HEADER BLOOD CLOTTING 31-DEC-69 6EO9 TITLE Crystal structure of thrombin in complex with a novel TITLE 2 glucose-conjugated potent inhibitor COMPND MOL_ID: 1; COMPND 2 MOLECULE: Prothrombin; COMPND 3 CHAIN: H; COMPND 4 EC: 3.4.21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 Prothrombin; COMPND 8 CHAIN: L; COMPND 9 EC: 3.4.21.5; COMPND 10 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.84 ANGSTORMS DBREF 6EO9 H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 6EO9 L -5 18 UNP P00734 THRB_HUMAN 328 363 SEQRES 1 L 26 ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SER SEQRES 2 L 26 LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER TYR ATOM 1 N ALA L 1B 13.609 20.033 15.445 1.00 46.27 ATOM 2 CA ALA L 1B 14.264 21.416 15.396 1.00 43.40 ATOM 3 C ALA L 1B 15.782 21.254 15.272 1.00 32.85 ATOM 4 O ALA L 1B 16.357 21.499 14.222 1.00 30.77 ATOM 5 CB ALA L 1B 13.897 22.260 16.624 1.00 44.09 ATOM 6 N ASP L 1A 16.420 20.774 16.334 1.00 28.19 ATOM 7 CA ASP L 1A 17.768 20.289 16.215 1.00 28.03 ATOM 8 C ASP L 1A 17.758 18.741 16.170 1.00 25.81 ATOM 9 O ASP L 1A 18.760 18.141 16.545 1.00 23.10 ATOM 10 CB ASP L 1A 18.660 20.814 17.360 1.00 29.94 ATOM 11 CG ASP L 1A 18.153 20.413 18.713 1.00 36.89 ATOM 12 OD1 ASP L 1A 17.013 19.885 18.840 1.00 39.61 ATOM 13 OD2 ASP L 1A 18.911 20.635 19.675 1.00 41.19 ATOM 14 N CYS L 1 16.636 18.130 15.725 1.00 22.23 ATOM 15 CA CYS L 1 16.542 16.668 15.544 1.00 19.64 ATOM 16 C CYS L 1 17.702 16.190 14.736 1.00 17.66 ATOM 17 O CYS L 1 18.174 16.886 13.792 1.00 18.12 ATOM 18 CB CYS L 1 15.184 16.245 14.915 1.00 20.75 ATOM 19 SG CYS L 1 14.946 16.624 13.189 1.00 21.30 ATOM 20 N GLY L 2 18.178 14.994 15.107 1.00 15.92 ATOM 21 CA GLY L 2 19.168 14.293 14.349 1.00 14.95 ATOM 22 C GLY L 2 20.564 14.840 14.315 1.00 16.58 ATOM 23 O GLY L 2 21.425 14.349 13.561 1.00 17.38 ATOM 24 N LEU L 3 20.834 15.803 15.193 1.00 16.09 ATOM 25 CA LEU L 3 22.176 16.366 15.290 1.00 16.34 ATOM 26 C LEU L 3 22.671 15.968 16.647 1.00 15.21 ATOM 27 O LEU L 3 22.125 16.430 17.656 1.00 15.69 ATOM 28 CB LEU L 3 22.074 17.886 15.128 1.00 17.90 ATOM 29 CG LEU L 3 21.726 18.416 13.708 1.00 19.08 ATOM 30 CD1 LEU L 3 21.637 19.928 13.773 1.00 24.23 ATOM 31 CD2 LEU L 3 22.732 18.040 12.621 1.00 20.96 ATOM 32 N ARG L 4 23.667 15.119 16.688 1.00 15.72 ATOM 33 CA ARG L 4 24.089 14.517 17.964 1.00 15.78 ATOM 34 C ARG L 4 24.992 15.471 18.723 1.00 17.56 ATOM 35 O ARG L 4 25.995 15.936 18.159 