HEADER RNA BINDING PROTEIN 31-DEC-69 6EOJ TITLE PolyA polymerase module of the cleavage and polyadenylation factor TITLE 2 (CPF) from Saccharomyces cerevisiae COMPND MOL_ID: 2; COMPND 2 MOLECULE: mRNA 3'-end-processing protein YTH1; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 6EOJ B 2 208 UNP Q06102 YTH1_YEAST 2 208 SEQRES 1 B 35 PHE SER LEU ASP PRO ASP ARG PRO ILE CYS GLU PHE TYR SEQRES 2 B 35 ASN SER ARG GLU GLY PRO LYS SER CYS PRO ARG GLY PRO SEQRES 3 B 35 LEU CYS PRO LYS LYS HIS VAL LEU PRO ATOM 1 N PHE B 25 123.325 90.005 83.259 1.00 99.16 ATOM 2 CA PHE B 25 124.084 90.181 84.495 1.00 96.21 ATOM 3 C PHE B 25 123.654 89.171 85.565 1.00 93.68 ATOM 4 O PHE B 25 122.537 89.226 86.069 1.00 92.46 ATOM 5 CB PHE B 25 123.959 91.650 84.965 1.00 96.02 ATOM 6 CG PHE B 25 124.146 91.853 86.443 1.00 95.70 ATOM 7 CD1 PHE B 25 125.417 91.816 87.015 1.00 97.09 ATOM 8 CD2 PHE B 25 123.044 92.099 87.267 1.00 93.86 ATOM 9 CE1 PHE B 25 125.582 92.001 88.383 1.00 97.61 ATOM 10 CE2 PHE B 25 123.206 92.280 88.634 1.00 93.58 ATOM 11 CZ PHE B 25 124.477 92.230 89.193 1.00 95.50 ATOM 12 N SER B 26 124.547 88.244 85.899 1.00 96.31 ATOM 13 CA SER B 26 124.273 87.237 86.930 1.00100.02 ATOM 14 C SER B 26 124.778 87.687 88.301 1.00 99.45 ATOM 15 O SER B 26 125.486 88.693 88.411 1.00 98.35 ATOM 16 CB SER B 26 124.877 85.879 86.550 1.00104.02 ATOM 17 OG SER B 26 124.422 85.446 85.280 1.00105.67 ATOM 18 N LEU B 27 124.412 86.933 89.335 1.00101.94 ATOM 19 CA LEU B 27 124.781 87.256 90.713 1.00105.77 ATOM 20 C LEU B 27 126.225 86.915 91.095 1.00111.67 ATOM 21 O LEU B 27 126.710 87.340 92.149 1.00112.78 ATOM 22 CB LEU B 27 123.778 86.652 91.705 1.00104.13 ATOM 23 CG LEU B 27 122.561 87.498 92.124 1.00104.54 ATOM 24 CD1 LEU B 27 122.980 88.826 92.742 1.00102.92 ATOM 25 CD2 LEU B 27 121.551 87.729 91.003 1.00106.47 ATOM 26 N ASP B 28 126.897 86.144 90.241 1.00118.90 ATOM 27 CA ASP B 28 128.332 85.912 90.354 1.00124.41 ATOM 28 C ASP B 28 129.046 87.007 89.553 1.00123.00 ATOM 29 O ASP B 28 128.901 87.060 88.328 1.00125.09 ATOM 30 CB ASP B 28 128.709 84.511 89.848 1.00133.49 ATOM 31 CG ASP B 28 127.979 83.394 90.593 1.00139.74 ATOM 32 OD1 ASP B 28 128.117 83.296 91.834 1.00141.99 ATOM 33 OD2 ASP B 28 127.275 82.603 89.930 1.00140.13 ATOM 34 N PRO B 29 129.793 87.901 90.242 1.00120.80 ATOM 35 CA PRO B 29 130.421 89.068 89.597 1.00119.02 ATOM 36 C PRO B 29 131.473 88.714 88.539 1.00118.68 ATOM 37 O PRO B 29 131.280 89.035 87.363 1.00118.16 ATOM 38 CB PRO B 29 131.053 89.830 90.772 1.00120.36 ATOM 39 CG PRO B 29 131.195 88.819 91.859 1.00123.30 ATOM 40 