HEADER RIBOSOME 31-DEC-69 6C5L TITLE Conformation of methylated GGQ in the Peptidyl Transferase Center TITLE 2 during translation termination (T. thermophilus) COMPND MOL_ID: 29; COMPND 2 MOLECULE: 50S ribosomal protein L31; COMPND 3 CHAIN: B4, D4; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.20 ANGSTORMS DBREF 6C5L B 1 71 UNP Q72JR0 RL31_THET2 1 71 SEQRES 1 B4 31 VAL PRO ALA ARG ILE ILE CYS GLY CYS GLY ASN VAL ILE SEQRES 2 B4 31 GLU THR TYR SER THR LYS PRO GLU ILE TYR VAL GLU VAL SEQRES 3 B4 31 CYS SER LYS CYS HIS ATOM 1 N VAL B 10 -125.451 161.318 120.184 1.00219.39 ATOM 2 CA VAL B 10 -126.523 162.042 119.508 1.00233.31 ATOM 3 C VAL B 10 -127.457 161.047 118.785 1.00250.78 ATOM 4 O VAL B 10 -127.075 159.898 118.571 1.00257.34 ATOM 5 CB VAL B 10 -125.918 163.090 118.553 1.00224.77 ATOM 6 CG1 VAL B 10 -124.978 164.013 119.322 1.00217.97 ATOM 7 CG2 VAL B 10 -125.186 162.407 117.413 1.00221.77 ATOM 8 N PRO B 11 -128.667 161.475 118.412 1.00250.35 ATOM 9 CA PRO B 11 -129.600 160.563 117.731 1.00246.11 ATOM 10 C PRO B 11 -129.137 160.132 116.342 1.00242.40 ATOM 11 O PRO B 11 -128.216 160.697 115.749 1.00241.10 ATOM 12 CB PRO B 11 -130.884 161.396 117.673 1.00241.59 ATOM 13 CG PRO B 11 -130.368 162.789 117.505 1.00242.71 ATOM 14 CD PRO B 11 -129.254 162.825 118.529 1.00245.12 ATOM 15 N ALA B 12 -129.814 159.101 115.824 1.00240.25 ATOM 16 CA ALA B 12 -129.527 158.534 114.510 1.00227.44 ATOM 17 C ALA B 12 -130.700 157.665 114.069 1.00227.75 ATOM 18 O ALA B 12 -131.556 157.294 114.876 1.00227.63 ATOM 19 CB ALA B 12 -128.232 157.714 114.521 1.00220.03 ATOM 20 N ARG B 13 -130.731 157.349 112.771 1.00233.98 ATOM 21 CA ARG B 13 -131.780 156.528 112.162 1.00240.76 ATOM 22 C ARG B 13 -131.140 155.252 111.625 1.00235.30 ATOM 23 O ARG B 13 -130.312 155.308 110.710 1.00235.07 ATOM 24 CB ARG B 13 -132.516 157.314 111.071 1.00241.73 ATOM 25 CG ARG B 13 -133.113 158.632 111.597 1.00235.75 ATOM 26 CD ARG B 13 -133.552 159.610 110.498 1.00229.42 ATOM 27 NE ARG B 13 -134.443 159.050 109.479 1.00231.83 ATOM 28 CZ ARG B 13 -135.624 158.476 109.711 1.00226.57 ATOM 29 NH1 ARG B 13 -136.104 158.368 110.943 1.00220.21 ATOM 30 NH2 ARG B 13 -136.334 158.012 108.691 1.00226.42 ATOM 31 N ILE B 14 -131.514 154.110 112.199 1.00234.28 ATOM 32 CA ILE B 14 -130.954 152.809 111.809 1.00230.30 ATOM 33 C ILE B 14 -131.777 152.180 110.687 1.00231.39 ATOM 34 O ILE B 14 -132.697 151.402 110.939 1.00223.57 ATOM 35 CB ILE B 14 -130.824 151.855 113.001 1.00228.09 ATOM 36 CG1 ILE B 14 -130.184 152.521 114.227 1.00232.31 ATOM 37 CG2 ILE B 14 -130.072 150.578 112.602 1.00218.44 ATOM 38 CD1 ILE B 14 -131.103 153.439 115.026 1.00228.91 ATOM 39 N