HEADER HYDROLASE/DNA 31-DEC-69 6EO7 TITLE X-ray structure of the complex between human alpha-thrombin and TITLE 2 modified 15-mer DNA aptamer containing TITLE 3 5-(3-(acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine residue COMPND MOL_ID: 2; COMPND 2 MOLECULE: Prothrombin; COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.24 ANGSTORMS DBREF 6EO7 L 328 363 UNP P00734 THRB_HUMAN 328 363 SEQRES 1 L 30 GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS SEQRES 2 L 30 LYS SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SEQRES 3 L 30 SER TYR ILE ASP ATOM 1 N GLY L 332 44.986 -17.551 45.365 1.00 66.38 ATOM 2 CA GLY L 332 45.028 -18.884 44.660 1.00 75.93 ATOM 3 C GLY L 332 44.113 -19.948 45.318 1.00 88.06 ATOM 4 O GLY L 332 44.314 -20.347 46.554 1.00 70.62 ATOM 5 N GLU L 333 43.133 -20.374 44.492 1.00 75.43 ATOM 6 CA GLU L 333 42.036 -21.345 44.802 1.00100.28 ATOM 7 C GLU L 333 41.266 -21.773 43.474 1.00123.75 ATOM 8 O GLU L 333 41.504 -22.891 42.974 1.00149.19 ATOM 9 CB GLU L 333 41.038 -20.833 45.891 1.00 98.97 ATOM 10 CG GLU L 333 40.560 -21.945 46.849 1.00110.72 ATOM 11 CD GLU L 333 39.071 -21.904 47.238 1.00118.43 ATOM 12 OE1 GLU L 333 38.771 -21.651 48.435 1.00123.49 ATOM 13 OE2 GLU L 333 38.196 -22.175 46.370 1.00105.81 ATOM 14 N ALA L 334 40.368 -20.923 42.910 1.00100.10 ATOM 15 CA ALA L 334 39.829 -21.103 41.527 1.00 72.86 ATOM 16 C ALA L 334 40.486 -19.970 40.745 1.00 58.32 ATOM 17 O ALA L 334 39.917 -18.910 40.511 1.00 38.21 ATOM 18 CB ALA L 334 38.318 -21.027 41.465 1.00 64.51 ATOM 19 N ASP L 335 41.771 -20.172 40.451 1.00 43.89 ATOM 20 CA ASP L 335 42.491 -19.228 39.627 1.00 37.42 ATOM 21 C ASP L 335 42.643 -19.854 38.195 1.00 32.93 ATOM 22 O ASP L 335 43.586 -19.499 37.492 1.00 31.38 ATOM 23 CB ASP L 335 43.817 -18.783 40.302 1.00 35.32 ATOM 24 CG ASP L 335 44.755 -19.949 40.510 1.00 38.14 ATOM 25 OD1 ASP L 335 44.229 -21.103 40.543 1.00 39.93 ATOM 26 OD2 ASP L 335 45.988 -19.739 40.584 1.00 34.07 ATOM 27 N CYS L 336 41.664 -20.675 37.755 1.00 29.14 ATOM 28 CA CYS L 336 41.576 -21.157 36.357 1.00 32.51 ATOM 29 C CYS L 336 41.819 -20.020 35.379 1.00 29.26 ATOM 30 O CYS L 336 41.350 -18.897 35.546 1.00 29.06 ATOM 31 CB CYS L 336 40.265 -21.915 35.966 1.00 33.62 ATOM 32 SG CYS L 336 38.881 -20.766 35.714 1.00 50.66 ATOM 33 N GLY L 337 42.618 -20.309 34.376 1.00 26.18 ATOM 34 CA GLY L 337 42.724 -19.404 33.255 1.00 28.69 ATOM 35 C GLY L 337 43.543 -18.201 33.534 1.00 27.79 ATOM 36 O GLY L 337 43.498 -17.238 32.748 1.00 27.69 ATOM 37 N LEU L 338 44.317 -18.227 34.616 1.00 30.71 ATOM 38 CA LEU L 338 45.278 -17.124 34.871 1.00 29.13 ATOM 39 C LEU L 338 46.663 -17.717 34.918 1.00 29.21 ATOM 40 O LEU L 338 46.974 -18.500 35.799 1.00 30.69 ATOM 41 CB LEU L 338 44.947 -16.464 36.203 1.00 30.82 ATOM 42 CG LEU L 338 43.606 -15.753 36.324 1.00 35.63 ATOM 43 CD1 LEU L 338 43.203 -15.480 37.786 1.00 37.02 ATOM 44 CD2 LEU L 338 43.614 -14.423 35.586 1.00 35.77 ATOM 45 N ARG L 339 47.532 -17.320 34.006 1.00 29.94 ATOM 46 CA ARG L 339 48.794 -17.997 33.876 1.00 29.27 ATOM 47 C ARG L 339 49.793 -17.503 34.920 1.00 29.83 ATOM 48 O ARG L 339 49.978 -16.327 35.035 1.00 27.44 ATOM 49 CB ARG L 339 49.367 -17.783 32.477 1.00 29.12 ATOM 50 CG ARG L 339 48.384 -18.268 31.378 1.00 31.34 ATOM 51 CD ARG L 339 48.788 -17.900 29.995 1.00 28.70 ATOM 52 NE ARG L 339 48.634 -16.508 29.782 1.00 28.86 ATOM 53 CZ ARG L 339 49.016 -15.845 28.703 1.00 29.60 ATOM 54 NH1 ARG L 339 49.564 -16.483 27.696 1.00 29.43 ATOM 55 NH2 ARG L 339 48.859 -14.520 28.647 1.00 30.03 ATOM 56 N PRO L 340 50.497 -18.412 35.594 1.00 28.01 ATOM 57 CA PRO L 340 51.518 -18.023 36.512 1.00 30.16 ATOM 58 C PRO L 340 52.575 -17.128 35.904 1.00 37.81 ATOM 59 O PRO L 340 52.980 -16.223 36.590 1.00 36.80 ATOM 60 CB PRO L 340 52.167 -19.347 36.887 1.00 29.50 ATOM 61 CG PRO L 340 51.036 -20.308 36.854 1.00 30.45 ATOM 62 CD PRO L 340 50.208 -19.853 35.683 1.00 29.08 ATOM 63 N LEU L 341 53.039 -17.359 34.663 1.00 34.11 ATOM 64 CA LEU L 341 54.074 -16.514 34.086 1.00 30.11 ATOM 65 C LEU L 341 53.589 -15.269 33.348 1.00 31.80 ATOM 66 O LEU L 341 54.397 -14.472 32.826 1.00 31.49 ATOM 67 CB LEU L 341 54.951 -17.306 33.167 1.00 31.43 ATOM 68 CG LEU L 341 55.718 -18.370 33.891 1.00 36.90 ATOM 69 CD1 LEU L 341 56.624 -19.151 32.919 1.00 35.38 ATOM 70 CD2 LEU L 341 56.616 -17.741 34.964 1.00 37.76 ATOM 71 N PHE L 342 52.282 -15.046 33.327 1.00 31.61 ATOM 72 CA PHE L 342 51.745 -13.909 32.605 1.00 32.92 ATOM 73 C PHE L 342 50.787 -13.088 33.470 1.00 33.57 ATOM 74 O PHE L 342 51.218 -12.197 34.150 1.00 34.07 ATOM 75 CB PHE L 342 51.173 -14.376 31.227 1.00 34.18 ATOM 76 CG PHE L 342 52.267 -14.762 30.281 1.00 29.58 ATOM 77 CD1 PHE L 342 52.947 -13.779 29.581 1.00 29.95 ATOM 78 CD2 PHE L 342 52.718 -16.092 30.213 1.00 31.78 ATOM 79 CE1 PHE L 342 54.037 -14.094 28.787 1.00 32.40 ATOM 80 CE2 PHE L 342 53.780 -16.446 29.379 1.00 33.73 ATOM 81 CZ PHE L 342 54.456 -15.430 28.690 1.00 38.66 ATOM 82 N GLU L 343 49.521 -13.387 33.468 1.00 32.24 ATOM 83 CA GLU L 343 48.565 -12.568 34.210 1.00 32.36 ATOM 84 C GLU L 343 49.047 -12.428 35.680 1.00 34.41 ATOM 85 O GLU L 343 48.975 -11.311 36.205 1.00 30.94 ATOM 86 CB GLU L 343 47.170 -13.186 34.216 1.00 30.55 ATOM 87 CG GLU L 343 46.401 -13.200 32.897 1.00 33.73 ATOM 88 CD GLU L 343 47.013 -14.077 31.806 1.00 34.45 ATOM 89 OE1 GLU L 343 46.896 -13.684 30.616 1.00 34.25 ATOM 90 OE2 GLU L 343 47.622 -15.119 32.143 1.00 27.05 ATOM 91 N LYS L 344 49.599 -13.491 36.302 1.00 31.79 ATOM 92 CA LYS L 344 