HEADER HYDROLASE/DNA/RNA 31-DEC-69 6CVP TITLE Human Aprataxin (Aptx) R199H bound to RNA-DNA, AMP and Zn product TITLE 2 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Aprataxin; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.1.11.7,3.1.12.2; COMPND 6 FRAGMENT: Aprataxin catalytic ; COMPND 7 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.00 ANGSTORMS DBREF 6CVP B 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 SEQRES 1 B 25 PRO LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER SEQRES 2 B 25 ILE PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP ATOM 1 N PRO B 316 -19.911 29.242 50.228 1.00 25.33 ATOM 2 CA PRO B 316 -19.582 30.663 50.342 1.00 22.58 ATOM 3 C PRO B 316 -18.198 30.852 50.945 1.00 31.73 ATOM 4 O PRO B 316 -17.706 30.004 51.700 1.00 22.63 ATOM 5 CB PRO B 316 -20.684 31.212 51.262 1.00 30.40 ATOM 6 CG PRO B 316 -21.835 30.274 51.084 1.00 36.76 ATOM 7 CD PRO B 316 -21.210 28.918 50.850 1.00 36.10 ATOM 8 N LEU B 317 -17.562 31.963 50.557 1.00 23.02 ATOM 9 CA LEU B 317 -16.188 32.252 50.944 1.00 22.75 ATOM 10 C LEU B 317 -16.065 32.607 52.423 1.00 23.15 ATOM 11 O LEU B 317 -16.690 33.569 52.885 1.00 29.67 ATOM 12 CB LEU B 317 -15.676 33.415 50.112 1.00 22.90 ATOM 13 CG LEU B 317 -15.769 33.254 48.609 1.00 22.64 ATOM 14 CD1 LEU B 317 -15.332 34.565 47.921 1.00 23.51 ATOM 15 CD2 LEU B 317 -14.914 32.100 48.145 1.00 22.53 ATOM 16 N ARG B 318 -15.166 31.925 53.139 1.00 23.27 ATOM 17 CA ARG B 318 -14.893 32.271 54.532 1.00 27.02 ATOM 18 C ARG B 318 -13.395 32.366 54.771 1.00 29.21 ATOM 19 O ARG B 318 -12.649 31.452 54.406 1.00 23.96 ATOM 20 CB ARG B 318 -15.501 31.249 55.494 1.00 30.37 ATOM 21 CG ARG B 318 -16.986 31.421 55.660 1.00 40.33 ATOM 22 CD ARG B 318 -17.488 30.738 56.902 1.00 35.44 ATOM 23 NE ARG B 318 -18.938 30.853 57.038 1.00 29.82 ATOM 24 CZ ARG B 318 -19.571 31.816 57.707 1.00 33.75 ATOM 25 NH1 ARG B 318 -18.887 32.785 58.305 1.00 29.80 ATOM 26 NH2 ARG B 318 -20.908 31.814 57.783 1.00 38.02 ATOM 27 N CYS B 319 -12.960 33.456 55.412 1.00 26.15 ATOM 28 CA CYS B 319 -11.551 33.604 55.752 1.00 25.35 ATOM 29 C CYS B 319 -11.117 32.463 56.667 1.00 25.39 ATOM 30 O CYS B 319 -11.827 32.098 57.601 1.00 25.40 ATOM 31 CB CYS B 319 -11.303 34.952 56.437 1.00 26.26 ATOM 32 SG CYS B 319 -9.590 35.191 57.057 1.00 27.32 ATOM 33 N HIS B 320 -9.944 31.884 56.380 1.00 25.53 ATOM 34 CA HIS B 320 -9.409 30.788 57.191 1.00 25.69 ATOM 35 C HIS B 320 -8.812 31.256 58.512 1.00 