HEADER Hydrolase/DNA 31-DEC-69 6EO6 TITLE X-ray structure of the complex between human alpha-thrombin and TITLE 2 modified 15-mer DNA aptamer containing TITLE 3 5-(3-(2-(1H-indol-3-yl)acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine COMPND MOL_ID: 2; COMPND 2 MOLECULE: Prothrombin; COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.69 ANGSTORMS DBREF 6EO6 L 328 363 UNP P00734 THRB_HUMAN 328 363 SEQRES 1 L 29 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 L 29 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 L 29 TYR ILE ASP ATOM 1 N GLU L 333 -54.996 25.508 24.720 1.00 61.26 ATOM 2 CA GLU L 333 -55.776 26.540 23.944 1.00 55.10 ATOM 3 C GLU L 333 -56.751 26.015 22.801 1.00 59.03 ATOM 4 O GLU L 333 -57.831 26.631 22.659 1.00 61.85 ATOM 5 CB GLU L 333 -54.832 27.593 23.366 1.00 45.38 ATOM 6 CG GLU L 333 -55.556 28.850 22.899 1.00 48.63 ATOM 7 CD GLU L 333 -56.123 29.937 23.882 1.00 58.54 ATOM 8 OE1 GLU L 333 -55.779 31.029 23.417 1.00 53.18 ATOM 9 OE2 GLU L 333 -57.011 29.886 24.886 1.00 43.83 ATOM 10 N ALA L 334 -56.340 24.961 21.994 1.00 60.13 ATOM 11 CA ALA L 334 -57.174 24.253 20.884 1.00 47.42 ATOM 12 C ALA L 334 -57.505 25.279 19.784 1.00 30.89 ATOM 13 O ALA L 334 -58.672 25.480 19.400 1.00 29.47 ATOM 14 CB ALA L 334 -58.459 23.716 21.525 1.00 48.44 ATOM 15 N ASP L 335 -56.521 26.091 19.426 1.00 26.50 ATOM 16 CA ASP L 335 -56.764 27.247 18.658 1.00 24.15 ATOM 17 C ASP L 335 -56.069 26.956 17.276 1.00 21.35 ATOM 18 O ASP L 335 -55.773 27.964 16.602 1.00 21.26 ATOM 19 CB ASP L 335 -56.456 28.759 19.274 1.00 27.25 ATOM 20 CG ASP L 335 -55.019 28.944 19.520 1.00 24.45 ATOM 21 OD1 ASP L 335 -54.339 27.877 19.514 1.00 29.02 ATOM 22 OD2 ASP L 335 -54.529 30.084 19.633 1.00 23.95 ATOM 23 N CYS L 336 -56.110 25.713 16.809 1.00 20.33 ATOM 24 CA CYS L 336 -55.604 25.480 15.404 1.00 21.51 ATOM 25 C CYS L 336 -56.390 26.324 14.430 1.00 20.89 ATOM 26 O CYS L 336 -57.578 26.574 14.604 1.00 19.49 ATOM 27 CB CYS L 336 -55.610 24.019 14.987 1.00 20.96 ATOM 28 SG CYS L 336 -57.290 23.322 14.764 1.00 24.90 ATOM 29 N GLY L 337 -55.749 26.795 13.344 1.00 19.89 ATOM 30 CA GLY L 337 -56.492 27.436 12.293 1.00 19.47 ATOM 31 C GLY L 337 -57.051 28.787 12.531 1.00 18.29 ATOM 32 O GLY L 337 -57.797 29.273 11.672 1.00 19.50 ATOM 33 N LEU L 338 -56.731 29.465 13.660 1.00 17.31 ATOM 34 CA LEU L 338 -57.125 30.781 13.959 1.00 18.78 ATOM 35 C LEU L 338 -55.924 31.632 14.005 1.00 18.76 ATOM 36 O LEU L 338 -55.024 31.436 14.864 1.00 19.37 ATOM 37 CB LEU L 338 -57.835 30.794 15.326 1.00 21.00 ATOM 38 CG LEU L 338 -59.126 29.963 15.346 1.00 22.65 ATOM 39 CD1 LEU L 338 -59.616 29.873 16.790 1.00 27.39 ATOM 40 CD2 LEU L 338 -60.192 30.572 14.447 1.00 21.83 