CD PRO B 29 130.029 87.896 91.699 1.00121.58 ATOM 41 N ASP B 30 132.553 88.051 88.955 1.00121.21 ATOM 42 CA ASP B 30 133.659 87.696 88.062 1.00124.36 ATOM 43 C ASP B 30 133.593 86.236 87.594 1.00125.04 ATOM 44 O ASP B 30 134.566 85.476 87.700 1.00126.46 ATOM 45 CB ASP B 30 135.021 88.058 88.692 1.00127.11 ATOM 46 CG ASP B 30 135.211 87.471 90.086 1.00129.58 ATOM 47 OD1 ASP B 30 134.443 87.830 91.007 1.00129.94 ATOM 48 OD2 ASP B 30 136.147 86.662 90.261 1.00129.78 ATOM 49 N ARG B 31 132.424 85.863 87.071 1.00123.87 ATOM 50 CA ARG B 31 132.213 84.567 86.424 1.00125.11 ATOM 51 C ARG B 31 132.964 84.518 85.079 1.00128.96 ATOM 52 O ARG B 31 133.178 85.570 84.465 1.00128.24 ATOM 53 CB ARG B 31 130.707 84.284 86.256 1.00122.22 ATOM 54 CG ARG B 31 129.962 85.230 85.324 1.00119.23 ATOM 55 CD ARG B 31 128.467 85.238 85.589 1.00116.22 ATOM 56 NE ARG B 31 127.756 86.117 84.657 1.00114.55 ATOM 57 CZ ARG B 31 127.558 87.425 84.827 1.00113.64 ATOM 58 NH1 ARG B 31 128.009 88.054 85.906 1.00113.91 ATOM 59 NH2 ARG B 31 126.898 88.111 83.904 1.00113.94 ATOM 60 N PRO B 32 133.386 83.312 84.629 1.00133.93 ATOM 61 CA PRO B 32 134.112 83.213 83.349 1.00138.76 ATOM 62 C PRO B 32 133.268 83.579 82.123 1.00142.84 ATOM 63 O PRO B 32 132.039 83.496 82.170 1.00141.23 ATOM 64 CB PRO B 32 134.523 81.735 83.289 1.00138.08 ATOM 65 CG PRO B 32 133.579 81.032 84.204 1.00136.00 ATOM 66 CD PRO B 32 133.331 82.005 85.314 1.00134.37 ATOM 67 N ILE B 33 133.941 83.997 81.049 1.00149.21 ATOM 68 CA ILE B 33 133.295 84.273 79.761 1.00155.56 ATOM 69 C ILE B 33 132.984 82.927 79.098 1.00160.24 ATOM 70 O ILE B 33 133.878 82.083 78.947 1.00162.26 ATOM 71 CB ILE B 33 134.177 85.152 78.835 1.00156.37 ATOM 72 CG1 ILE B 33 134.753 86.357 79.599 1.00156.31 ATOM 73 CG2 ILE B 33 133.381 85.625 77.619 1.00157.86 ATOM 74 CD1 ILE B 33 136.105 86.832 79.103 1.00156.65 ATOM 75 N CYS B 34 131.721 82.733 78.712 1.00163.66 ATOM 76 CA CYS B 34 131.251 81.439 78.208 1.00169.08 ATOM 77 C CYS B 34 131.748 81.088 76.808 1.00176.04 ATOM 78 O CYS B 34 131.861 81.956 75.936 1.00176.58 ATOM 79 CB CYS B 34 129.723 81.324 78.283 1.00166.16 ATOM 80 SG CYS B 34 128.772 82.329 77.123 1.00162.41 ATOM 81 N GLU B 35 132.048 79.805 76.624 1.00185.00 ATOM 82 CA GLU B 35 132.492 79.259 75.345 1.00193.17 ATOM 83 C GLU B 35 131.317 79.106 74.377 1.00195.82 ATOM 84 O GLU B 35 130.159 79.020 74.805 1.00194.39 ATOM 85 CB GLU B 35 133.195 77.913 75.554 1.00199.57 ATOM 86 CG GLU B 35 134.549 78.013 76.249 1.00205.77 ATOM 87 CD GLU B 35 135.100 76.665 76.682 1.00209.59 ATOM 88 OE1 GLU B 35 134.449 75.979 77.500 