ILE B 15 -131.464 152.513 109.429 1.00239.62 ATOM 40 CA ILE B 15 -132.205 151.881 108.343 1.00241.16 ATOM 41 C ILE B 15 -131.660 150.459 108.254 1.00240.64 ATOM 42 O ILE B 15 -130.479 150.225 108.533 1.00238.42 ATOM 43 CB ILE B 15 -132.031 152.639 107.006 1.00243.56 ATOM 44 CG1 ILE B 15 -132.199 154.155 107.180 1.00244.05 ATOM 45 CG2 ILE B 15 -133.007 152.120 105.949 1.00240.58 ATOM 46 CD1 ILE B 15 -133.519 154.587 107.731 1.00242.88 ATOM 47 N CYS B 16 -132.487 149.486 107.871 1.00239.92 ATOM 48 CA CYS B 16 -131.996 148.114 107.808 1.00233.60 ATOM 49 C CYS B 16 -131.802 147.676 106.353 1.00224.02 ATOM 50 O CYS B 16 -131.537 148.519 105.476 1.00214.45 ATOM 51 CB CYS B 16 -132.940 147.210 108.595 1.00228.15 ATOM 52 SG CYS B 16 -133.084 147.609 110.344 1.00235.12 ATOM 53 N GLY B 17 -131.931 146.374 106.103 1.00224.93 ATOM 54 CA GLY B 17 -131.822 145.766 104.794 1.00223.48 ATOM 55 C GLY B 17 -132.963 144.776 104.711 1.00219.96 ATOM 56 O GLY B 17 -133.161 144.073 103.713 1.00213.98 ATOM 57 N CYS B 18 -133.702 144.721 105.820 1.00220.81 ATOM 58 CA CYS B 18 -134.880 143.889 106.011 1.00221.73 ATOM 59 C CYS B 18 -136.090 144.795 106.198 1.00220.51 ATOM 60 O CYS B 18 -136.998 144.509 106.982 1.00221.03 ATOM 61 CB CYS B 18 -134.715 142.943 107.204 1.00218.04 ATOM 62 SG CYS B 18 -134.414 143.719 108.832 1.00214.38 ATOM 63 N GLY B 19 -136.104 145.901 105.454 1.00217.90 ATOM 64 CA GLY B 19 -137.167 146.887 105.486 1.00216.48 ATOM 65 C GLY B 19 -137.222 147.746 106.737 1.00227.76 ATOM 66 O GLY B 19 -137.357 148.971 106.650 1.00232.78 ATOM 67 N ASN B 20 -137.108 147.108 107.903 1.00230.55 ATOM 68 CA ASN B 20 -137.160 147.762 109.208 1.00232.28 ATOM 69 C ASN B 20 -136.270 148.995 109.331 1.00232.79 ATOM 70 O ASN B 20 -135.294 149.148 108.591 1.00231.11 ATOM 71 CB ASN B 20 -136.791 146.752 110.299 1.00226.69 ATOM 72 CG ASN B 20 -137.267 147.178 111.672 1.00224.97 ATOM 73 OD1 ASN B 20 -137.573 148.348 111.899 1.00226.58 ATOM 74 ND2 ASN B 20 -137.338 146.227 112.595 1.00225.58 ATOM 75 N VAL B 21 -136.614 149.880 110.267 1.00234.57 ATOM 76 CA VAL B 21 -135.866 151.106 110.540 1.00225.23 ATOM 77 C VAL B 21 -136.013 151.404 112.026 1.00222.88 ATOM 78 O VAL B 21 -137.133 151.447 112.546 1.00212.83 ATOM 79 CB VAL B 21 -136.371 152.302 109.702 1.00221.35 ATOM 80 CG1 VAL B 21 -135.856 153.614 110.281 1.00215.63 ATOM 81 CG2 VAL B 21 -135.972 152.162 108.241 1.00216.24 ATOM 82 N ILE B 22 -134.892 151.615 112.716 1.00226.85 ATOM 83 CA ILE B 22 -134.917 151.893 114.148 1.00228.38 ATOM 84 C ILE B 22 -134.593 153.365 114.359 1.00233.22 ATOM 85 O ILE B 22 -133.836 153.971 113.593 1.00236.46 ATOM 86 CB ILE B 22 -133.937 151.004 114.956 