1.00 20.03 ATOM 36 CB ARG L 4 24.774 13.191 17.802 1.00 15.18 ATOM 37 CG ARG L 4 23.955 12.177 16.954 1.00 16.16 ATOM 38 CD ARG L 4 24.783 10.999 16.534 1.00 15.59 ATOM 39 NE ARG L 4 25.654 11.366 15.480 1.00 16.18 ATOM 40 CZ ARG L 4 26.571 10.552 14.951 1.00 15.73 ATOM 41 NH1 ARG L 4 26.708 9.321 15.405 1.00 14.72 ATOM 42 NH2 ARG L 4 27.334 10.973 13.958 1.00 16.20 ATOM 43 N PRO L 5 24.707 15.647 20.008 1.00 17.81 ATOM 44 CA PRO L 5 25.554 16.457 20.909 1.00 18.48 ATOM 45 C PRO L 5 27.029 16.142 20.853 1.00 18.91 ATOM 46 O PRO L 5 27.872 17.096 20.822 1.00 22.91 ATOM 47 CB PRO L 5 24.958 16.181 22.272 1.00 17.46 ATOM 48 CG PRO L 5 23.512 15.973 22.018 1.00 18.97 ATOM 49 CD PRO L 5 23.488 15.193 20.714 1.00 16.88 ATOM 50 N LEU L 6 27.388 14.873 20.812 1.00 17.73 ATOM 51 CA LEU L 6 28.761 14.472 20.820 1.00 19.23 ATOM 52 C LEU L 6 29.446 14.323 19.480 1.00 19.73 ATOM 53 O LEU L 6 30.646 14.002 19.455 1.00 20.08 ATOM 54 CB LEU L 6 28.977 13.230 21.678 1.00 19.95 ATOM 55 CG LEU L 6 28.637 13.349 23.177 1.00 22.17 ATOM 56 CD1 LEU L 6 28.947 12.004 23.838 1.00 19.90 ATOM 57 CD2 LEU L 6 29.355 14.533 23.863 1.00 24.10 ATOM 58 N PHE L 7 28.719 14.522 18.371 1.00 19.90 ATOM 59 CA PHE L 7 29.273 14.359 17.055 1.00 19.01 ATOM 60 C PHE L 7 28.927 15.620 16.205 1.00 19.86 ATOM 61 O PHE L 7 29.713 16.632 16.244 1.00 20.42 ATOM 62 CB PHE L 7 28.784 13.039 16.463 1.00 17.95 ATOM 63 CG PHE L 7 29.395 11.858 17.118 1.00 17.54 ATOM 64 CD1 PHE L 7 30.672 11.455 16.781 1.00 17.06 ATOM 65 CD2 PHE L 7 28.750 11.231 18.179 1.00 17.62 ATOM 66 CE1 PHE L 7 31.262 10.399 17.431 1.00 18.17 ATOM 67 CE2 PHE L 7 29.325 10.159 18.805 1.00 17.09 ATOM 68 CZ PHE L 7 30.573 9.740 18.434 1.00 18.92 ATOM 69 N GLU L 8 27.748 15.664 15.563 1.00 17.77 ATOM 70 CA GLU L 8 27.403 16.796 14.664 1.00 19.11 ATOM 71 C GLU L 8 27.485 18.145 15.373 1.00 22.86 ATOM 72 O GLU L 8 27.948 19.089 14.789 1.00 22.18 ATOM 73 CB GLU L 8 26.010 16.688 14.030 1.00 20.23 ATOM 74 CG GLU L 8 26.002 15.633 12.920 1.00 18.18 ATOM 75 CD GLU L 8 25.921 14.209 13.467 1.00 17.67 ATOM 76 OE1 GLU L 8 25.618 14.046 14.679 1.00 15.69 ATOM 77 OE2 GLU L 8 26.234 13.268 12.718 1.00 17.23 ATOM 78 N LYS L 9 27.021 18.241 16.619 1.00 24.38 ATOM 79 CA LYS L 9 27.075 19.505 17.350 1.00 24.90 ATOM 80 C LYS L 9 28.472 19.950 17.721 1.00 24.26 ATOM 81 O LYS L 9 28.656 21.100 18.208 1.00 26.92 ATOM 82 CB LYS L 9 26.209 19.428 18.624 1.00 24.21 ATOM 83 CG LYS L 9 24.768 