49.921 -13.426 37.731 1.00 33.05 ATOM 93 C LYS L 344 51.129 -12.584 38.011 1.00 37.20 ATOM 94 O LYS L 344 51.340 -12.189 39.180 1.00 40.17 ATOM 95 CB LYS L 344 50.077 -14.776 38.400 1.00 32.68 ATOM 96 CG LYS L 344 48.865 -15.664 38.484 1.00 38.60 ATOM 97 CD LYS L 344 47.624 -15.050 39.109 1.00 50.10 ATOM 98 CE LYS L 344 47.522 -15.293 40.595 1.00 63.48 ATOM 99 NZ LYS L 344 46.883 -16.640 40.868 1.00 79.75 ATOM 100 N LYS L 345 51.890 -12.272 36.957 1.00 38.74 ATOM 101 CA LYS L 345 53.017 -11.357 37.016 1.00 34.72 ATOM 102 C LYS L 345 52.740 -10.020 36.313 1.00 38.47 ATOM 103 O LYS L 345 53.672 -9.225 36.085 1.00 37.20 ATOM 104 CB LYS L 345 54.213 -11.986 36.350 1.00 39.27 ATOM 105 CG LYS L 345 54.706 -13.243 36.976 1.00 43.89 ATOM 106 CD LYS L 345 56.160 -13.459 36.627 1.00 51.55 ATOM 107 CE LYS L 345 56.762 -14.535 37.512 1.00 63.34 ATOM 108 NZ LYS L 345 58.191 -14.692 37.122 1.00 74.66 ATOM 109 N SER L 346 51.493 -9.769 35.924 1.00 35.66 ATOM 110 CA SER L 346 51.194 -8.570 35.100 1.00 45.74 ATOM 111 C SER L 346 52.098 -8.423 33.860 1.00 47.64 ATOM 112 O SER L 346 52.401 -7.311 33.451 1.00 53.85 ATOM 113 CB SER L 346 51.281 -7.288 35.960 1.00 48.03 ATOM 114 OG SER L 346 50.654 -7.483 37.216 1.00 48.01 ATOM 115 N LEU L 347 52.536 -9.547 33.291 1.00 42.77 ATOM 116 CA LEU L 347 53.185 -9.551 32.010 1.00 44.41 ATOM 117 C LEU L 347 52.167 -10.004 30.972 1.00 44.29 ATOM 118 O LEU L 347 51.283 -10.825 31.282 1.00 44.12 ATOM 119 CB LEU L 347 54.393 -10.480 32.045 1.00 43.82 ATOM 120 CG LEU L 347 55.493 -10.047 33.022 1.00 48.45 ATOM 121 CD1 LEU L 347 56.621 -11.093 33.094 1.00 45.90 ATOM 122 CD2 LEU L 347 56.023 -8.646 32.644 1.00 43.86 ATOM 123 N GLU L 348 52.278 -9.432 29.769 1.00 47.41 ATOM 124 CA GLU L 348 51.471 -9.799 28.585 1.00 48.06 ATOM 125 C GLU L 348 52.306 -10.649 27.662 1.00 44.05 ATOM 126 O GLU L 348 53.539 -10.436 27.546 1.00 38.49 ATOM 127 CB GLU L 348 51.018 -8.569 27.796 1.00 52.17 ATOM 128 CG GLU L 348 49.988 -7.745 28.568 1.00 67.31 ATOM 129 CD GLU L 348 49.460 -6.511 27.815 1.00 78.23 ATOM 130 OE1 GLU L 348 49.808 -6.312 26.584 1.00 65.57 ATOM 131 OE2 GLU L 348 48.676 -5.767 28.509 1.00 77.18 ATOM 132 N ASP L 349 51.656 -11.615 27.001 1.00 34.26 ATOM 133 CA ASP L 349 52.406 -12.366 26.036 1.00 32.53 ATOM 134 C ASP L 349 52.468 -11.485 24.762 1.00 32.58 ATOM 135 O ASP L 349 51.714 -10.487 24.613 1.00 33.63 ATOM 136 CB ASP L 349 51.872 -13.794 25.849 1.00 31.75 ATOM 137 CG ASP L 349 50.524 -13.841 25.178 1.00 30.75 ATOM 138 OD1 ASP L 349 50.381 -13.215 24.096 1.00 34.25 ATOM 139 OD2 ASP L 349 49.603 -14.475 25.725 1.00 30.95 ATOM 140 N LYS L 350 53.364 -11.871 23.872 1.00 33.62 ATOM 141 CA LYS L 350 53.599 -11.175 22.611 1.00 40.39 ATOM 142 C LYS L 350 52.397 -10.955 21.667 1.00 40.63 