HEADER HYDROLASE/DNA/RNA 31-DEC-69 6CVP TITLE Human Aprataxin (Aptx) R199H bound to RNA-DNA, AMP and Zn product TITLE 2 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Aprataxin; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.1.11.7,3.1.12.2; COMPND 6 FRAGMENT: Aprataxin catalytic ; COMPND 7 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.00 ANGSTORMS DBREF 6CVP A 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 SEQRES 1 A 25 PRO LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER SEQRES 2 A 25 ILE PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP ATOM 1 N PRO A 316 6.502 -1.095 20.942 1.00 27.92 ATOM 2 CA PRO A 316 7.131 -2.310 20.422 1.00 25.35 ATOM 3 C PRO A 316 7.037 -2.361 18.908 1.00 25.02 ATOM 4 O PRO A 316 6.110 -1.823 18.298 1.00 27.31 ATOM 5 CB PRO A 316 6.343 -3.446 21.099 1.00 32.63 ATOM 6 CG PRO A 316 5.145 -2.826 21.670 1.00 34.45 ATOM 7 CD PRO A 316 5.484 -1.396 21.960 1.00 32.10 ATOM 8 N LEU A 317 8.021 -3.019 18.306 1.00 23.84 ATOM 9 CA LEU A 317 8.119 -3.084 16.850 1.00 23.37 ATOM 10 C LEU A 317 6.950 -3.866 16.256 1.00 27.63 ATOM 11 O LEU A 317 6.596 -4.950 16.732 1.00 26.04 ATOM 12 CB LEU A 317 9.442 -3.722 16.452 1.00 22.64 ATOM 13 CG LEU A 317 10.693 -3.004 16.921 1.00 19.74 ATOM 14 CD1 LEU A 317 11.931 -3.847 16.631 1.00 20.97 ATOM 15 CD2 LEU A 317 10.786 -1.690 16.165 1.00 23.41 ATOM 16 N ARG A 318 6.335 -3.295 15.229 1.00 25.99 ATOM 17 CA ARG A 318 5.226 -3.924 14.532 1.00 24.95 ATOM 18 C ARG A 318 5.421 -3.761 13.040 1.00 23.57 ATOM 19 O ARG A 318 5.683 -2.651 12.575 1.00 22.57 ATOM 20 CB ARG A 318 3.896 -3.290 14.928 1.00 25.13 ATOM 21 CG ARG A 318 2.696 -3.948 14.280 1.00 32.26 ATOM 22 CD ARG A 318 1.374 -3.302 14.702 1.00 38.82 ATOM 23 NE ARG A 318 1.061 -3.462 16.122 1.00 40.84 ATOM 24 CZ ARG A 318 0.425 -4.505 16.659 1.00 44.47 ATOM 25 NH1 ARG A 318 0.026 -5.530 15.913 1.00 42.31 ATOM 26 NH2 ARG A 318 0.178 -4.519 17.963 1.00 46.87 ATOM 27 N CYS A 319 5.279 -4.848 12.291 1.00 24.39 ATOM 28 CA CYS A 319 5.393 -4.767 10.837 1.00 23.95 ATOM 29 C CYS A 319 4.294 -3.883 10.255 1.00 22.25 ATOM 30 O CYS A 319 3.128 -3.964 10.653 1.00 24.67 ATOM 31 CB CYS A 319 5.320 -6.164 10.226 1.00 25.62 ATOM 32 SG CYS A 319 5.380 -6.185 8.429 1.00 27.45 ATOM 33 N HIS A 320 4.675 -3.019 9.317 1.00 21.36 ATOM 34 CA HIS A 320 3.715 -2.131 8.677 1.00 26.67 ATOM 35 C HIS A 320 2.854 -2.815 7.625 1.00 28.38 ATOM 