOM 174 O CYS F 917 3.052 -2.928 -4.968 1.00121.41 ATOM 175 CB CYS F 917 2.284 -2.027 -1.823 1.00113.04 ATOM 176 N LYS F 918 0.859 -2.722 -4.463 1.00119.39 ATOM 177 CA LYS F 918 0.492 -2.386 -5.835 1.00116.51 ATOM 178 C LYS F 918 0.929 -0.972 -6.195 1.00116.57 ATOM 179 O LYS F 918 1.395 -0.727 -7.314 1.00123.63 ATOM 180 CB LYS F 918 -1.016 -2.549 -6.030 1.00115.30 ATOM 181 N THR F 919 0.780 -0.027 -5.262 1.00118.97 ATOM 182 CA THR F 919 1.251 1.334 -5.498 1.00120.49 ATOM 183 C THR F 919 2.752 1.370 -5.750 1.00125.00 ATOM 184 O THR F 919 3.237 2.225 -6.500 1.00127.66 ATOM 185 CB THR F 919 0.894 2.230 -4.311 1.00112.04 ATOM 186 N TRP F 920 3.502 0.454 -5.133 1.00127.13 ATOM 187 CA TRP F 920 4.933 0.370 -5.396 1.00127.59 ATOM 188 C TRP F 920 5.218 -0.229 -6.767 1.00128.56 ATOM 189 O TRP F 920 6.188 0.166 -7.425 1.00129.21 ATOM 190 CB TRP F 920 5.614 -0.452 -4.301 1.00123.21 ATOM 191 CG TRP F 920 5.704 0.265 -2.988 1.00119.90 ATOM 192 CD1 TRP F 920 4.893 1.269 -2.541 1.00119.00 ATOM 193 CD2 TRP F 920 6.661 0.032 -1.949 1.00118.24 ATOM 194 NE1 TRP F 920 5.287 1.675 -1.290 1.00115.93 ATOM 195 CE2 TRP F 920 6.370 0.931 -0.904 1.00116.78 ATOM 196 CE3 TRP F 920 7.735 -0.849 -1.800 1.00117.33 ATOM 197 CZ2 TRP F 920 7.118 0.977 0.269 1.00112.92 ATOM 198 CZ3 TRP F 920 8.473 -0.804 -0.633 1.00116.78 ATOM 199 CH2 TRP F 920 8.160 0.101 0.387 1.00112.72 ATOM 200 N TYR F 921 4.391 -1.178 -7.214 1.00128.02 ATOM 201 CA TYR F 921 4.578 -1.754 -8.542 1.00119.92 ATOM 202 C TYR F 921 4.371 -0.709 -9.630 1.00118.49 ATOM 203 O TYR F 921 5.073 -0.715 -10.649 1.00122.18 ATOM 204 CB TYR F 921 3.625 -2.933 -8.740 1.00116.14 ATOM 205 N LYS F 922 3.414 0.201 -9.433 1.00118.58 ATOM 206 CA LYS F 922 3.191 1.262 -10.407 1.00122.24 ATOM 207 C LYS F 922 4.284 2.320 -10.369 1.00127.47 ATOM 208 O LYS F 922 4.470 3.037 -11.358 1.00124.49 ATOM 209 CB LYS F 922 1.828 1.915 -10.173 1.00114.52 ATOM 210 N TRP F 923 5.010 2.434 -9.256 1.00128.49 ATOM 211 CA TRP F 923 6.064 3.433 -9.130 1.00127.59 ATOM 212 C TRP F 923 7.398 2.933 -9.668 1.00126.11 ATOM 213 O TRP F 923 8.131 3.696 -10.306 1.00128.82 ATOM 214 CB TRP F 923 6.216 3.869 -7.670 1.00122.92 ATOM 215 CG TRP F 923 5.169 4.846 -7.226 1.00130.36 ATOM 216 CD1 TRP F 923 4.310 5.545 -8.025 1.00137.04 ATOM 217 CD2 TRP F 923 4.879 5.246 -5.881 1.00128.53 ATOM 218 NE1 TRP F 923 3.500 6.349 -7.260 1.00133.54 ATOM 219 CE2 TRP F 923 3.829 6.184 -5.941 1.00127.66 ATOM 220 CE3 TRP F 923 5.403 4.899 -4.632 1.00124.08 ATOM 221 CZ2 TRP F 923 3.293 6.779 -4.800 1.00123.73 ATOM 222 CZ3 TRP F 923 4.870 5.490 -3.501 1.00121.81 ATOM 223 CH2 TRP F 923 3.826 6.420 -3.593 1.00122.11 ATOM 224 N CYS F 924 7.732 1.665 -9.420 1.00123.88 ATOM 225 CA CYS F 924 8.980 1.127 -9.950 1.00128.10 ATOM 226 C CYS F 924 8.932 1.006 -11.467 1.00130.20 ATOM 227 O CYS F 924 9.980 1.022 -12.123 1.00125.99 ATOM 228 CB CYS F 924 9.277 -0.233 -9.319 1.00130.28 ATOM 229 SG CYS F 924 9.371 -0.220 -7.514 1.00127.42 ATOM 230 N CYS F 925 7.734 0.880 -12.038 1.00129.04 ATOM 231 CA CYS F 925 7.545 0.805 -13.479 1.00134.09 ATOM 232 C CYS F 925 7.209 2.160 -14.094 1.00139.83 ATOM 233 O CYS F 925 6.680 2.212 -15.210 1.00138.66 ATOM 234 CB CYS F 925 6.455 -0.214 -13.815 1.00136.05 ATOM 235 SG CYS F 925 6.926 -1.930 -13.506 1.00156.81 ATOM 236 N ASP F 926 7.501 3.256 -13.392 1.00139.21 ATOM 237 CA ASP F 926 7.212 4.608 -13.877 1.00135.49 ATOM 238 C ASP F 926 8.486 5.449 -13.831 1.00134.60 ATOM 239 O ASP F 926 8.801 6.052 -12.801 1.00133.05 ATOM 240 CB ASP F 926 6.092 5.248 -13.060 1.00131.09 ATOM 241 N LYS F 927 9.210 5.485 -14.952 1.00132.72 ATOM 242 CA LYS F 927 10.327 6.407 -15.168 1.00134.31 ATOM 243 C LYS F 927 11.401 6.244 -14.087 1.00130.51 ATOM 244 O LYS F 927 11.666 7.138 -13.280 1.00126.20 ATOM 245 CB LYS F 927 9.825 7.855 -15.235 1.00126.08 ATOM 246 N ARG F 928 12.014 5.061 -14.093 1.00127.24 ATOM 247 CA ARG F 928 13.098 4.741 -13.167 1.00127.53 ATOM 248 C ARG F 928 14.188 4.010 -13.936 1.00123.98 ATOM 249 O ARG F 928 13.982 2.876 -14.379 1.00124.35 ATOM 250 CB ARG F 928 12.596 3.897 -11.995 1.00128.53 ATOM 251 N LEU F 929 15.342 4.652 -14.090 1.00124.74 ATOM 252 CA LEU F 929 16.471 4.049 -14.790 1.00121.95 ATOM 253 C LEU F 929 17.783 4.717 -14.390 1.00123.16 ATOM 254 O LEU F 929 18.288 5.587 -15.099 1.00121.94 ATOM 255 CB LEU F 929 16.276 4.139 -16.305 1.00115.53 TER