1.00222.02 ATOM 87 CG1 ILE B 22 -134.165 149.510 114.702 1.00226.16 ATOM 88 CG2 ILE B 22 -134.068 151.253 116.446 1.00213.41 ATOM 89 CD1 ILE B 22 -133.557 148.978 113.429 1.00225.27 ATOM 90 N GLU B 23 -135.197 153.950 115.390 1.00232.45 ATOM 91 CA GLU B 23 -134.981 155.352 115.737 1.00234.12 ATOM 92 C GLU B 23 -134.418 155.384 117.159 1.00238.92 ATOM 93 O GLU B 23 -135.172 155.298 118.133 1.00240.94 ATOM 94 CB GLU B 23 -136.284 156.134 115.591 1.00224.69 ATOM 95 CG GLU B 23 -136.595 156.502 114.138 1.00217.58 ATOM 96 CD GLU B 23 -137.932 157.198 113.971 1.00208.70 ATOM 97 OE1 GLU B 23 -138.971 156.524 114.135 1.00207.81 ATOM 98 OE2 GLU B 23 -137.947 158.405 113.653 1.00203.23 ATOM 99 N THR B 24 -133.093 155.507 117.278 1.00238.17 ATOM 100 CA THR B 24 -132.394 155.570 118.561 1.00239.24 ATOM 101 C THR B 24 -131.331 156.661 118.506 1.00244.08 ATOM 102 O THR B 24 -131.556 157.720 117.909 1.00244.52 ATOM 103 CB THR B 24 -131.766 154.229 118.960 1.00227.77 ATOM 104 OG1 THR B 24 -130.831 153.808 117.965 1.00230.76 ATOM 105 CG2 THR B 24 -132.836 153.161 119.147 1.00221.32 ATOM 106 N TYR B 25 -130.170 156.415 119.118 1.00242.43 ATOM 107 CA TYR B 25 -129.089 157.388 119.146 1.00239.43 ATOM 108 C TYR B 25 -127.767 156.699 118.833 1.00226.03 ATOM 109 O TYR B 25 -127.661 155.469 118.865 1.00216.30 ATOM 110 CB TYR B 25 -128.959 158.062 120.523 1.00241.88 ATOM 111 CG TYR B 25 -130.207 158.708 121.086 1.00248.02 ATOM 112 CD1 TYR B 25 -131.264 157.939 121.562 1.00247.88 ATOM 113 CD2 TYR B 25 -130.312 160.089 121.177 1.00250.56 ATOM 114 CE1 TYR B 25 -132.401 158.529 122.085 1.00249.57 ATOM 115 CE2 TYR B 25 -131.440 160.688 121.702 1.00252.81 ATOM 116 CZ TYR B 25 -132.482 159.905 122.153 1.00254.40 ATOM 117 OH TYR B 25 -133.601 160.504 122.682 1.00253.86 ATOM 118 N SER B 26 -126.746 157.538 118.594 1.00225.78 ATOM 119 CA SER B 26 -125.367 157.160 118.284 1.00211.61 ATOM 120 C SER B 26 -124.621 158.301 117.602 1.00221.34 ATOM 121 O SER B 26 -124.293 159.313 118.229 1.00218.46 ATOM 122 CB SER B 26 -125.307 155.944 117.360 1.00198.08 ATOM 123 OG SER B 26 -125.783 156.263 116.066 1.00198.40 ATOM 124 N THR B 27 -124.373 158.130 116.304 1.00219.03 ATOM 125 CA THR B 27 -123.676 159.075 115.440 1.00224.79 ATOM 126 C THR B 27 -124.133 158.804 114.012 1.00239.04 ATOM 127 O THR B 27 -124.745 157.771 113.731 1.00240.87 ATOM 128 CB THR B 27 -122.150 158.939 115.542 1.00209.86 ATOM 129 OG1 THR B 27 -121.789 157.552 115.505 1.00198.12 ATOM 130 CG2 THR B 27 -121.600 159.591 116.808 1.00202.33 ATOM 131 N LYS B 28 -123.832 159.759 113.107 1.00248.77 ATOM 132 CA LYS B 28 -124.166 159.703 111.680 1.00248.64 ATOM 133 C LYS B 28 -125.570 159.147 