29.45 ATOM 36 O HIS B 320 -8.612 30.435 59.409 1.00 28.70 ATOM 37 CB HIS B 320 -8.338 30.008 56.414 1.00 27.07 ATOM 38 CG HIS B 320 -7.117 30.810 56.059 1.00 26.91 ATOM 39 ND1 HIS B 320 -7.181 32.033 55.427 1.00 26.65 ATOM 40 CD2 HIS B 320 -5.794 30.542 56.228 1.00 32.50 ATOM 41 CE1 HIS B 320 -5.953 32.493 55.241 1.00 37.06 ATOM 42 NE2 HIS B 320 -5.092 31.606 55.713 1.00 27.91 ATOM 43 N GLU B 321 -8.550 32.548 58.677 1.00 27.24 ATOM 44 CA GLU B 321 -7.944 33.014 59.921 1.00 29.47 ATOM 45 C GLU B 321 -8.993 33.424 60.947 1.00 28.97 ATOM 46 O GLU B 321 -8.795 33.210 62.150 1.00 30.91 ATOM 47 CB GLU B 321 -7.005 34.200 59.635 1.00 32.87 ATOM 48 CG GLU B 321 -5.871 33.921 58.659 1.00 44.92 ATOM 49 CD GLU B 321 -4.658 33.329 59.322 1.00 71.95 ATOM 50 OE1 GLU B 321 -4.790 32.777 60.434 1.00 83.92 ATOM 51 OE2 GLU B 321 -3.559 33.457 58.745 1.00 85.66 ATOM 52 N CYS B 322 -10.118 34.007 60.498 1.00 30.46 ATOM 53 CA CYS B 322 -11.152 34.489 61.412 1.00 28.43 ATOM 54 C CYS B 322 -12.581 34.034 61.089 1.00 27.64 ATOM 55 O CYS B 322 -13.511 34.429 61.808 1.00 28.07 ATOM 56 CB CYS B 322 -11.121 36.027 61.460 1.00 29.34 ATOM 57 SG CYS B 322 -11.731 36.827 59.929 1.00 28.79 ATOM 58 N GLN B 323 -12.788 33.236 60.036 1.00 26.68 ATOM 59 CA GLN B 323 -14.077 32.671 59.643 1.00 26.06 ATOM 60 C GLN B 323 -15.074 33.722 59.184 1.00 26.12 ATOM 61 O GLN B 323 -16.254 33.412 59.026 1.00 25.87 ATOM 62 CB GLN B 323 -14.706 31.855 60.774 1.00 26.31 ATOM 63 CG GLN B 323 -13.902 30.618 61.171 1.00 33.71 ATOM 64 CD GLN B 323 -13.541 29.750 59.968 1.00 29.38 ATOM 65 OE1 GLN B 323 -14.403 29.376 59.179 1.00 28.21 ATOM 66 NE2 GLN B 323 -12.260 29.458 59.814 1.00 30.36 ATOM 67 N GLN B 324 -14.631 34.939 58.907 1.00 29.93 ATOM 68 CA GLN B 324 -15.547 35.958 58.417 1.00 35.52 ATOM 69 C GLN B 324 -16.026 35.597 57.014 1.00 30.95 ATOM 70 O GLN B 324 -15.244 35.160 56.163 1.00 26.76 ATOM 71 CB GLN B 324 -14.855 37.322 58.422 1.00 49.10 ATOM 72 CG GLN B 324 -15.685 38.474 57.851 1.00 69.29 ATOM 73 CD GLN B 324 -15.165 39.851 58.276 1.00 74.25 ATOM 74 OE1 GLN B 324 -14.463 39.986 59.292 1.00 69.21 ATOM 75 NE2 GLN B 324 -15.484 40.872 57.479 1.00 70.58 ATOM 76 N LEU B 325 -17.309 35.833 56.760 1.00 25.76 ATOM 77 CA LEU B 325 -17.884 35.578 55.447 1.00 29.85 ATOM 78 C LEU B 325 -17.599 36.758 54.512 1.00 25.21 ATOM 79 O LEU B 325 -17.826 37.915 54.877 1.00 25.95 ATOM 80 CB LEU B 325 -19.392 35.354 55.583 1.00 29.67 ATOM 81 CG LEU B 325 -20.165 