1.00212.01 ATOM 89 OE2 GLU B 35 136.198 76.297 76.213 1.00210.12 ATOM 90 N PHE B 36 131.640 79.078 73.081 1.00202.99 ATOM 91 CA PHE B 36 130.673 78.943 71.972 1.00208.17 ATOM 92 C PHE B 36 129.644 80.081 71.916 1.00203.96 ATOM 93 O PHE B 36 128.451 79.858 71.674 1.00203.44 ATOM 94 CB PHE B 36 129.996 77.553 71.967 1.00218.34 ATOM 95 CG PHE B 36 130.963 76.400 71.942 1.00226.88 ATOM 96 CD1 PHE B 36 131.496 75.938 70.735 1.00230.33 ATOM 97 CD2 PHE B 36 131.336 75.759 73.129 1.00230.50 ATOM 98 CE1 PHE B 36 132.388 74.869 70.712 1.00234.44 ATOM 99 CE2 PHE B 36 132.228 74.691 73.111 1.00233.85 ATOM 100 CZ PHE B 36 132.754 74.245 71.902 1.00235.45 ATOM 101 N TYR B 37 130.130 81.302 72.137 1.00199.42 ATOM 102 CA TYR B 37 129.319 82.515 72.042 1.00196.88 ATOM 103 C TYR B 37 130.060 83.624 71.297 1.00198.89 ATOM 104 O TYR B 37 131.237 83.890 71.565 1.00199.49 ATOM 105 CB TYR B 37 128.879 82.990 73.438 1.00192.36 ATOM 106 CG TYR B 37 128.289 84.391 73.478 1.00190.30 ATOM 107 CD1 TYR B 37 127.014 84.655 72.960 1.00189.12 ATOM 108 CD2 TYR B 37 129.007 85.455 74.040 1.00189.76 ATOM 109 CE1 TYR B 37 126.477 85.937 72.993 1.00188.02 ATOM 110 CE2 TYR B 37 128.475 86.741 74.078 1.00189.18 ATOM 111 CZ TYR B 37 127.211 86.975 73.556 1.00188.29 ATOM 112 OH TYR B 37 126.678 88.243 73.593 1.00188.38 ATOM 113 N ASN B 38 129.352 84.255 70.363 1.00202.30 ATOM 114 CA ASN B 38 129.857 85.411 69.626 1.00205.49 ATOM 115 C ASN B 38 128.882 86.579 69.745 1.00206.86 ATOM 116 O ASN B 38 127.660 86.386 69.723 1.00205.57 ATOM 117 CB ASN B 38 130.097 85.055 68.156 1.00208.15 ATOM 118 CG ASN B 38 131.023 86.038 67.456 1.00209.94 ATOM 119 OD1 ASN B 38 132.130 86.316 67.921 1.00210.39 ATOM 120 ND2 ASN B 38 130.577 86.557 66.319 1.00210.60 ATOM 121 N SER B 39 129.438 87.784 69.866 1.00211.02 ATOM 122 CA SER B 39 128.666 89.012 70.087 1.00215.62 ATOM 123 C SER B 39 127.824 89.451 68.885 1.00221.29 ATOM 124 O SER B 39 126.795 90.111 69.058 1.00222.79 ATOM 125 CB SER B 39 129.595 90.153 70.510 1.00213.75 ATOM 126 OG SER B 39 130.318 89.819 71.682 1.00213.49 ATOM 127 N ARG B 40 128.267 89.078 67.683 1.00229.19 ATOM 128 CA ARG B 40 127.622 89.479 66.424 1.00236.44 ATOM 129 C ARG B 40 126.223 88.891 66.217 1.00237.63 ATOM 130 O ARG B 40 125.354 89.549 65.635 1.00238.21 ATOM 131 CB ARG B 40 128.519 89.146 65.221 1.00242.15 ATOM 132 CG ARG B 40 129.805 89.966 65.115 1.00247.13 ATOM 133 CD ARG B 40 129.576 91.364 64.546 1.00252.81 ATOM 134 NE ARG B 40 129.256 91.345 63.117 1.00257.23 ATOM 135 CZ ARG B 40 128.947 92.417 62.386 1.00259.57 ATOM 136 NH1 ARG B 40 128.905 93.629 