36 O HIS A 320 1.826 -2.245 7.232 1.00 29.11 ATOM 37 CB HIS A 320 4.439 -0.948 8.026 1.00 20.61 ATOM 38 CG HIS A 320 5.394 -1.329 6.929 1.00 19.84 ATOM 39 ND1 HIS A 320 6.353 -2.305 7.078 1.00 23.66 ATOM 40 CD2 HIS A 320 5.587 -0.804 5.690 1.00 19.47 ATOM 41 CE1 HIS A 320 7.060 -2.401 5.965 1.00 20.39 ATOM 42 NE2 HIS A 320 6.616 -1.500 5.106 1.00 18.88 ATOM 43 N GLU A 321 3.248 -3.998 7.146 1.00 26.30 ATOM 44 CA GLU A 321 2.489 -4.694 6.105 1.00 28.38 ATOM 45 C GLU A 321 1.516 -5.734 6.650 1.00 29.23 ATOM 46 O GLU A 321 0.440 -5.924 6.076 1.00 35.85 ATOM 47 CB GLU A 321 3.443 -5.358 5.107 1.00 31.48 ATOM 48 CG GLU A 321 4.383 -4.372 4.453 1.00 44.10 ATOM 49 CD GLU A 321 3.732 -3.608 3.314 1.00 70.57 ATOM 50 OE1 GLU A 321 2.483 -3.572 3.244 1.00 90.08 ATOM 51 OE2 GLU A 321 4.469 -3.009 2.509 1.00 65.45 ATOM 52 N CYS A 322 1.857 -6.434 7.733 1.00 26.99 ATOM 53 CA CYS A 322 0.980 -7.465 8.253 1.00 29.10 ATOM 54 C CYS A 322 0.681 -7.307 9.738 1.00 30.30 ATOM 55 O CYS A 322 -0.028 -8.148 10.297 1.00 31.42 ATOM 56 CB CYS A 322 1.590 -8.846 7.991 1.00 34.36 ATOM 57 SG CYS A 322 3.042 -9.233 9.010 1.00 28.90 ATOM 58 N GLN A 323 1.211 -6.268 10.396 1.00 32.49 ATOM 59 CA GLN A 323 0.952 -5.959 11.802 1.00 31.07 ATOM 60 C GLN A 323 1.506 -6.988 12.783 1.00 33.18 ATOM 61 O GLN A 323 1.106 -6.990 13.948 1.00 40.74 ATOM 62 CB GLN A 323 -0.552 -5.783 12.067 1.00 37.53 ATOM 63 CG GLN A 323 -1.168 -4.542 11.411 1.00 35.03 ATOM 64 CD GLN A 323 -1.039 -4.501 9.886 1.00 35.29 ATOM 65 OE1 GLN A 323 -1.575 -5.353 9.177 1.00 40.90 ATOM 66 NE2 GLN A 323 -0.344 -3.482 9.379 1.00 36.04 ATOM 67 N GLN A 324 2.398 -7.872 12.356 1.00 31.86 ATOM 68 CA GLN A 324 3.030 -8.795 13.286 1.00 29.72 ATOM 69 C GLN A 324 3.980 -8.035 14.216 1.00 28.19 ATOM 70 O GLN A 324 4.663 -7.095 13.799 1.00 24.87 ATOM 71 CB GLN A 324 3.789 -9.874 12.510 1.00 27.48 ATOM 72 CG GLN A 324 4.553 -10.861 13.372 1.00 34.02 ATOM 73 CD GLN A 324 4.996 -12.109 12.605 1.00 42.11 ATOM 74 OE1 GLN A 324 4.452 -12.442 11.546 1.00 39.97 ATOM 75 NE2 GLN A 324 6.002 -12.796 13.137 1.00 44.40 ATOM 76 N LEU A 325 4.011 -8.432 15.487 1.00 31.21 ATOM 77 CA LEU A 325 4.933 -7.850 16.464 1.00 32.11 ATOM 78 C LEU A 325 6.276 -8.568 16.394 1.00 29.53 ATOM 79 O LEU A 325 6.320 -9.796 16.358 1.00 30.99 ATOM 80 CB LEU A 325 4.364 -7.948 17.883 1.00 32.99 ATOM 81 CG LEU A 325 3.160 -7.048 18.151 1.00 35.10 ATOM 82 CD1 LEU A 325 