HEADER HYDROLASE 31-DEC-69 6GWE TITLE Crystal structure of Thrombin bound to P2 macrocycle COMPND MOL_ID: 1; COMPND 2 MOLECULE: Prothrombin; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.5; COMPND 5 MOL_ID: 2; COMPND 6 Prothrombin; COMPND 7 CHAIN: L; COMPND 8 EC: 3.4.21.5; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.30 ANGSTORMS DBREF 6GWE A 16 245 UNP P00734 THRB_HUMAN 364 620 DBREF 6GWE L 1 14 UNP P00734 THRB_HUMAN 333 362 SEQRES 1 L 30 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 L 30 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 L 30 TYR ILE ASP GLY ATOM 1 N GLU L 1C -6.703 21.428 45.601 1.00 60.51 ATOM 2 CA GLU L 1C -5.907 20.955 46.736 1.00 63.34 ATOM 3 C GLU L 1C -5.017 22.073 47.287 1.00 55.64 ATOM 4 O GLU L 1C -4.255 22.687 46.546 1.00 62.95 ATOM 5 CB GLU L 1C -5.043 19.756 46.334 1.00 43.63 ATOM 6 CG GLU L 1C -5.819 18.465 46.050 1.00 71.20 ATOM 7 CD GLU L 1C -5.493 17.359 47.046 1.00 76.06 ATOM 8 OE1 GLU L 1C -4.736 17.644 48.006 1.00 63.83 ATOM 9 OE2 GLU L 1C -5.977 16.210 46.862 1.00 77.76 ATOM 10 N ALA L 1B -5.116 22.310 48.599 1.00 60.19 ATOM 11 CA ALA L 1B -4.357 23.377 49.246 1.00 56.12 ATOM 12 C ALA L 1B -2.867 23.275 48.959 1.00 54.70 ATOM 13 O ALA L 1B -2.188 24.299 48.815 1.00 55.14 ATOM 14 CB ALA L 1B -4.592 23.343 50.758 1.00 52.39 ATOM 15 N ASP L 1A -2.345 22.056 48.863 1.00 46.82 ATOM 16 CA ASP L 1A -0.917 21.818 48.732 1.00 41.07 ATOM 17 C ASP L 1A -0.483 21.483 47.304 1.00 33.35 ATOM 18 O ASP L 1A 0.684 21.127 47.095 1.00 31.09 ATOM 19 CB ASP L 1A -0.513 20.682 49.670 1.00 44.43 ATOM 20 CG ASP L 1A 0.917 20.790 50.115 1.00 56.37 ATOM 21 OD1 ASP L 1A 1.456 21.923 50.096 1.00 54.72 ATOM 22 OD2 ASP L 1A 1.501 19.742 50.474 1.00 63.39 ATOM 23 N CYS L 1 -1.388 21.573 46.327 1.00 29.59 ATOM 24 CA CYS L 1 -1.052 21.146 44.970 1.00 30.20 ATOM 25 C CYS L 1 0.166 21.892 44.449 1.00 36.10 ATOM 26 O CYS L 1 0.436 23.038 44.830 1.00 35.38 ATOM 27 CB CYS L 1 -2.226 21.357 44.014 1.00 29.17 ATOM 28 SG CYS L 1 -2.707 23.101 43.744 1.00 30.74 ATOM 29 N GLY L 2 0.915 21.220 43.580 1.00 32.14 ATOM 30 CA GLY L 2 1.950 21.859 42.794 1.00 28.72 ATOM 31 C GLY L 2 3.235 22.206 43.521 1.00 38.78 ATOM 32 O GLY L 2 4.140 22.766 42.890 1.00 33.14 ATOM 33 N LEU L 3 3.355 21.901 44.814 1.00 31.79 ATOM 34 CA LEU L 3 4.604 22.084 45.554 1.00 40.14 ATOM 35 C LEU L 3 5.245 20.721 45.784 1.00 42.89 ATOM 36 O LEU L 3 4.690 19.888 46.508 1.00 37.74 ATOM 37 CB LEU L 3 4.359 22.790 46.892 1.00 37.98 ATOM 38 CG LEU L 3 3.709 24.170 46.814 1.00 39.84 ATOM 39 CD1 LEU L 3 3.436 24.673 48.215 1.00 43.23 ATOM 40 CD2 LEU L 3 4.589 25.163 46.000 1.00 31.68 ATOM 41 N ARG L 4 6.419 20.513 45.199 1.00 38.22 ATOM 