62.930 1.00260.84 ATOM 137 NH2 ARG B 40 128.677 92.273 61.096 1.00260.13 ATOM 138 N GLU B 41 126.018 87.662 66.693 1.00236.51 ATOM 139 CA GLU B 41 124.733 86.962 66.558 1.00234.57 ATOM 140 C GLU B 41 123.804 87.215 67.749 1.00231.24 ATOM 141 O GLU B 41 122.628 87.540 67.562 1.00231.07 ATOM 142 CB GLU B 41 124.937 85.452 66.356 1.00235.97 ATOM 143 CG GLU B 41 125.582 85.052 65.034 1.00237.65 ATOM 144 CD GLU B 41 127.101 85.050 65.085 1.00238.43 ATOM 145 OE1 GLU B 41 127.678 84.251 65.855 1.00237.35 ATOM 146 OE2 GLU B 41 127.720 85.840 64.342 1.00240.10 ATOM 147 N GLY B 42 124.341 87.064 68.960 1.00228.44 ATOM 148 CA GLY B 42 123.579 87.246 70.197 1.00225.87 ATOM 149 C GLY B 42 123.271 85.928 70.896 1.00223.87 ATOM 150 O GLY B 42 124.143 85.057 70.967 1.00223.74 ATOM 151 N PRO B 43 122.027 85.769 71.409 1.00222.80 ATOM 152 CA PRO B 43 121.617 84.556 72.142 1.00221.66 ATOM 153 C PRO B 43 121.560 83.275 71.294 1.00220.55 ATOM 154 O PRO B 43 121.516 82.173 71.854 1.00220.11 ATOM 155 CB PRO B 43 120.220 84.913 72.662 1.00221.80 ATOM 156 CG PRO B 43 119.720 85.958 71.725 1.00222.23 ATOM 157 CD PRO B 43 120.931 86.757 71.349 1.00222.95 ATOM 158 N LYS B 44 121.562 83.430 69.969 1.00219.29 ATOM 159 CA LYS B 44 121.519 82.307 69.025 1.00217.74 ATOM 160 C LYS B 44 122.812 81.484 68.981 1.00213.83 ATOM 161 O LYS B 44 122.772 80.289 68.671 1.00214.06 ATOM 162 CB LYS B 44 121.166 82.803 67.615 1.00221.74 ATOM 163 CG LYS B 44 119.701 83.185 67.409 1.00225.55 ATOM 164 CD LYS B 44 118.804 81.985 67.116 1.00229.58 ATOM 165 CE LYS B 44 118.808 81.603 65.641 1.00232.21 ATOM 166 NZ LYS B 44 117.970 80.402 65.374 1.00233.16 ATOM 167 N SER B 45 123.941 82.128 69.286 1.00208.63 ATOM 168 CA SER B 45 125.260 81.482 69.283 1.00203.94 ATOM 169 C SER B 45 125.432 80.450 70.401 1.00199.62 ATOM 170 O SER B 45 125.889 79.331 70.149 1.00200.29 ATOM 171 CB SER B 45 126.381 82.527 69.350 1.00205.50 ATOM 172 OG SER B 45 126.600 83.126 68.087 1.00205.76 ATOM 173 N CYS B 46 125.061 80.836 71.623 1.00193.33 ATOM 174 CA CYS B 46 125.205 79.982 72.801 1.00189.08 ATOM 175 C CYS B 46 124.094 78.928 72.881 1.00188.15 ATOM 176 O CYS B 46 122.917 79.264 72.700 1.00186.04 ATOM 177 CB CYS B 46 125.232 80.830 74.075 1.00183.86 ATOM 178 SG CYS B 46 125.715 79.942 75.576 1.00180.34 ATOM 179 N PRO B 47 124.466 77.650 73.137 1.00189.07 ATOM 180 CA PRO B 47 123.480 76.577 73.342 1.00189.20 ATOM 181 C PRO B 47 122.641 76.753 74.614 1.00187.55 ATOM 182 O PRO B 47 121.482 76.328 74.646 1.00188.37 ATOM 183 CB PRO B 47 124.345 75.311 73.437 1.00191.18 ATOM 184 CG PRO B 47 125.706 