19.161 18.323 1.00 27.04 ATOM 84 CD LYS L 9 23.817 19.579 19.405 1.00 30.89 ATOM 85 CE LYS L 9 22.407 19.627 18.877 1.00 34.10 ATOM 86 NZ LYS L 9 21.641 20.554 19.719 1.00 37.07 ATOM 87 N LYS L 10 29.453 19.068 17.590 1.00 23.46 ATOM 88 CA LYS L 10 30.863 19.392 17.836 1.00 26.61 ATOM 89 C LYS L 10 31.685 19.258 16.592 1.00 27.57 ATOM 90 O LYS L 10 32.933 19.253 16.639 1.00 28.92 ATOM 91 CB LYS L 10 31.424 18.458 18.915 1.00 29.59 ATOM 92 CG LYS L 10 30.899 18.826 20.283 1.00 32.75 ATOM 93 CD LYS L 10 31.008 17.707 21.293 1.00 40.24 ATOM 94 CE LYS L 10 32.399 17.158 21.449 1.00 46.81 ATOM 95 NZ LYS L 10 33.189 18.003 22.361 1.00 54.71 ATOM 96 N SER L 11 31.004 19.127 15.460 1.00 27.09 ATOM 97 CA SER L 11 31.675 18.739 14.211 1.00 28.83 ATOM 98 C SER L 11 32.658 17.603 14.329 1.00 30.02 ATOM 99 O SER L 11 33.716 17.656 13.725 1.00 33.25 ATOM 100 CB SER L 11 32.333 19.969 13.542 1.00 29.29 ATOM 101 OG SER L 11 32.469 19.697 12.175 1.00 33.47 ATOM 102 N LEU L 12 32.288 16.517 15.035 1.00 26.86 ATOM 103 CA LEU L 12 33.127 15.334 15.110 1.00 27.63 ATOM 104 C LEU L 12 32.398 14.217 14.361 1.00 29.13 ATOM 105 O LEU L 12 31.162 14.165 14.416 1.00 23.97 ATOM 106 CB LEU L 12 33.321 14.929 16.580 1.00 30.80 ATOM 107 CG LEU L 12 34.232 15.834 17.439 1.00 33.53 ATOM 108 CD1 LEU L 12 34.320 15.309 18.861 1.00 32.09 ATOM 109 CD2 LEU L 12 35.622 15.940 16.784 1.00 33.79 ATOM 110 N GLU L 13 33.164 13.382 13.659 1.00 26.90 ATOM 111 CA GLU L 13 32.609 12.254 12.946 1.00 28.07 ATOM 112 C GLU L 13 32.718 11.052 13.771 1.00 24.99 ATOM 113 O GLU L 13 33.772 10.871 14.400 1.00 24.71 ATOM 114 CB GLU L 13 33.365 11.946 11.672 1.00 28.20 ATOM 115 CG GLU L 13 33.210 12.987 10.593 1.00 36.75 ATOM 116 CD GLU L 13 33.676 12.450 9.213 1.00 41.25 ATOM 117 OE1 GLU L 13 34.188 11.285 9.127 1.00 39.61 ATOM 118 OE2 GLU L 13 33.471 13.184 8.222 1.00 43.98 ATOM 119 N ASP L 14 31.700 10.159 13.722 1.00 22.05 ATOM 120 CA ASP L 14 31.897 8.817 14.270 1.00 20.56 ATOM 121 C ASP L 14 32.742 7.924 13.343 1.00 21.78 ATOM 122 O ASP L 14 33.004 8.259 12.179 1.00 21.44 ATOM 123 CB ASP L 14 30.553 8.167 14.720 1.00 19.85 ATOM 124 CG ASP L 14 29.701 7.678 13.569 1.00 19.47 ATOM 125 OD1 ASP L 14 30.147 6.878 12.727 1.00 19.70 ATOM 126 OD2 ASP L 14 28.541 8.067 13.538 1.00 20.21 ATOM 127 N LYS L 14A 33.151 6.769 13.849 1.00 23.87 ATOM 128 CA LYS L 14A 34.125 5.917 13.132 1.00 27.03 ATOM 129 C LYS L 14A 33.677 5.247 11.837 1.00 29.18 ATOM 130 