ATOM 41 N ARG L 339 -55.820 32.553 13.053 1.00 17.95 ATOM 42 CA ARG L 339 -54.578 33.285 12.880 1.00 18.25 ATOM 43 C ARG L 339 -54.458 34.440 13.857 1.00 19.41 ATOM 44 O ARG L 339 -55.396 35.266 13.925 1.00 19.38 ATOM 45 CB ARG L 339 -54.493 33.874 11.501 1.00 18.32 ATOM 46 CG ARG L 339 -54.504 32.739 10.452 1.00 17.42 ATOM 47 CD ARG L 339 -54.573 33.272 9.035 1.00 17.57 ATOM 48 NE ARG L 339 -55.870 33.905 8.830 1.00 19.39 ATOM 49 CZ ARG L 339 -56.281 34.493 7.732 1.00 19.66 ATOM 50 NH1 ARG L 339 -55.454 34.581 6.725 1.00 19.01 ATOM 51 NH2 ARG L 339 -57.482 35.073 7.644 1.00 18.60 ATOM 52 N PRO L 340 -53.317 34.576 14.542 1.00 19.39 ATOM 53 CA PRO L 340 -53.149 35.695 15.431 1.00 20.66 ATOM 54 C PRO L 340 -53.386 37.038 14.833 1.00 22.74 ATOM 55 O PRO L 340 -53.933 37.920 15.507 1.00 22.69 ATOM 56 CB PRO L 340 -51.674 35.641 15.786 1.00 20.34 ATOM 57 CG PRO L 340 -51.406 34.144 15.821 1.00 20.99 ATOM 58 CD PRO L 340 -52.217 33.620 14.659 1.00 20.33 ATOM 59 N LEU L 341 -53.018 37.272 13.573 1.00 19.82 ATOM 60 CA LEU L 341 -53.187 38.575 13.000 1.00 20.18 ATOM 61 C LEU L 341 -54.476 38.831 12.230 1.00 21.68 ATOM 62 O LEU L 341 -54.651 39.937 11.712 1.00 21.71 ATOM 63 CB LEU L 341 -51.988 38.937 12.114 1.00 19.53 ATOM 64 CG LEU L 341 -50.671 38.980 12.850 1.00 21.99 ATOM 65 CD1 LEU L 341 -49.464 39.288 11.942 1.00 25.22 ATOM 66 CD2 LEU L 341 -50.691 40.055 13.924 1.00 26.57 ATOM 67 N PHE L 342 -55.378 37.876 12.193 1.00 19.69 ATOM 68 CA PHE L 342 -56.600 37.944 11.445 1.00 19.87 ATOM 69 C PHE L 342 -57.741 37.513 12.346 1.00 22.39 ATOM 70 O PHE L 342 -58.313 38.388 13.014 1.00 22.84 ATOM 71 CB PHE L 342 -56.447 37.160 10.143 1.00 20.51 ATOM 72 CG PHE L 342 -55.527 37.847 9.226 1.00 19.91 ATOM 73 CD1 PHE L 342 -55.958 38.991 8.521 1.00 20.38 ATOM 74 CD2 PHE L 342 -54.209 37.481 9.092 1.00 19.81 ATOM 75 CE1 PHE L 342 -55.084 39.704 7.749 1.00 22.43 ATOM 76 CE2 PHE L 342 -53.350 38.148 8.234 1.00 20.89 ATOM 77 CZ PHE L 342 -53.757 39.274 7.559 1.00 22.92 ATOM 78 N GLU L 343 -58.086 36.256 12.414 1.00 21.87 ATOM 79 CA GLU L 343 -59.256 35.787 13.161 1.00 19.99 ATOM 80 C GLU L 343 -59.181 36.290 14.630 1.00 23.96 ATOM 81 O GLU L 343 -60.209 36.773 15.199 1.00 22.98 ATOM 82 CB GLU L 343 -59.403 34.315 13.164 1.00 20.64 ATOM 83 CG GLU L 343 -59.904 33.748 11.866 1.00 21.49 ATOM 84 CD GLU L 343 -58.838 33.672 10.747 1.00 20.67 ATOM 85 OE1 GLU L 343 -59.244 33.674 9.557 1.00 20.92 ATOM 86 OE2 GLU L 343 -57.630 33.707 11.077 1.00 19.76 ATOM 87 N LYS L 344 -58.006 36.226 15.237 0.50 21.17 ATOM 88 CA LYS L 344 -57.911 36.645 16.643 0.50 21.82 ATOM 89 C LYS L 344 -58.058 38.157 16.872 0.50 25.58 ATOM 90 O LYS L 344 -58.258 38.609 18.011 0.50 27.67 ATOM 91 CB LYS