75.792 73.807 1.00189.75 ATOM 185 CD PRO B 47 125.844 77.120 73.127 1.00189.59 ATOM 186 N ARG B 48 123.233 77.370 75.638 1.00183.16 ATOM 187 CA ARG B 48 122.557 77.650 76.909 1.00179.48 ATOM 188 C ARG B 48 121.542 78.787 76.770 1.00177.60 ATOM 189 O ARG B 48 120.490 78.767 77.419 1.00177.19 ATOM 190 CB ARG B 48 123.578 77.972 78.007 1.00178.39 ATOM 191 CG ARG B 48 124.545 76.839 78.325 1.00179.10 ATOM 192 CD ARG B 48 125.565 77.261 79.370 1.00180.45 ATOM 193 NE ARG B 48 126.655 76.293 79.505 1.00181.48 ATOM 194 CZ ARG B 48 127.838 76.383 78.898 1.00182.21 ATOM 195 NH1 ARG B 48 128.119 77.402 78.091 1.00183.12 ATOM 196 NH2 ARG B 48 128.751 75.443 79.099 1.00182.98 ATOM 197 N GLY B 49 121.868 79.767 75.927 1.00175.50 ATOM 198 CA GLY B 49 120.973 80.881 75.608 1.00172.91 ATOM 199 C GLY B 49 121.050 82.046 76.584 1.00171.03 ATOM 200 O GLY B 49 122.145 82.387 77.044 1.00170.54 ATOM 201 N PRO B 50 119.890 82.668 76.900 1.00171.00 ATOM 202 CA PRO B 50 119.834 83.816 77.818 1.00169.73 ATOM 203 C PRO B 50 120.082 83.439 79.280 1.00167.28 ATOM 204 O PRO B 50 120.718 84.205 80.007 1.00167.62 ATOM 205 CB PRO B 50 118.402 84.350 77.641 1.00171.36 ATOM 206 CG PRO B 50 117.869 83.687 76.414 1.00173.56 ATOM 207 CD PRO B 50 118.554 82.359 76.361 1.00173.17 ATOM 208 N LEU B 51 119.596 82.266 79.693 1.00166.07 ATOM 209 CA LEU B 51 119.766 81.766 81.064 1.00165.87 ATOM 210 C LEU B 51 121.140 81.105 81.283 1.00163.83 ATOM 211 O LEU B 51 121.255 80.081 81.970 1.00163.33 ATOM 212 CB LEU B 51 118.618 80.810 81.429 1.00169.49 ATOM 213 CG LEU B 51 117.226 81.393 81.701 1.00170.71 ATOM 214 CD1 LEU B 51 116.145 80.394 81.317 1.00171.65 ATOM 215 CD2 LEU B 51 117.068 81.828 83.152 1.00170.37 ATOM 216 N CYS B 52 122.173 81.714 80.703 1.00162.17 ATOM 217 CA CYS B 52 123.541 81.211 80.764 1.00162.59 ATOM 218 C CYS B 52 124.185 81.555 82.111 1.00162.24 ATOM 219 O CYS B 52 124.209 82.731 82.494 1.00161.55 ATOM 220 CB CYS B 52 124.363 81.787 79.608 1.00163.98 ATOM 221 SG CYS B 52 125.959 80.989 79.314 1.00164.23 ATOM 222 N PRO B 53 124.700 80.532 82.837 1.00162.86 ATOM 223 CA PRO B 53 125.370 80.724 84.135 1.00162.45 ATOM 224 C PRO B 53 126.637 81.577 84.041 1.00159.32 ATOM 225 O PRO B 53 126.969 82.290 84.991 1.00160.26 ATOM 226 CB PRO B 53 125.728 79.295 84.566 1.00165.08 ATOM 227 CG PRO B 53 124.791 78.421 83.809 1.00166.16 ATOM 228 CD PRO B 53 124.626 79.101 82.486 1.00164.60 ATOM 229 N LYS B 54 127.327 81.486 82.905 1.00155.60 ATOM 230 CA LYS B 54 128.489 82.320 82.603 1.00154.75 ATOM 231 C LYS B 54 128.049 83.589 81.860 1.00151.66 ATOM 232 O LYS B 54 