42 CA ARG L 4 7.024 19.188 45.169 1.00 39.15 ATOM 43 C ARG L 4 7.780 18.908 46.468 1.00 47.28 ATOM 44 O ARG L 4 8.657 19.697 46.853 1.00 33.37 ATOM 45 CB ARG L 4 7.966 19.057 43.974 1.00 32.41 ATOM 46 CG ARG L 4 7.276 19.158 42.601 1.00 36.18 ATOM 47 CD ARG L 4 8.307 19.252 41.470 1.00 33.87 ATOM 48 NE ARG L 4 9.088 20.491 41.549 1.00 28.39 ATOM 49 CZ ARG L 4 10.086 20.806 40.728 1.00 35.68 ATOM 50 NH1 ARG L 4 10.740 21.947 40.894 1.00 37.60 ATOM 51 NH2 ARG L 4 10.449 19.982 39.747 1.00 33.91 ATOM 52 N PRO L 5 7.478 17.792 47.157 1.00 47.95 ATOM 53 CA PRO L 5 8.208 17.456 48.397 1.00 40.77 ATOM 54 C PRO L 5 9.715 17.526 48.263 1.00 39.46 ATOM 55 O PRO L 5 10.385 18.019 49.177 1.00 41.83 ATOM 56 CB PRO L 5 7.732 16.024 48.698 1.00 36.49 ATOM 57 CG PRO L 5 6.344 15.985 48.155 1.00 36.65 ATOM 58 CD PRO L 5 6.410 16.821 46.868 1.00 39.64 ATOM 59 N LEU L 6 10.277 17.084 47.146 1.00 31.47 ATOM 60 CA LEU L 6 11.726 17.073 47.025 1.00 37.00 ATOM 61 C LEU L 6 12.297 18.339 46.399 1.00 41.90 ATOM 62 O LEU L 6 13.508 18.397 46.147 1.00 40.76 ATOM 63 CB LEU L 6 12.169 15.852 46.215 1.00 36.95 ATOM 64 CG LEU L 6 11.773 14.518 46.857 1.00 41.81 ATOM 65 CD1 LEU L 6 12.413 13.390 46.096 1.00 39.16 ATOM 66 CD2 LEU L 6 12.154 14.460 48.347 1.00 33.82 ATOM 67 N PHE L 7 11.474 19.349 46.129 1.00 36.76 ATOM 68 CA PHE L 7 12.025 20.533 45.490 1.00 35.82 ATOM 69 C PHE L 7 11.526 21.784 46.194 1.00 45.03 ATOM 70 O PHE L 7 12.190 22.248 47.127 1.00 45.61 ATOM 71 CB PHE L 7 11.725 20.502 43.985 1.00 36.40 ATOM 72 CG PHE L 7 12.598 19.527 43.253 1.00 32.72 ATOM 73 CD1 PHE L 7 12.201 18.206 43.095 1.00 34.05 ATOM 74 CD2 PHE L 7 13.859 19.905 42.805 1.00 36.46 ATOM 75 CE1 PHE L 7 13.038 17.277 42.465 1.00 34.56 ATOM 76 CE2 PHE L 7 14.690 19.006 42.178 1.00 41.79 ATOM 77 CZ PHE L 7 14.284 17.679 42.005 1.00 40.82 ATOM 78 N GLU L 8 10.364 22.319 45.801 1.00 38.52 ATOM 79 CA GLU L 8 9.889 23.560 46.417 1.00 38.48 ATOM 80 C GLU L 8 9.876 23.460 47.938 1.00 39.05 ATOM 81 O GLU L 8 10.195 24.433 48.637 1.00 44.30 ATOM 82 CB GLU L 8 8.489 23.927 45.904 1.00 35.10 ATOM 83 CG GLU L 8 8.470 24.496 44.485 1.00 36.47 ATOM 84 CD GLU L 8 8.682 23.430 43.406 1.00 36.23 ATOM 85 OE1 GLU L 8 8.435 22.227 43.674 1.00 32.66 ATOM 86 OE2 GLU L 8 9.105 23.807 42.289 1.00 35.35 ATOM 87 N LYS L 9 9.542 22.281 48.469 1.00 44.73 ATOM 88 CA LYS L 9 9.349 22.133 49.907 1.00 45.15 ATOM 89 C LYS L 9 10.658 22.031 50.671 1.00 42.91 ATOM 90 O LYS L 9 10.672 22.261 51.882 1.00 44.88 ATOM 91 CB LYS L 9 8.467 20.916 50.188 1.00 40.67 ATOM 92 CG LYS L 9 7.008 21.261 50.071 1.00 48.01 ATOM 93 CD LYS L 9 6.111 20.055 50.140 1.00 54.26 ATOM 94 CE LYS L 9 4.737 20.477 50.620 1.00 59.98 ATOM 95 