L 344 -56.603 36.146 17.266 0.50 21.41 ATOM 92 CG LYS L 344 -56.373 34.639 17.244 0.50 22.70 ATOM 93 CD LYS L 344 -57.380 33.788 18.017 0.50 26.49 ATOM 94 CE LYS L 344 -57.531 34.184 19.486 0.50 29.38 ATOM 95 NZ LYS L 344 -58.573 33.309 20.131 0.50 33.35 ATOM 96 N LYS L 345 -57.970 38.949 15.821 1.00 23.97 ATOM 97 CA LYS L 345 -58.133 40.387 15.874 1.00 25.26 ATOM 98 C LYS L 345 -59.448 40.813 15.188 1.00 26.15 ATOM 99 O LYS L 345 -59.643 42.012 14.987 1.00 26.85 ATOM 100 CB LYS L 345 -56.946 41.064 15.234 1.00 27.47 ATOM 101 CG LYS L 345 -55.708 40.913 16.037 1.00 32.45 ATOM 102 CD LYS L 345 -54.595 41.732 15.472 1.00 35.11 ATOM 103 CE LYS L 345 -53.421 41.573 16.388 1.00 42.60 ATOM 104 NZ LYS L 345 -52.390 42.522 15.934 1.00 50.46 ATOM 105 N SER L 346 -60.294 39.886 14.792 1.00 25.78 ATOM 106 CA SER L 346 -61.524 40.181 14.040 1.00 28.57 ATOM 107 C SER L 346 -61.190 40.966 12.816 1.00 31.73 ATOM 108 O SER L 346 -61.954 41.876 12.424 1.00 28.05 ATOM 109 CB SER L 346 -62.564 40.966 14.952 1.00 31.59 ATOM 110 OG SER L 346 -62.902 40.111 16.009 1.00 33.46 ATOM 111 N LEU L 347 -60.061 40.625 12.143 1.00 24.69 ATOM 112 CA LEU L 347 -59.642 41.300 10.956 1.00 23.45 ATOM 113 C LEU L 347 -59.725 40.267 9.806 1.00 28.24 ATOM 114 O LEU L 347 -59.291 39.124 9.991 1.00 25.93 ATOM 115 CB LEU L 347 -58.225 41.819 10.973 1.00 25.23 ATOM 116 CG LEU L 347 -57.968 42.959 11.999 1.00 29.67 ATOM 117 CD1 LEU L 347 -56.505 43.339 12.047 1.00 33.80 ATOM 118 CD2 LEU L 347 -58.835 44.194 11.628 1.00 35.32 ATOM 119 N GLU L 348 -60.292 40.668 8.662 1.00 24.86 ATOM 120 CA GLU L 348 -60.313 39.811 7.445 1.00 28.43 ATOM 121 C GLU L 348 -59.123 40.086 6.582 1.00 24.17 ATOM 122 O GLU L 348 -58.584 41.231 6.444 1.00 24.49 ATOM 123 CB GLU L 348 -61.656 40.130 6.733 1.00 31.92 ATOM 124 CG GLU L 348 -62.196 39.256 5.726 1.00 49.63 ATOM 125 CD GLU L 348 -63.540 39.837 5.201 1.00 50.67 ATOM 126 OE1 GLU L 348 -63.559 40.270 4.030 1.00 46.64 ATOM 127 OE2 GLU L 348 -64.465 39.931 6.021 1.00 45.69 ATOM 128 N ASP L 349 -58.542 39.014 5.968 1.00 22.04 ATOM 129 CA ASP L 349 -57.502 39.230 5.006 1.00 22.10 ATOM 130 C ASP L 349 -58.133 39.722 3.664 1.00 22.41 ATOM 131 O ASP L 349 -59.365 39.634 3.509 1.00 24.30 ATOM 132 CB ASP L 349 -56.525 37.999 4.821 1.00 24.15 ATOM 133 CG ASP L 349 -57.125 36.823 4.152 1.00 21.51 ATOM 134 OD1 ASP L 349 -57.748 36.969 3.039 1.00 21.68 ATOM 135 OD2 ASP L 349 -57.033 35.657 4.655 1.00 22.36 ATOM 136 N LYS L 350 -57.297 40.069 2.714 1.00 24.44 ATOM 137 CA LYS L 350 -57.839 40.773 1.510 1.00 28.25 ATOM 138 C LYS L 350 -58.638 39.899 0.589 1.00 27.60 ATOM 139 O LYS L 350 -59.443 40.428 -0.194 1.00 28.26 ATOM 140 CB LYS L 350 -56.695 41.366 0.728 1.00 31.97 ATOM 