2.319 -7.617 19.285 1.00 36.55 ATOM 83 CD2 LEU A 325 3.620 -5.638 18.493 1.00 32.35 ATOM 84 N LEU A 326 7.367 -7.802 16.361 1.00 29.92 ATOM 85 CA LEU A 326 8.716 -8.359 16.310 1.00 29.25 ATOM 86 C LEU A 326 9.541 -7.900 17.512 1.00 25.24 ATOM 87 O LEU A 326 9.433 -6.738 17.925 1.00 30.70 ATOM 88 CB LEU A 326 9.438 -7.934 15.015 1.00 28.73 ATOM 89 CG LEU A 326 9.170 -8.701 13.711 1.00 34.02 ATOM 90 CD1 LEU A 326 9.389 -10.218 13.881 1.00 41.09 ATOM 91 CD2 LEU A 326 7.821 -8.419 13.136 1.00 29.93 ATOM 92 N PRO A 327 10.390 -8.767 18.082 1.00 32.84 ATOM 93 CA PRO A 327 11.099 -8.398 19.315 1.00 27.59 ATOM 94 C PRO A 327 12.358 -7.562 19.111 1.00 29.70 ATOM 95 O PRO A 327 12.861 -6.993 20.087 1.00 32.57 ATOM 96 CB PRO A 327 11.426 -9.761 19.937 1.00 35.30 ATOM 97 CG PRO A 327 11.561 -10.663 18.804 1.00 38.73 ATOM 98 CD PRO A 327 10.601 -10.184 17.752 1.00 30.87 ATOM 99 N SER A 328 12.897 -7.459 17.905 1.00 22.41 ATOM 100 CA SER A 328 14.152 -6.739 17.744 1.00 29.18 ATOM 101 C SER A 328 14.290 -6.274 16.313 1.00 24.38 ATOM 102 O SER A 328 13.671 -6.823 15.401 1.00 22.79 ATOM 103 CB SER A 328 15.363 -7.604 18.096 1.00 33.26 ATOM 104 OG SER A 328 15.687 -8.462 17.019 1.00 29.44 ATOM 105 N ILE A 329 15.197 -5.316 16.126 1.00 27.27 ATOM 106 CA ILE A 329 15.462 -4.793 14.787 1.00 24.60 ATOM 107 C ILE A 329 15.976 -5.883 13.853 1.00 20.96 ATOM 108 O ILE A 329 15.447 -6.008 12.737 1.00 24.61 ATOM 109 CB ILE A 329 16.409 -3.583 14.882 1.00 25.27 ATOM 110 CG1 ILE A 329 15.664 -2.392 15.480 1.00 27.18 ATOM 111 CG2 ILE A 329 16.995 -3.209 13.522 1.00 19.50 ATOM 112 CD1 ILE A 329 14.529 -1.815 14.600 1.00 24.86 ATOM 113 N PRO A 330 16.975 -6.686 14.221 1.00 30.52 ATOM 114 CA PRO A 330 17.409 -7.767 13.311 1.00 29.94 ATOM 115 C PRO A 330 16.281 -8.699 12.883 1.00 25.29 ATOM 116 O PRO A 330 16.227 -9.112 11.718 1.00 29.82 ATOM 117 CB PRO A 330 18.474 -8.506 14.135 1.00 33.03 ATOM 118 CG PRO A 330 19.015 -7.462 15.081 1.00 33.07 ATOM 119 CD PRO A 330 17.858 -6.554 15.400 1.00 31.50 ATOM 120 N GLN A 331 15.405 -9.086 13.807 1.00 21.51 ATOM 121 CA GLN A 331 14.310 -9.978 13.450 1.00 33.21 ATOM 122 C GLN A 331 13.273 -9.263 12.606 1.00 28.66 ATOM 123 O GLN A 331 12.628 -9.892 11.757 1.00 24.14 ATOM 124 CB GLN A 331 13.669 -10.553 14.706 1.00 31.46 ATOM 125 CG GLN A 331 14.605 -11.498 15.474 1.00 33.80 ATOM 126 CD GLN A 331 13.938 -12.081 16.687 1.00 38.93 ATOM 127 OE1 GLN A 