111.446 1.00248.07 ATOM 134 O LYS B 28 -125.733 157.974 111.083 1.00243.79 ATOM 135 CB LYS B 28 -123.101 158.913 110.899 1.00246.12 ATOM 136 CG LYS B 28 -122.750 157.513 111.411 1.00235.28 ATOM 137 CD LYS B 28 -121.419 157.036 110.852 1.00219.90 ATOM 138 CE LYS B 28 -121.014 155.694 111.438 1.00203.57 ATOM 139 NZ LYS B 28 -119.701 155.241 110.903 1.00207.12 ATOM 140 N PRO B 29 -126.611 159.967 111.663 1.00251.23 ATOM 141 CA PRO B 29 -128.000 159.511 111.485 1.00255.86 ATOM 142 C PRO B 29 -128.359 158.818 110.175 1.00253.43 ATOM 143 O PRO B 29 -129.294 159.233 109.484 1.00253.30 ATOM 144 CB PRO B 29 -128.786 160.822 111.625 1.00259.69 ATOM 145 CG PRO B 29 -127.972 161.590 112.613 1.00255.36 ATOM 146 CD PRO B 29 -126.569 161.372 112.104 1.00253.67 ATOM 147 N GLU B 30 -127.638 157.743 109.852 1.00249.99 ATOM 148 CA GLU B 30 -127.856 156.939 108.654 1.00251.66 ATOM 149 C GLU B 30 -127.201 155.589 108.905 1.00251.44 ATOM 150 O GLU B 30 -126.006 155.543 109.211 1.00247.01 ATOM 151 CB GLU B 30 -127.236 157.587 107.400 1.00254.60 ATOM 152 CG GLU B 30 -127.887 158.867 106.877 1.00253.80 ATOM 153 CD GLU B 30 -127.207 159.396 105.625 1.00257.20 ATOM 154 OE1 GLU B 30 -127.137 158.655 104.623 1.00262.44 ATOM 155 OE2 GLU B 30 -126.736 160.554 105.648 1.00256.23 ATOM 156 N ILE B 31 -127.954 154.499 108.731 1.00255.58 ATOM 157 CA ILE B 31 -127.436 153.150 108.942 1.00244.78 ATOM 158 C ILE B 31 -128.025 152.261 107.853 1.00241.27 ATOM 159 O ILE B 31 -129.092 152.553 107.309 1.00244.51 ATOM 160 CB ILE B 31 -127.800 152.606 110.347 1.00234.51 ATOM 161 CG1 ILE B 31 -127.302 153.522 111.467 1.00230.22 ATOM 162 CG2 ILE B 31 -127.164 151.259 110.581 1.00232.17 ATOM 163 CD1 ILE B 31 -125.804 153.651 111.543 1.00228.02 ATOM 164 N TYR B 32 -127.306 151.173 107.505 1.00239.25 ATOM 165 CA TYR B 32 -127.738 150.220 106.470 1.00240.16 ATOM 166 C TYR B 32 -127.473 148.783 106.963 1.00236.70 ATOM 167 O TYR B 32 -126.667 148.055 106.390 1.00239.08 ATOM 168 CB TYR B 32 -127.021 150.505 105.148 1.00239.67 ATOM 169 CG TYR B 32 -127.819 151.349 104.170 1.00236.38 ATOM 170 CD1 TYR B 32 -129.115 151.759 104.461 1.00233.42 ATOM 171 CD2 TYR B 32 -127.247 151.782 102.978 1.00236.41 ATOM 172 CE1 TYR B 32 -129.829 152.552 103.580 1.00232.03 ATOM 173 CE2 TYR B 32 -127.952 152.570 102.089 1.00235.27 ATOM 174 CZ TYR B 32 -129.241 152.954 102.396 1.00235.19 ATOM 175 OH TYR B 32 -129.944 153.740 101.512 1.00239.40 ATOM 176 N VAL B 33 -128.149 148.339 108.029 1.00230.16 ATOM 177 CA VAL B 33 -127.883 146.993 108.542 1.00221.89 ATOM 178 C VAL B 33 -128.420 145.892 107.634 1.00220.26 ATOM 179 O VAL B 33 -129.550 145.953 107.134 1.00228.63 ATOM 180 CB VAL B 