141 CG LYS L 350 -56.044 42.584 1.388 1.00 40.65 ATOM 142 CD LYS L 350 -54.797 42.958 0.570 1.00 56.18 ATOM 143 CE LYS L 350 -53.865 43.941 1.278 1.00 68.14 ATOM 144 NZ LYS L 350 -54.551 45.235 1.520 1.00 75.35 ATOM 145 N THR L 351 -58.486 38.572 0.597 1.00 23.24 ATOM 146 CA THR L 351 -59.268 37.725 -0.305 1.00 23.98 ATOM 147 C THR L 351 -60.071 36.600 0.269 1.00 23.70 ATOM 148 O THR L 351 -60.719 35.782 -0.430 1.00 22.31 ATOM 149 CB THR L 351 -58.304 37.184 -1.399 1.00 25.71 ATOM 150 OG1 THR L 351 -57.419 36.211 -0.827 1.00 23.84 ATOM 151 CG2 THR L 351 -57.463 38.264 -2.084 1.00 28.36 ATOM 152 N GLU L 352 -60.130 36.470 1.605 1.00 21.66 ATOM 153 CA GLU L 352 -60.891 35.410 2.168 1.00 21.43 ATOM 154 C GLU L 352 -62.381 35.414 1.861 1.00 21.95 ATOM 155 O GLU L 352 -63.026 34.350 1.803 1.00 23.39 ATOM 156 CB GLU L 352 -60.701 35.267 3.700 1.00 22.70 ATOM 157 CG GLU L 352 -61.015 36.520 4.513 1.00 22.75 ATOM 158 CD GLU L 352 -60.915 36.205 6.015 1.00 23.33 ATOM 159 OE1 GLU L 352 -61.897 35.599 6.536 1.00 25.05 ATOM 160 OE2 GLU L 352 -59.844 36.566 6.586 1.00 22.83 ATOM 161 N ARG L 353 -62.881 36.613 1.602 1.00 23.87 ATOM 162 CA ARG L 353 -64.315 36.740 1.226 1.00 27.93 ATOM 163 C ARG L 353 -64.640 35.939 -0.047 1.00 24.29 ATOM 164 O ARG L 353 -65.683 35.359 -0.211 1.00 27.03 ATOM 165 CB ARG L 353 -64.607 38.223 1.015 1.00 30.71 ATOM 166 CG ARG L 353 -65.995 38.549 0.416 1.00 51.09 ATOM 167 CD ARG L 353 -67.072 39.082 1.397 1.00 70.85 ATOM 168 NE ARG L 353 -68.410 38.996 0.744 1.00 88.30 ATOM 169 CZ ARG L 353 -69.469 38.274 1.156 1.00 92.47 ATOM 170 NH1 ARG L 353 -69.467 37.581 2.300 1.00105.22 ATOM 171 NH2 ARG L 353 -70.564 38.251 0.410 1.00 92.92 ATOM 172 N GLU L 354 -63.647 35.880 -0.931 1.00 24.69 ATOM 173 CA GLU L 354 -63.823 35.055 -2.136 1.00 24.07 ATOM 174 C GLU L 354 -64.093 33.654 -1.839 1.00 22.22 ATOM 175 O GLU L 354 -64.876 32.936 -2.537 1.00 23.70 ATOM 176 CB GLU L 354 -62.585 35.276 -3.039 1.00 24.37 ATOM 177 CG GLU L 354 -62.547 34.370 -4.299 1.00 29.76 ATOM 178 CD GLU L 354 -61.255 34.510 -5.139 1.00 30.79 ATOM 179 OE1 GLU L 354 -60.249 35.137 -4.656 1.00 28.27 ATOM 180 OE2 GLU L 354 -61.303 33.923 -6.259 1.00 29.42 ATOM 181 N LEU L 355 -63.379 33.130 -0.811 1.00 21.97 ATOM 182 CA LEU L 355 -63.557 31.764 -0.429 1.00 20.70 ATOM 183 C LEU L 355 -65.017 31.594 0.091 1.00 23.07 ATOM 184 O LEU L 355 -65.715 30.652 -0.209 1.00 22.98 ATOM 185 CB LEU L 355 -62.553 31.324 0.666 1.00 21.24 ATOM 186 CG LEU L 355 -61.105 31.521 0.196 1.00 22.02 ATOM 187 CD1 LEU L 355 -60.249 31.064 1.359 1.00 22.62 ATOM 188 CD2 LEU L 355 -60.731 30.771 -1.060 1.00 23.16 ATOM 189 N LEU L 356 -65.353 32.435 1.067 1.00 24.00 ATOM 190 CA LEU L 356 -66.749 32.347 