O LYS L 14A 34.519 4.880 11.035 1.00 29.14 ATOM 131 CB LYS L 14A 34.772 4.907 14.102 1.00 33.70 ATOM 132 CG LYS L 14A 35.627 5.642 15.146 1.00 37.95 ATOM 133 CD LYS L 14A 36.417 4.781 16.106 1.00 43.13 ATOM 134 CE LYS L 14A 35.521 3.972 17.022 1.00 49.36 ATOM 135 NZ LYS L 14A 36.170 3.768 18.350 1.00 51.58 ATOM 136 N THR L 14B 32.370 5.122 11.591 1.00 29.25 ATOM 137 CA THR L 14B 31.874 4.461 10.379 1.00 25.44 ATOM 138 C THR L 14B 30.817 5.262 9.607 1.00 23.78 ATOM 139 O THR L 14B 30.294 4.771 8.610 1.00 25.40 ATOM 140 CB THR L 14B 31.338 3.047 10.678 1.00 29.91 ATOM 141 OG1 THR L 14B 30.145 3.104 11.452 1.00 26.98 ATOM 142 CG2 THR L 14B 32.385 2.187 11.413 1.00 32.58 ATOM 143 N GLU L 14C 30.525 6.508 10.002 1.00 21.88 ATOM 144 CA GLU L 14C 29.535 7.257 9.247 1.00 23.22 ATOM 145 C GLU L 14C 29.934 7.499 7.787 1.00 25.48 ATOM 146 O GLU L 14C 29.066 7.618 6.928 1.00 23.30 ATOM 147 CB GLU L 14C 29.142 8.540 9.943 1.00 24.85 ATOM 148 CG GLU L 14C 30.226 9.616 10.043 1.00 24.90 ATOM 149 CD GLU L 14C 29.678 10.884 10.622 1.00 25.22 ATOM 150 OE1 GLU L 14C 29.706 11.011 11.858 1.00 27.34 ATOM 151 OE2 GLU L 14C 29.209 11.779 9.866 1.00 24.34 ATOM 152 N ARG L 14D 31.236 7.660 7.539 1.00 27.98 ATOM 153 CA ARG L 14D 31.774 7.725 6.161 1.00 31.93 ATOM 154 C ARG L 14D 31.287 6.599 5.255 1.00 28.27 ATOM 155 O ARG L 14D 31.099 6.844 4.084 1.00 30.92 ATOM 156 CB ARG L 14D 33.315 7.763 6.099 1.00 38.50 ATOM 157 CG ARG L 14D 34.031 7.299 7.373 1.00 46.73 ATOM 158 CD ARG L 14D 35.143 6.270 7.273 1.00 50.45 ATOM 159 NE ARG L 14D 34.671 4.957 7.716 1.00 49.90 ATOM 160 CZ ARG L 14D 34.427 3.907 6.936 1.00 53.45 ATOM 161 NH1 ARG L 14D 34.591 3.957 5.607 1.00 57.56 ATOM 162 NH2 ARG L 14D 34.012 2.773 7.503 1.00 60.01 ATOM 163 N GLU L 14E 31.144 5.381 5.792 1.00 25.29 ATOM 164 CA GLU L 14E 30.686 4.245 5.028 1.00 25.35 ATOM 165 C GLU L 14E 29.280 4.475 4.479 1.00 24.31 ATOM 166 O GLU L 14E 29.045 4.208 3.288 1.00 23.77 ATOM 167 CB GLU L 14E 30.712 2.977 5.859 1.00 26.46 ATOM 168 CG GLU L 14E 30.280 1.772 5.071 1.00 26.70 ATOM 169 CD GLU L 14E 30.054 0.564 5.946 1.00 26.01 ATOM 170 OE1 GLU L 14E 30.375 0.611 7.138 1.00 26.50 ATOM 171 OE2 GLU L 14E 29.553 -0.443 5.421 1.00 28.18 ATOM 172 N LEU L 14F 28.386 5.047 5.292 1.00 20.83 ATOM 173 CA LEU L 14F 27.067 5.487 4.771 1.00 20.66 ATOM 174 C LEU L 14F 27.126 6.538 3.698 1.00 19.37 ATOM 175 O LEU L 14F 26.533 6.397 2.646 1.00 20.21 ATOM 176 CB LEU L 14F 26.172 6.065 