331 14.471 -12.025 17.789 1.00 46.64 ATOM 128 NE2 GLN A 331 12.751 -12.628 16.496 1.00 42.09 ATOM 129 N LEU A 332 13.093 -7.961 12.826 1.00 23.17 ATOM 130 CA LEU A 332 12.214 -7.194 11.950 1.00 20.06 ATOM 131 C LEU A 332 12.785 -7.137 10.548 1.00 21.95 ATOM 132 O LEU A 332 12.077 -7.377 9.567 1.00 24.56 ATOM 133 CB LEU A 332 11.994 -5.788 12.505 1.00 24.73 ATOM 134 CG LEU A 332 11.194 -4.831 11.618 1.00 19.62 ATOM 135 CD1 LEU A 332 9.816 -5.381 11.339 1.00 27.63 ATOM 136 CD2 LEU A 332 11.101 -3.478 12.275 1.00 22.41 ATOM 137 N LYS A 333 14.070 -6.842 10.423 1.00 20.67 ATOM 138 CA LYS A 333 14.661 -6.841 9.096 1.00 22.77 ATOM 139 C LYS A 333 14.535 -8.211 8.443 1.00 22.72 ATOM 140 O LYS A 333 14.270 -8.312 7.240 1.00 24.26 ATOM 141 CB LYS A 333 16.115 -6.408 9.181 1.00 23.12 ATOM 142 CG LYS A 333 16.298 -4.911 9.509 1.00 28.32 ATOM 143 CD LYS A 333 17.778 -4.557 9.701 1.00 33.81 ATOM 144 CE LYS A 333 17.999 -3.078 10.091 1.00 31.43 ATOM 145 NZ LYS A 333 18.452 -2.236 8.982 1.00 27.94 ATOM 146 N GLU A 334 14.707 -9.286 9.208 1.00 22.20 ATOM 147 CA GLU A 334 14.523 -10.612 8.612 1.00 30.64 ATOM 148 C GLU A 334 13.061 -10.834 8.229 1.00 30.08 ATOM 149 O GLU A 334 12.761 -11.352 7.147 1.00 23.88 ATOM 150 CB GLU A 334 15.018 -11.711 9.560 1.00 41.13 ATOM 151 CG GLU A 334 14.708 -13.146 9.070 1.00 62.34 ATOM 152 CD GLU A 334 15.694 -13.647 8.025 1.00 78.35 ATOM 153 OE1 GLU A 334 16.592 -12.869 7.627 1.00 67.45 ATOM 154 OE2 GLU A 334 15.533 -14.800 7.561 1.00 91.72 ATOM 155 N HIS A 335 12.138 -10.437 9.097 1.00 22.18 ATOM 156 CA HIS A 335 10.724 -10.592 8.786 1.00 24.40 ATOM 157 C HIS A 335 10.349 -9.868 7.492 1.00 22.07 ATOM 158 O HIS A 335 9.580 -10.391 6.684 1.00 23.19 ATOM 159 CB HIS A 335 9.885 -10.073 9.948 1.00 24.01 ATOM 160 CG HIS A 335 8.437 -9.928 9.613 1.00 27.60 ATOM 161 ND1 HIS A 335 7.525 -10.946 9.795 1.00 27.63 ATOM 162 CD2 HIS A 335 7.750 -8.893 9.077 1.00 24.47 ATOM 163 CE1 HIS A 335 6.335 -10.539 9.391 1.00 30.29 ATOM 164 NE2 HIS A 335 6.445 -9.298 8.948 1.00 26.28 ATOM 165 N LEU A 336 10.885 -8.671 7.275 1.00 21.90 ATOM 166 CA LEU A 336 10.522 -7.854 6.110 1.00 27.64 ATOM 167 C LEU A 336 10.841 -8.526 4.777 1.00 24.64 ATOM 168 O LEU A 336 10.264 -8.165 3.755 1.00 24.75 ATOM 169 CB LEU A 336 11.223 -6.496 6.184 1.00 18.80 ATOM 170 CG LEU A 336 10.642 -5.559 7.257 1.00 25.70 ATOM 171 CD1 LEU A 336 11.401 -4.228 7.274 1.00 22.05 ATOM 172 