NZ LYS L 9 3.729 19.431 50.355 1.00 52.91 ATOM 96 N LYS L 10 11.746 21.687 49.994 1.00 41.91 ATOM 97 CA LYS L 10 13.074 21.758 50.576 1.00 41.89 ATOM 98 C LYS L 10 13.864 22.949 50.023 1.00 45.44 ATOM 99 O LYS L 10 15.095 22.970 50.109 1.00 42.89 ATOM 100 CB LYS L 10 13.799 20.427 50.343 1.00 56.18 ATOM 101 CG LYS L 10 12.969 19.208 50.811 1.00 44.36 ATOM 102 CD LYS L 10 13.809 17.998 51.232 1.00 46.20 ATOM 103 CE LYS L 10 13.843 16.895 50.177 1.00 62.96 ATOM 104 NZ LYS L 10 15.210 16.280 49.963 1.00 67.63 ATOM 105 N SER L 11 13.163 23.945 49.454 1.00 43.14 ATOM 106 CA SER L 11 13.778 25.126 48.824 1.00 43.60 ATOM 107 C SER L 11 14.910 24.747 47.875 1.00 38.70 ATOM 108 O SER L 11 15.921 25.441 47.766 1.00 46.33 ATOM 109 CB SER L 11 14.265 26.129 49.870 1.00 44.44 ATOM 110 OG SER L 11 13.183 26.573 50.664 1.00 47.78 ATOM 111 N LEU L 12 14.733 23.635 47.175 1.00 45.69 ATOM 112 CA LEU L 12 15.641 23.204 46.127 1.00 41.62 ATOM 113 C LEU L 12 14.997 23.455 44.767 1.00 52.15 ATOM 114 O LEU L 12 13.773 23.376 44.602 1.00 48.52 ATOM 115 CB LEU L 12 16.002 21.715 46.272 1.00 47.19 ATOM 116 CG LEU L 12 16.612 21.309 47.619 1.00 58.23 ATOM 117 CD1 LEU L 12 16.868 19.794 47.747 1.00 48.38 ATOM 118 CD2 LEU L 12 17.896 22.117 47.859 1.00 55.87 ATOM 119 N GLU L 13 15.844 23.745 43.795 1.00 38.19 ATOM 120 CA GLU L 13 15.427 24.108 42.458 1.00 43.17 ATOM 121 C GLU L 13 15.871 22.992 41.519 1.00 40.96 ATOM 122 O GLU L 13 16.955 22.431 41.693 1.00 46.74 ATOM 123 CB GLU L 13 16.022 25.493 42.115 1.00 36.36 ATOM 124 CG GLU L 13 16.414 25.791 40.671 1.00 50.58 ATOM 125 CD GLU L 13 16.803 27.268 40.487 1.00 55.26 ATOM 126 OE1 GLU L 13 17.417 27.623 39.451 1.00 62.08 ATOM 127 OE2 GLU L 13 16.489 28.076 41.393 1.00 40.73 ATOM 128 N ASP L 14 15.013 22.600 40.572 1.00 35.56 ATOM 129 CA ASP L 14 15.499 21.534 39.705 1.00 35.69 ATOM 130 C ASP L 14 16.381 22.129 38.610 1.00 34.66 ATOM 131 O ASP L 14 16.482 23.347 38.455 1.00 42.95 ATOM 132 CB ASP L 14 14.346 20.672 39.142 1.00 38.84 ATOM 133 CG ASP L 14 13.489 21.381 38.053 1.00 39.55 ATOM 134 OD1 ASP L 14 14.036 21.912 37.056 1.00 30.83 ATOM 135 OD2 ASP L 14 12.242 21.351 38.185 1.00 31.92 ATOM 136 N LYS L 14A 16.998 21.246 37.825 1.00 37.65 ATOM 137 CA LYS L 14A 18.080 21.647 36.932 1.00 37.98 ATOM 138 C LYS L 14A 17.654 22.577 35.799 1.00 37.28 ATOM 139 O LYS L 14A 18.524 23.215 35.199 1.00 34.01 ATOM 140 CB LYS L 14A 18.749 20.408 36.327 1.00 43.24 ATOM 141 CG LYS L 14A 19.805 19.803 37.224 1.00 52.42 ATOM 142 CD LYS L 14A 20.300 18.472 36.687 1.00 68.18 ATOM 143 CE LYS L 14A 21.061 17.694 37.761 1.00 57.99 ATOM 144 NZ LYS L 14A 21.543 16.398 37.226 1.00 72.25 ATOM 145 N THR L 14B 16.368 22.657 35.449 