33 -128.496 146.830 109.945 1.00216.13 ATOM 181 CG1 VAL B 33 -128.028 145.532 110.586 1.00212.26 ATOM 182 CG2 VAL B 33 -128.160 148.000 110.824 1.00215.38 ATOM 183 N GLU B 34 -127.589 144.860 107.435 1.00221.21 ATOM 184 CA GLU B 34 -127.912 143.670 106.641 1.00229.47 ATOM 185 C GLU B 34 -128.778 142.714 107.471 1.00227.70 ATOM 186 O GLU B 34 -128.323 141.664 107.933 1.00223.02 ATOM 187 CB GLU B 34 -126.656 142.966 106.131 1.00233.22 ATOM 188 CG GLU B 34 -125.572 143.808 105.433 1.00241.41 ATOM 189 CD GLU B 34 -124.904 144.836 106.324 1.00247.58 ATOM 190 OE1 GLU B 34 -124.348 144.449 107.373 1.00248.57 ATOM 191 OE2 GLU B 34 -124.909 146.029 105.957 1.00251.34 ATOM 192 N VAL B 35 -130.037 143.111 107.684 1.00229.26 ATOM 193 CA VAL B 35 -131.018 142.360 108.476 1.00225.57 ATOM 194 C VAL B 35 -130.675 142.440 109.961 1.00214.75 ATOM 195 O VAL B 35 -129.535 142.190 110.368 1.00197.45 ATOM 196 CB VAL B 35 -131.142 140.890 108.018 1.00221.35 ATOM 197 CG1 VAL B 35 -132.252 140.172 108.787 1.00214.26 ATOM 198 CG2 VAL B 35 -131.405 140.819 106.522 1.00220.55 ATOM 199 N CYS B 36 -131.663 142.794 110.781 1.00216.01 ATOM 200 CA CYS B 36 -131.454 142.910 112.218 1.00214.80 ATOM 201 C CYS B 36 -131.826 141.636 112.967 1.00212.71 ATOM 202 O CYS B 36 -131.582 140.522 112.492 1.00213.73 ATOM 203 CB CYS B 36 -132.262 144.085 112.765 1.00217.75 ATOM 204 SG CYS B 36 -134.037 143.914 112.483 1.00232.18 ATOM 205 N SER B 37 -132.393 141.809 114.162 1.00211.12 ATOM 206 CA SER B 37 -132.853 140.723 115.019 1.00203.21 ATOM 207 C SER B 37 -134.070 140.021 114.431 1.00205.96 ATOM 208 O SER B 37 -135.183 140.182 114.944 1.00204.76 ATOM 209 CB SER B 37 -133.187 141.254 116.412 1.00193.51 ATOM 210 OG SER B 37 -133.961 142.436 116.318 1.00197.38 ATOM 211 N LYS B 38 -133.894 139.251 113.361 1.00203.64 ATOM 212 CA LYS B 38 -135.066 138.615 112.776 1.00198.43 ATOM 213 C LYS B 38 -134.743 137.217 112.249 1.00210.75 ATOM 214 O LYS B 38 -135.307 136.783 111.239 1.00210.73 ATOM 215 CB LYS B 38 -135.656 139.508 111.678 1.00178.75 ATOM 216 CG LYS B 38 -137.101 139.206 111.319 1.00188.03 ATOM 217 CD LYS B 38 -137.675 140.281 110.416 1.00198.08 ATOM 218 CE LYS B 38 -139.160 140.058 110.179 1.00206.51 ATOM 219 NZ LYS B 38 -139.782 141.175 109.416 1.00204.22 ATOM 220 N CYS B 39 -133.838 136.502 112.917 1.00219.86 ATOM 221 CA CYS B 39 -133.455 135.147 112.511 1.00210.60 ATOM 222 C CYS B 39 -133.158 134.281 113.741 1.00194.24 ATOM 223 O CYS B 39 -132.685 133.149 113.622 1.00168.96 ATOM 224 CB CYS B 39 -132.245 135.169 111.563 1.00206.43 ATOM 225 SG CYS B 39 -132.536 135.933 109.933 1.00204.66 ATOM 226 N HIS B 40 -133.455 134.815 114.922 1.00201.72 TER