CD2 LEU A 336 9.138 -5.342 7.108 1.00 20.28 ATOM 173 N ARG A 337 11.755 -9.480 4.764 1.00 21.85 ATOM 174 CA ARG A 337 12.070 -10.204 3.546 1.00 21.26 ATOM 175 C ARG A 337 10.887 -11.017 3.047 1.00 28.90 ATOM 176 O ARG A 337 10.836 -11.360 1.863 1.00 33.37 ATOM 177 CB ARG A 337 13.266 -11.122 3.817 1.00 21.74 ATOM 178 CG ARG A 337 14.511 -10.332 4.198 1.00 27.71 ATOM 179 CD ARG A 337 15.561 -11.240 4.774 1.00 36.73 ATOM 180 NE ARG A 337 16.006 -12.213 3.800 1.00 37.72 ATOM 181 CZ ARG A 337 16.947 -11.985 2.892 1.00 49.98 ATOM 182 NH1 ARG A 337 17.572 -10.812 2.824 1.00 41.57 ATOM 183 NH2 ARG A 337 17.273 -12.941 2.053 1.00 62.88 ATOM 184 N LYS A 338 9.935 -11.330 3.922 1.00 24.74 ATOM 185 CA LYS A 338 8.735 -12.056 3.514 1.00 30.91 ATOM 186 C LYS A 338 7.849 -11.208 2.622 1.00 24.33 ATOM 187 O LYS A 338 7.035 -11.752 1.869 1.00 32.88 ATOM 188 CB LYS A 338 7.924 -12.520 4.746 1.00 35.77 ATOM 189 CG LYS A 338 8.514 -13.737 5.502 1.00 66.94 ATOM 190 CD LYS A 338 9.850 -13.449 6.218 1.00 83.59 ATOM 191 CE LYS A 338 10.745 -14.690 6.309 1.00 83.10 ATOM 192 NZ LYS A 338 12.166 -14.352 6.671 1.00 75.64 ATOM 193 N HIS A 339 7.981 -9.891 2.698 1.00 23.03 ATOM 194 CA HIS A 339 7.169 -8.978 1.914 1.00 29.16 ATOM 195 C HIS A 339 7.880 -8.469 0.664 1.00 33.42 ATOM 196 O HIS A 339 7.440 -7.471 0.082 1.00 38.05 ATOM 197 CB HIS A 339 6.722 -7.817 2.805 1.00 23.63 ATOM 198 CG HIS A 339 5.978 -8.267 4.023 1.00 23.08 ATOM 199 ND1 HIS A 339 4.806 -8.993 3.950 1.00 27.66 ATOM 200 CD2 HIS A 339 6.242 -8.113 5.342 1.00 24.38 ATOM 201 CE1 HIS A 339 4.379 -9.266 5.173 1.00 27.13 ATOM 202 NE2 HIS A 339 5.231 -8.744 6.038 1.00 24.40 ATOM 203 N TRP A 340 8.946 -9.142 0.220 1.00 32.84 ATOM 204 CA TRP A 340 9.636 -8.747 -1.018 1.00 29.92 ATOM 205 C TRP A 340 8.688 -8.721 -2.220 1.00 24.82 ATOM 206 O TRP A 340 7.703 -9.467 -2.262 1.00 37.47 ATOM 207 CB TRP A 340 10.803 -9.688 -1.307 1.00 24.16 ATOM 208 CG TRP A 340 12.074 -9.378 -0.568 1.00 24.69 ATOM 209 CD1 TRP A 340 12.268 -8.408 0.389 1.00 24.28 ATOM 210 CD2 TRP A 340 13.337 -10.034 -0.731 1.00 27.36 ATOM 211 NE1 TRP A 340 13.573 -8.421 0.813 1.00 25.60 ATOM 212 CE2 TRP A 340 14.245 -9.417 0.151 1.00 22.56 ATOM 213 CE3 TRP A 340 13.789 -11.088 -1.542 1.00 24.57 ATOM 214 CZ2 TRP A 340 15.575 -9.818 0.241 1.00 28.39 ATOM 215 CZ3 TRP A 340 15.080 -11.482 -1.447 1.00 22.86 ATOM 216 CH2 TRP A 340 15.972 -10.857 -0.567 1.00 26.14 TER