35.070 54.297 1.00 40.49 ATOM 82 CD1 LEU B 325 -19.962 33.637 53.856 1.00 37.93 ATOM 83 CD2 LEU B 325 -21.641 35.375 54.475 1.00 48.22 ATOM 84 N LEU B 326 -17.099 36.462 53.305 1.00 26.15 ATOM 85 CA LEU B 326 -16.789 37.480 52.303 1.00 28.96 ATOM 86 C LEU B 326 -17.606 37.247 51.037 1.00 28.85 ATOM 87 O LEU B 326 -17.791 36.098 50.619 1.00 28.30 ATOM 88 CB LEU B 326 -15.295 37.489 51.925 1.00 32.40 ATOM 89 CG LEU B 326 -14.337 38.251 52.848 1.00 40.51 ATOM 90 CD1 LEU B 326 -14.777 39.724 53.046 1.00 47.36 ATOM 91 CD2 LEU B 326 -14.206 37.524 54.169 1.00 41.99 ATOM 92 N PRO B 327 -18.090 38.313 50.395 1.00 30.50 ATOM 93 CA PRO B 327 -19.034 38.128 49.281 1.00 36.41 ATOM 94 C PRO B 327 -18.400 37.817 47.929 1.00 36.17 ATOM 95 O PRO B 327 -19.119 37.360 47.018 1.00 30.01 ATOM 96 CB PRO B 327 -19.775 39.469 49.237 1.00 32.75 ATOM 97 CG PRO B 327 -18.786 40.447 49.743 1.00 36.69 ATOM 98 CD PRO B 327 -17.946 39.727 50.774 1.00 35.41 ATOM 99 N SER B 328 -17.094 38.034 47.769 1.00 23.94 ATOM 100 CA SER B 328 -16.466 37.891 46.464 1.00 23.80 ATOM 101 C SER B 328 -14.986 37.624 46.652 1.00 24.03 ATOM 102 O SER B 328 -14.433 37.868 47.724 1.00 24.42 ATOM 103 CB SER B 328 -16.654 39.153 45.627 1.00 24.28 ATOM 104 OG SER B 328 -15.724 40.151 46.058 1.00 27.41 ATOM 105 N ILE B 329 -14.359 37.122 45.572 1.00 22.99 ATOM 106 CA ILE B 329 -12.916 36.867 45.587 1.00 25.51 ATOM 107 C ILE B 329 -12.118 38.158 45.773 1.00 24.11 ATOM 108 O ILE B 329 -11.239 38.195 46.648 1.00 26.91 ATOM 109 CB ILE B 329 -12.508 36.085 44.323 1.00 23.40 ATOM 110 CG1 ILE B 329 -12.936 34.617 44.430 1.00 28.87 ATOM 111 CG2 ILE B 329 -11.012 36.210 44.024 1.00 27.00 ATOM 112 CD1 ILE B 329 -12.215 33.812 45.504 1.00 24.68 ATOM 113 N PRO B 330 -12.364 39.224 45.022 1.00 24.88 ATOM 114 CA PRO B 330 -11.632 40.475 45.290 1.00 28.41 ATOM 115 C PRO B 330 -11.721 40.950 46.736 1.00 32.65 ATOM 116 O PRO B 330 -10.711 41.367 47.325 1.00 30.78 ATOM 117 CB PRO B 330 -12.294 41.471 44.323 1.00 32.83 ATOM 118 CG PRO B 330 -12.770 40.617 43.178 1.00 38.31 ATOM 119 CD PRO B 330 -13.169 39.295 43.786 1.00 37.00 ATOM 120 N GLN B 331 -12.910 40.894 47.330 1.00 29.66 ATOM 121 CA GLN B 331 -13.055 41.324 48.715 1.00 28.14 ATOM 122 C GLN B 331 -12.398 40.355 49.679 1.00 30.25 ATOM 123 O GLN B 331 -11.900 40.765 50.736 1.00 27.52 ATOM 124 CB GLN B 331 -14.527 41.469 49.048 1.00 27.80 ATOM 125 CG GLN B 331 -15.189 42.619 48.305 1.00 39.58 ATOM 126 CD GLN B 331 -16.632 