126.906 83.675 81.397 1.00151.74 ATOM 233 CB LYS B 54 129.507 81.528 81.780 1.00159.53 ATOM 234 CG LYS B 54 130.196 80.393 82.524 1.00162.63 ATOM 235 CD LYS B 54 131.081 79.588 81.585 1.00162.82 ATOM 236 CE LYS B 54 131.633 78.348 82.269 1.00164.67 ATOM 237 NZ LYS B 54 132.435 77.514 81.331 1.00166.06 ATOM 238 N LYS B 55 128.956 84.562 81.746 1.00148.52 ATOM 239 CA LYS B 55 128.621 85.881 81.186 1.00144.91 ATOM 240 C LYS B 55 128.716 86.011 79.666 1.00141.71 ATOM 241 O LYS B 55 129.496 85.313 79.012 1.00141.54 ATOM 242 CB LYS B 55 129.415 87.009 81.862 1.00144.93 ATOM 243 CG LYS B 55 130.927 86.846 81.914 1.00145.93 ATOM 244 CD LYS B 55 131.581 88.115 82.442 1.00147.01 ATOM 245 CE LYS B 55 131.369 88.309 83.938 1.00147.92 ATOM 246 NZ LYS B 55 131.504 89.727 84.363 1.00147.64 ATOM 247 N HIS B 56 127.905 86.927 79.138 1.00140.45 ATOM 248 CA HIS B 56 127.814 87.209 77.711 1.00139.23 ATOM 249 C HIS B 56 128.268 88.636 77.415 1.00136.70 ATOM 250 O HIS B 56 127.610 89.606 77.808 1.00136.32 ATOM 251 CB HIS B 56 126.377 86.982 77.226 1.00143.21 ATOM 252 CG HIS B 56 126.030 85.543 77.005 1.00146.72 ATOM 253 ND1 HIS B 56 125.258 85.122 75.945 1.00148.38 ATOM 254 CD2 HIS B 56 126.352 84.426 77.700 1.00149.89 ATOM 255 CE1 HIS B 56 125.118 83.809 75.998 1.00151.83 ATOM 256 NE2 HIS B 56 125.784 83.360 77.047 1.00152.89 ATOM 257 N VAL B 57 129.408 88.749 76.734 1.00135.80 ATOM 258 CA VAL B 57 129.965 90.048 76.335 1.00134.68 ATOM 259 C VAL B 57 129.200 90.645 75.151 1.00133.13 ATOM 260 O VAL B 57 129.075 90.018 74.093 1.00135.30 ATOM 261 CB VAL B 57 131.497 90.003 76.056 1.00135.89 ATOM 262 CG1 VAL B 57 132.281 90.026 77.360 1.00135.98 ATOM 263 CG2 VAL B 57 131.897 88.796 75.208 1.00138.21 ATOM 264 N LEU B 58 128.669 91.848 75.356 1.00130.67 ATOM 265 CA LEU B 58 127.947 92.585 74.317 1.00129.69 ATOM 266 C LEU B 58 128.934 93.271 73.357 1.00129.54 ATOM 267 O LEU B 58 130.072 93.545 73.754 1.00129.83 ATOM 268 CB LEU B 58 126.987 93.606 74.950 1.00129.86 ATOM 269 CG LEU B 58 125.685 93.088 75.576 1.00131.29 ATOM 270 CD1 LEU B 58 125.848 92.789 77.061 1.00131.00 ATOM 271 CD2 LEU B 58 124.565 94.096 75.367 1.00132.27 ATOM 272 N PRO B 59 128.512 93.542 72.092 1.00130.61 ATOM 273 CA PRO B 59 129.393 94.195 71.101 1.00131.61 ATOM 274 C PRO B 59 129.944 95.557 71.536 1.00131.70 ATOM 275 O PRO B 59 131.012 95.965 71.069 1.00132.93 ATOM 276 CB PRO B 59 128.483 94.372 69.882 1.00133.95 ATOM 277 CG PRO B 59 127.468 93.295 70.015 1.00133.99 ATOM 278 CD PRO B 59 127.214 93.174 71.487 1.00131.81 ATOM 279 ZN ZN B 302 126.596 81.469 77.114 1.00163.33 TER