ATOM 143 O LYS L 350 52.464 -10.049 20.898 1.00 40.86 ATOM 144 CB LYS L 350 54.707 -11.876 21.860 1.00 49.91 ATOM 145 CG LYS L 350 56.076 -11.613 22.455 1.00 61.98 ATOM 146 CD LYS L 350 57.183 -12.358 21.706 1.00 85.51 ATOM 147 CE LYS L 350 58.578 -12.028 22.286 1.00 96.05 ATOM 148 NZ LYS L 350 59.492 -13.215 22.311 1.00 96.85 ATOM 149 N THR L 351 51.318 -11.751 21.709 1.00 38.81 ATOM 150 CA THR L 351 50.224 -11.566 20.750 1.00 38.42 ATOM 151 C THR L 351 48.875 -11.400 21.373 1.00 37.56 ATOM 152 O THR L 351 47.885 -11.198 20.684 1.00 35.89 ATOM 153 CB THR L 351 50.194 -12.699 19.688 1.00 42.68 ATOM 154 OG1 THR L 351 49.984 -13.976 20.300 1.00 43.22 ATOM 155 CG2 THR L 351 51.542 -12.754 18.903 1.00 37.61 ATOM 156 N GLU L 352 48.804 -11.441 22.687 1.00 36.17 ATOM 157 CA GLU L 352 47.489 -11.321 23.291 1.00 40.62 ATOM 158 C GLU L 352 46.796 -9.970 22.979 1.00 39.34 ATOM 159 O GLU L 352 45.565 -9.902 22.900 1.00 35.76 ATOM 160 CB GLU L 352 47.533 -11.656 24.797 1.00 39.00 ATOM 161 CG GLU L 352 48.290 -10.680 25.676 1.00 42.25 ATOM 162 CD GLU L 352 48.079 -10.962 27.153 1.00 38.15 ATOM 163 OE1 GLU L 352 47.084 -10.467 27.652 1.00 43.36 ATOM 164 OE2 GLU L 352 48.911 -11.665 27.774 1.00 35.25 ATOM 165 N ARG L 353 47.595 -8.912 22.816 1.00 45.75 ATOM 166 CA ARG L 353 47.124 -7.608 22.287 1.00 51.53 ATOM 167 C ARG L 353 46.171 -7.768 21.049 1.00 47.00 ATOM 168 O ARG L 353 45.067 -7.190 20.966 1.00 35.36 ATOM 169 CB ARG L 353 48.365 -6.790 21.898 1.00 63.82 ATOM 170 CG ARG L 353 48.246 -5.283 22.025 1.00 83.14 ATOM 171 CD ARG L 353 48.217 -4.821 23.489 1.00100.96 ATOM 172 NE ARG L 353 46.840 -4.728 23.987 1.00112.65 ATOM 173 CZ ARG L 353 46.457 -4.179 25.139 1.00111.80 ATOM 174 NH1 ARG L 353 47.350 -3.640 25.978 1.00109.92 ATOM 175 NH2 ARG L 353 45.152 -4.169 25.445 1.00100.17 ATOM 176 N GLU L 354 46.602 -8.615 20.113 1.00 45.53 ATOM 177 CA GLU L 354 45.841 -8.887 18.891 1.00 45.96 ATOM 178 C GLU L 354 44.398 -9.383 19.206 1.00 41.17 ATOM 179 O GLU L 354 43.402 -8.981 18.558 1.00 35.82 ATOM 180 CB GLU L 354 46.692 -9.821 17.978 1.00 52.93 ATOM 181 CG GLU L 354 45.960 -10.395 16.765 1.00 61.24 ATOM 182 CD GLU L 354 46.788 -11.335 15.864 1.00 60.90 ATOM 183 OE1 GLU L 354 47.910 -11.765 16.260 1.00 53.87 ATOM 184 OE2 GLU L 354 46.240 -11.663 14.766 1.00 54.37 ATOM 185 N LEU L 355 44.247 -10.178 20.258 1.00 37.47 ATOM 186 CA LEU L 355 42.936 -10.771 20.534 1.00 37.62 ATOM 187 C LEU L 355 41.986 -9.735 21.099 1.00 43.03 ATOM 188 O LEU L 355 40.755 -9.696 20.763 1.00 38.06 ATOM 189 CB LEU L 355 43.067 -11.962 21.515 1.00 38.52 ATOM 190 CG LEU L 355 44.000 -13.109 21.126 1.00 38.05 ATOM 191 CD1 LEU L 355 44.114 -14.105 22.228 1.00 39.39 ATOM 192 CD2 LEU L 355 43.438 -13.806 19.914 1.00 39.34 ATOM 193 N LEU