1.665 1.00 26.07 ATOM 191 C LEU L 356 -67.870 32.434 0.578 1.00 26.84 ATOM 192 O LEU L 356 -68.812 31.644 0.604 1.00 29.64 ATOM 193 CB LEU L 356 -66.884 33.559 2.665 1.00 31.38 ATOM 194 CG LEU L 356 -68.305 33.771 3.275 1.00 45.75 ATOM 195 CD1 LEU L 356 -68.642 32.499 4.054 1.00 53.88 ATOM 196 CD2 LEU L 356 -68.409 35.097 4.125 1.00 48.71 ATOM 197 N GLU L 357 -67.684 33.334 -0.335 1.00 27.93 ATOM 198 CA GLU L 357 -68.661 33.504 -1.466 1.00 29.37 ATOM 199 C GLU L 357 -68.745 32.295 -2.361 1.00 31.52 ATOM 200 O GLU L 357 -69.811 31.940 -2.892 1.00 28.55 ATOM 201 CB GLU L 357 -68.352 34.665 -2.272 1.00 32.25 ATOM 202 CG GLU L 357 -68.567 35.976 -1.557 1.00 40.50 ATOM 203 CD GLU L 357 -68.067 37.139 -2.378 1.00 49.74 ATOM 204 OE1 GLU L 357 -67.243 36.938 -3.297 1.00 60.79 ATOM 205 OE2 GLU L 357 -68.425 38.296 -2.054 1.00 60.65 ATOM 206 N SER L 358 -67.653 31.499 -2.459 1.00 27.40 ATOM 207 CA SER L 358 -67.747 30.322 -3.242 1.00 24.89 ATOM 208 C SER L 358 -68.641 29.298 -2.655 1.00 25.94 ATOM 209 O SER L 358 -69.087 28.391 -3.352 1.00 27.08 ATOM 210 CB SER L 358 -66.304 29.719 -3.484 1.00 24.56 ATOM 211 OG SER L 358 -65.890 29.006 -2.341 1.00 24.36 ATOM 212 N TYR L 359 -68.903 29.290 -1.353 1.00 25.62 ATOM 213 CA TYR L 359 -69.828 28.340 -0.754 1.00 28.37 ATOM 214 C TYR L 359 -71.328 28.654 -1.079 1.00 29.04 ATOM 215 O TYR L 359 -72.164 27.745 -0.947 1.00 32.23 ATOM 216 CB TYR L 359 -69.722 28.362 0.734 1.00 29.44 ATOM 217 CG TYR L 359 -68.360 28.014 1.267 1.00 27.99 ATOM 218 CD1 TYR L 359 -67.752 26.863 0.861 1.00 29.43 ATOM 219 CD2 TYR L 359 -67.747 28.809 2.258 1.00 30.06 ATOM 220 CE1 TYR L 359 -66.478 26.516 1.348 1.00 30.53 ATOM 221 CE2 TYR L 359 -66.517 28.474 2.761 1.00 29.58 ATOM 222 CZ TYR L 359 -65.899 27.340 2.343 1.00 28.21 ATOM 223 OH TYR L 359 -64.660 26.900 2.866 1.00 26.08 ATOM 224 N ILE L 360 -71.536 29.835 -1.549 1.00 34.23 ATOM 225 CA ILE L 360 -72.894 30.314 -2.017 1.00 45.22 ATOM 226 C ILE L 360 -73.031 30.057 -3.524 1.00 51.92 ATOM 227 O ILE L 360 -73.740 29.151 -3.913 1.00 58.87 ATOM 228 CB ILE L 360 -73.035 31.806 -1.765 1.00 45.88 ATOM 229 CG1 ILE L 360 -72.843 32.072 -0.285 1.00 50.91 ATOM 230 CG2 ILE L 360 -74.424 32.259 -2.245 1.00 51.54 ATOM 231 CD1 ILE L 360 -72.484 33.508 0.046 1.00 57.10 ATOM 232 N ASP L 361 -72.224 30.766 -4.321 1.00 62.99 ATOM 233 CA ASP L 361 -72.346 30.862 -5.787 1.00 80.25 ATOM 234 C ASP L 361 -71.792 29.648 -6.516 1.00 85.49 ATOM 235 O ASP L 361 -70.742 29.140 -6.123 1.00 86.11 ATOM 236 CB ASP L 361 -71.616 32.139 -6.270 1.00 83.48 ATOM 237 CG ASP L 361 -72.316 33.422 -5.809 1.00 89.89 ATOM 238 OD1 ASP L 361 -73.569 33.456 -5.779 1.00 85.17 ATOM 239 OD2 ASP L 361 -71.615 34.403 -5.484 1.00 95.01 TER