42.782 48.691 1.00 45.27 ATOM 127 OE1 GLN B 331 -17.518 42.799 47.837 1.00 46.68 ATOM 128 NE2 GLN B 331 -16.880 42.902 49.978 1.00 47.11 ATOM 129 N LEU B 332 -12.379 39.072 49.340 1.00 25.59 ATOM 130 CA LEU B 332 -11.646 38.121 50.161 1.00 28.90 ATOM 131 C LEU B 332 -10.156 38.430 50.146 1.00 26.51 ATOM 132 O LEU B 332 -9.512 38.483 51.200 1.00 28.07 ATOM 133 CB LEU B 332 -11.913 36.703 49.662 1.00 26.83 ATOM 134 CG LEU B 332 -11.109 35.619 50.348 1.00 25.14 ATOM 135 CD1 LEU B 332 -11.416 35.604 51.853 1.00 26.96 ATOM 136 CD2 LEU B 332 -11.437 34.284 49.710 1.00 29.60 ATOM 137 N LYS B 333 -9.598 38.667 48.955 1.00 28.68 ATOM 138 CA LYS B 333 -8.180 38.999 48.828 1.00 28.01 ATOM 139 C LYS B 333 -7.830 40.255 49.606 1.00 32.09 ATOM 140 O LYS B 333 -6.746 40.349 50.198 1.00 36.41 ATOM 141 CB LYS B 333 -7.806 39.202 47.361 1.00 28.24 ATOM 142 CG LYS B 333 -7.759 37.931 46.523 1.00 32.27 ATOM 143 CD LYS B 333 -7.391 38.290 45.062 1.00 33.89 ATOM 144 CE LYS B 333 -7.330 37.055 44.172 1.00 33.64 ATOM 145 NZ LYS B 333 -5.914 36.629 44.049 1.00 35.68 ATOM 146 N GLU B 334 -8.713 41.255 49.572 1.00 29.35 ATOM 147 CA GLU B 334 -8.479 42.458 50.355 1.00 32.92 ATOM 148 C GLU B 334 -8.531 42.125 51.839 1.00 30.99 ATOM 149 O GLU B 334 -7.657 42.545 52.604 1.00 32.43 ATOM 150 CB GLU B 334 -9.518 43.526 49.980 1.00 32.09 ATOM 151 CG GLU B 334 -9.541 44.817 50.808 1.00 66.79 ATOM 152 CD GLU B 334 -8.529 45.871 50.349 1.00 75.78 ATOM 153 OE1 GLU B 334 -7.704 45.576 49.446 1.00 78.68 ATOM 154 OE2 GLU B 334 -8.594 47.009 50.875 1.00 61.03 ATOM 155 N HIS B 335 -9.522 41.323 52.248 1.00 29.71 ATOM 156 CA HIS B 335 -9.650 40.970 53.654 1.00 29.99 ATOM 157 C HIS B 335 -8.427 40.221 54.146 1.00 30.52 ATOM 158 O HIS B 335 -7.909 40.512 55.222 1.00 31.70 ATOM 159 CB HIS B 335 -10.896 40.128 53.882 1.00 28.89 ATOM 160 CG HIS B 335 -10.957 39.541 55.253 1.00 29.33 ATOM 161 ND1 HIS B 335 -11.543 40.197 56.318 1.00 33.51 ATOM 162 CD2 HIS B 335 -10.485 38.373 55.745 1.00 33.24 ATOM 163 CE1 HIS B 335 -11.446 39.445 57.401 1.00 35.79 ATOM 164 NE2 HIS B 335 -10.810 38.333 57.079 1.00 36.77 ATOM 165 N LEU B 336 -7.927 39.275 53.352 1.00 29.99 ATOM 166 CA LEU B 336 -6.792 38.469 53.784 1.00 30.93 ATOM 167 C LEU B 336 -5.566 39.311 54.122 1.00 34.54 ATOM 168 O LEU B 336 -4.764 38.916 54.974 1.00 38.89 ATOM 169 CB LEU B 336 -6.430 37.464 52.691 1.00 33.92 ATOM 170 CG LEU B 336 -7.320 36.232 52.574 1.00 29.52 ATOM 171 CD1 LEU B 336 -6.873 35.419 