5.891 1.00 21.75 ATOM 177 CG LEU L 14F 26.096 5.222 7.146 1.00 23.20 ATOM 178 CD1 LEU L 14F 25.228 5.976 8.139 1.00 24.19 ATOM 179 CD2 LEU L 14F 25.639 3.821 6.867 1.00 25.58 ATOM 180 N LEU L 14G 27.830 7.631 3.982 1.00 20.77 ATOM 181 CA LEU L 14G 27.901 8.760 3.029 1.00 21.83 ATOM 182 C LEU L 14G 28.544 8.324 1.708 1.00 21.78 ATOM 183 O LEU L 14G 28.103 8.745 0.649 1.00 23.46 ATOM 184 CB LEU L 14G 28.564 9.987 3.657 1.00 24.44 ATOM 185 CG LEU L 14G 27.845 10.568 4.906 1.00 28.82 ATOM 186 CD1 LEU L 14G 28.789 11.525 5.620 1.00 36.21 ATOM 187 CD2 LEU L 14G 26.458 11.207 4.697 1.00 27.70 ATOM 188 N GLU L 14H 29.474 7.389 1.776 1.00 24.39 ATOM 189 CA GLU L 14H 30.092 6.829 0.571 1.00 28.20 ATOM 190 C GLU L 14H 29.166 5.967 -0.287 1.00 29.96 ATOM 191 O GLU L 14H 29.337 5.921 -1.487 1.00 27.64 ATOM 192 CB GLU L 14H 31.348 6.059 0.958 1.00 30.80 ATOM 193 CG GLU L 14H 32.495 7.020 1.317 1.00 37.61 ATOM 194 CD GLU L 14H 33.707 6.339 1.954 1.00 42.86 ATOM 195 OE1 GLU L 14H 33.667 5.087 2.122 1.00 45.02 ATOM 196 OE2 GLU L 14H 34.714 7.060 2.262 1.00 46.14 ATOM 197 N SER L 14I 28.163 5.327 0.330 1.00 24.68 ATOM 198 CA SER L 14I 27.225 4.450 -0.375 1.00 25.66 ATOM 199 C SER L 14I 26.280 5.242 -1.246 1.00 27.60 ATOM 200 O SER L 14I 25.697 4.715 -2.207 1.00 29.26 ATOM 201 CB SER L 14I 26.438 3.646 0.657 1.00 24.37 ATOM 202 OG SER L 14I 25.499 4.532 1.303 1.00 23.24 ATOM 203 N TYR L 14J 26.153 6.536 -0.938 1.00 29.74 ATOM 204 CA TYR L 14J 25.415 7.435 -1.789 1.00 31.51 ATOM 205 C TYR L 14J 26.119 7.698 -3.107 1.00 33.64 ATOM 206 O TYR L 14J 25.447 8.181 -4.008 1.00 46.10 ATOM 207 CB TYR L 14J 25.211 8.759 -1.129 1.00 35.02 ATOM 208 CG TYR L 14J 24.426 8.724 0.105 1.00 35.38 ATOM 209 CD1 TYR L 14J 23.326 7.859 0.237 1.00 36.30 ATOM 210 CD2 TYR L 14J 24.754 9.538 1.161 1.00 34.14 ATOM 211 CE1 TYR L 14J 22.610 7.827 1.385 1.00 39.00 ATOM 212 CE2 TYR L 14J 24.028 9.507 2.320 1.00 30.61 ATOM 213 CZ TYR L 14J 22.968 8.652 2.430 1.00 36.64 ATOM 214 OH TYR L 14J 22.200 8.621 3.551 1.00 33.39 ATOM 215 S DMS L 301 29.959 -1.545 10.990 0.81 32.93 ATOM 216 O DMS L 301 29.127 -1.876 9.819 0.81 26.86 ATOM 217 C1 DMS L 301 30.352 -2.988 11.777 0.81 32.27 ATOM 218 C2 DMS L 301 31.441 -0.972 10.432 0.81 33.81 ATOM 219 S DMS L 305 21.919 11.284 -2.735 1.00 49.69 ATOM 220 O DMS L 305 22.622 12.378 -3.418 1.00 54.27 ATOM 221 C1 DMS L 305 20.395 11.034 -3.454 1.00 44.78 ATOM 222 C2 DMS L 305 22.840 9.946 -3.201 1.00 53.03 TER