L 356 42.547 -8.929 22.002 1.00 45.94 ATOM 194 CA LEU L 356 41.798 -7.839 22.649 1.00 51.69 ATOM 195 C LEU L 356 41.353 -6.786 21.596 1.00 43.85 ATOM 196 O LEU L 356 40.206 -6.395 21.534 1.00 34.74 ATOM 197 CB LEU L 356 42.677 -7.158 23.701 1.00 62.18 ATOM 198 CG LEU L 356 42.082 -7.270 25.108 1.00 82.52 ATOM 199 CD1 LEU L 356 42.660 -8.521 25.850 1.00 78.45 ATOM 200 CD2 LEU L 356 42.282 -5.932 25.835 1.00 86.69 ATOM 201 N GLU L 357 42.264 -6.394 20.720 1.00 42.58 ATOM 202 CA GLU L 357 41.874 -5.531 19.573 1.00 45.31 ATOM 203 C GLU L 357 40.724 -6.115 18.746 1.00 44.89 ATOM 204 O GLU L 357 39.849 -5.388 18.335 1.00 47.91 ATOM 205 CB GLU L 357 43.073 -5.182 18.709 1.00 46.61 ATOM 206 CG GLU L 357 44.013 -4.195 19.420 1.00 52.49 ATOM 207 CD GLU L 357 45.461 -4.212 18.918 1.00 60.65 ATOM 208 OE1 GLU L 357 45.777 -4.845 17.886 1.00 69.79 ATOM 209 OE2 GLU L 357 46.320 -3.597 19.586 1.00 72.53 ATOM 210 N SER L 358 40.614 -7.434 18.639 1.00 44.39 ATOM 211 CA SER L 358 39.518 -7.985 17.838 1.00 41.51 ATOM 212 C SER L 358 38.160 -7.772 18.453 1.00 41.01 ATOM 213 O SER L 358 37.181 -7.974 17.790 1.00 45.05 ATOM 214 CB SER L 358 39.771 -9.471 17.472 1.00 39.43 ATOM 215 OG SER L 358 39.468 -10.402 18.518 1.00 39.02 ATOM 216 N TYR L 359 38.072 -7.433 19.732 1.00 48.13 ATOM 217 CA TYR L 359 36.749 -7.196 20.357 1.00 54.78 ATOM 218 C TYR L 359 36.169 -5.795 20.024 1.00 56.83 ATOM 219 O TYR L 359 34.962 -5.565 20.089 1.00 55.06 ATOM 220 CB TYR L 359 36.870 -7.312 21.866 1.00 56.23 ATOM 221 CG TYR L 359 37.306 -8.677 22.349 1.00 55.68 ATOM 222 CD1 TYR L 359 36.623 -9.811 21.973 1.00 57.09 ATOM 223 CD2 TYR L 359 38.379 -8.826 23.205 1.00 53.33 ATOM 224 CE1 TYR L 359 37.004 -11.058 22.431 1.00 61.81 ATOM 225 CE2 TYR L 359 38.767 -10.076 23.674 1.00 52.39 ATOM 226 CZ TYR L 359 38.067 -11.184 23.287 1.00 52.46 ATOM 227 OH TYR L 359 38.420 -12.427 23.722 1.00 56.18 ATOM 228 N ILE L 360 37.077 -4.889 19.680 1.00 66.33 ATOM 229 CA ILE L 360 36.784 -3.512 19.306 1.00 82.46 ATOM 230 C ILE L 360 36.411 -3.473 17.807 1.00 91.43 ATOM 231 O ILE L 360 35.219 -3.383 17.438 1.00 86.17 ATOM 232 CB ILE L 360 38.031 -2.644 19.653 1.00 81.89 ATOM 233 CG1 ILE L 360 38.170 -2.536 21.187 1.00 84.40 ATOM 234 CG2 ILE L 360 37.962 -1.278 18.980 1.00 92.54 ATOM 235 CD1 ILE L 360 39.608 -2.476 21.685 1.00 89.58 ATOM 236 N ASP L 361 37.440 -3.623 16.966 1.00110.30 ATOM 237 CA ASP L 361 37.315 -3.562 15.507 1.00128.04 ATOM 238 C ASP L 361 36.568 -4.766 14.963 1.00131.21 ATOM 239 O ASP L 361 36.222 -4.798 13.787 1.00129.02 ATOM 240 CB ASP L 361 38.704 -3.467 14.840 1.00128.91 ATOM 241 CG ASP L 361 39.330 -2.091 14.993 1.00134.83 ATOM 242 OD1 ASP L 361 38.648 -1.078 14.712 1.00136.44 ATOM 243 OD2 ASP L 361 40.507 -2.018 15.387 1.00124.90 TER