51.378 1.00 29.19 ATOM 172 CD2 LEU B 336 -7.212 35.420 53.835 1.00 29.87 ATOM 173 N ARG B 337 -5.415 40.478 53.503 1.00 40.39 ATOM 174 CA ARG B 337 -4.244 41.300 53.786 1.00 43.79 ATOM 175 C ARG B 337 -4.245 41.853 55.208 1.00 47.86 ATOM 176 O ARG B 337 -3.190 42.280 55.692 1.00 47.65 ATOM 177 CB ARG B 337 -4.144 42.430 52.764 1.00 46.84 ATOM 178 CG ARG B 337 -3.932 41.917 51.341 1.00 51.76 ATOM 179 CD ARG B 337 -4.064 43.028 50.318 1.00 58.62 ATOM 180 NE ARG B 337 -3.027 44.040 50.509 1.00 80.10 ATOM 181 CZ ARG B 337 -1.782 43.956 50.036 1.00 95.11 ATOM 182 NH1 ARG B 337 -1.402 42.898 49.328 1.00 99.26 ATOM 183 NH2 ARG B 337 -0.911 44.936 50.272 1.00 95.86 ATOM 184 N LYS B 338 -5.398 41.859 55.881 1.00 41.24 ATOM 185 CA LYS B 338 -5.451 42.278 57.277 1.00 43.68 ATOM 186 C LYS B 338 -4.686 41.322 58.194 1.00 51.55 ATOM 187 O LYS B 338 -4.266 41.737 59.274 1.00 56.27 ATOM 188 CB LYS B 338 -6.918 42.404 57.726 1.00 40.31 ATOM 189 CG LYS B 338 -7.728 43.413 56.890 1.00 53.73 ATOM 190 CD LYS B 338 -9.257 43.264 57.058 1.00 65.55 ATOM 191 CE LYS B 338 -9.804 43.930 58.335 1.00 66.03 ATOM 192 NZ LYS B 338 -11.312 43.930 58.384 1.00 59.05 ATOM 193 N HIS B 339 -4.473 40.066 57.785 1.00 44.17 ATOM 194 CA HIS B 339 -3.815 39.062 58.618 1.00 43.55 ATOM 195 C HIS B 339 -2.332 38.875 58.297 1.00 54.42 ATOM 196 O HIS B 339 -1.732 37.892 58.755 1.00 52.24 ATOM 197 CB HIS B 339 -4.531 37.712 58.478 1.00 39.83 ATOM 198 CG HIS B 339 -6.001 37.776 58.760 1.00 36.33 ATOM 199 ND1 HIS B 339 -6.511 38.218 59.962 1.00 35.04 ATOM 200 CD2 HIS B 339 -7.071 37.442 57.998 1.00 32.83 ATOM 201 CE1 HIS B 339 -7.832 38.165 59.922 1.00 33.86 ATOM 202 NE2 HIS B 339 -8.195 37.701 58.740 1.00 32.51 ATOM 203 N TRP B 340 -1.734 39.777 57.518 1.00 70.24 ATOM 204 CA TRP B 340 -0.334 39.607 57.138 0.58 81.32 ATOM 205 C TRP B 340 0.595 39.883 58.326 1.00 85.99 ATOM 206 O TRP B 340 1.123 40.979 58.526 1.00 84.01 ATOM 207 CB TRP B 340 0.012 40.502 55.945 0.58 86.67 ATOM 208 CG TRP B 340 -0.417 39.910 54.610 0.58 89.58 ATOM 209 CD1 TRP B 340 -1.213 38.809 54.410 0.58 87.00 ATOM 210 CD2 TRP B 340 -0.064 40.386 53.302 0.58 90.56 ATOM 211 NE1 TRP B 340 -1.377 38.579 53.063 0.58 83.71 ATOM 212 CE2 TRP B 340 -0.684 39.531 52.362 0.58 86.36 ATOM 213 CE3 TRP B 340 0.713 41.452 52.834 0.58 92.46 ATOM 214 CZ2 TRP B 340 -0.550 39.710 50.986 0.58 84.91 ATOM 215 CZ3 TRP B 340 0.846 41.626 51.465 0.58 90.53 ATOM 216 CH2 TRP B 340 0.219 40.758 50.559 0.58 87.63 TER