1.00 36.76 ATOM 146 CA THR L 14B 15.995 23.477 34.299 1.00 34.30 ATOM 147 C THR L 14B 14.796 24.388 34.520 1.00 34.32 ATOM 148 O THR L 14B 14.401 25.082 33.578 1.00 38.57 ATOM 149 CB THR L 14B 15.700 22.613 33.056 1.00 35.80 ATOM 150 OG1 THR L 14B 14.464 21.918 33.255 1.00 38.21 ATOM 151 CG2 THR L 14B 16.829 21.616 32.760 1.00 38.48 ATOM 152 N GLU L 14C 14.203 24.408 35.714 1.00 26.64 ATOM 153 CA GLU L 14C 13.082 25.307 35.942 1.00 33.21 ATOM 154 C GLU L 14C 13.472 26.769 35.687 1.00 44.55 ATOM 155 O GLU L 14C 12.631 27.567 35.257 1.00 34.04 ATOM 156 CB GLU L 14C 12.532 25.114 37.348 1.00 30.49 ATOM 157 CG GLU L 14C 13.513 25.361 38.476 1.00 32.48 ATOM 158 CD GLU L 14C 12.826 25.220 39.820 1.00 35.43 ATOM 159 OE1 GLU L 14C 12.900 24.132 40.447 1.00 34.15 ATOM 160 OE2 GLU L 14C 12.174 26.196 40.235 1.00 35.59 ATOM 161 N ARG L 14D 14.751 27.112 35.885 1.00 38.36 ATOM 162 CA ARG L 14D 15.241 28.451 35.571 1.00 34.67 ATOM 163 C ARG L 14D 14.992 28.817 34.106 1.00 43.30 ATOM 164 O ARG L 14D 14.641 29.965 33.796 1.00 39.00 ATOM 165 CB ARG L 14D 16.729 28.541 35.917 1.00 43.90 ATOM 166 CG ARG L 14D 17.522 29.617 35.185 1.00 54.00 ATOM 167 CD ARG L 14D 17.479 30.929 35.947 1.00 66.76 ATOM 168 NE ARG L 14D 17.889 30.767 37.340 1.00 93.09 ATOM 169 CZ ARG L 14D 19.121 30.985 37.794 1.00102.19 ATOM 170 NH1 ARG L 14D 20.081 31.394 36.966 1.00 85.57 ATOM 171 NH2 ARG L 14D 19.390 30.800 39.084 1.00 88.38 ATOM 172 N GLU L 14E 15.145 27.851 33.191 1.00 40.76 ATOM 173 CA GLU L 14E 14.804 28.110 31.794 1.00 38.41 ATOM 174 C GLU L 14E 13.343 28.539 31.656 1.00 40.21 ATOM 175 O GLU L 14E 13.028 29.446 30.875 1.00 37.34 ATOM 176 CB GLU L 14E 15.103 26.879 30.932 1.00 35.83 ATOM 177 CG GLU L 14E 14.718 27.031 29.468 1.00 33.78 ATOM 178 CD GLU L 14E 14.781 25.721 28.672 1.00 35.35 ATOM 179 OE1 GLU L 14E 15.084 24.649 29.244 1.00 46.37 ATOM 180 OE2 GLU L 14E 14.548 25.769 27.453 1.00 36.36 ATOM 181 N LEU L 14F 12.440 27.927 32.430 1.00 35.41 ATOM 182 CA LEU L 14F 11.036 28.331 32.368 1.00 36.99 ATOM 183 C LEU L 14F 10.842 29.753 32.899 1.00 44.11 ATOM 184 O LEU L 14F 10.133 30.570 32.286 1.00 29.26 ATOM 185 CB LEU L 14F 10.166 27.341 33.146 1.00 37.20 ATOM 186 CG LEU L 14F 10.301 25.857 32.768 1.00 35.70 ATOM 187 CD1 LEU L 14F 9.322 25.021 33.557 1.00 27.63 ATOM 188 CD2 LEU L 14F 10.085 25.662 31.275 1.00 25.55 ATOM 189 N LEU L 14G 11.458 30.061 34.050 1.00 37.05 ATOM 190 CA LEU L 14G 11.308 31.391 34.632 1.00 42.86 ATOM 191 C LEU L 14G 11.886 32.456 33.695 1.00 43.21 ATOM 192 O LEU L 14G 11.271 33.508 33.473 1.00 34.03 ATOM 193 CB LEU L 14G 11.966 31.431 36.016 1.00 35.41 ATOM 194 CG LEU L 14G 12.172 32.837 36.613 1.00 41.45 ATOM 195 CD1 LEU L 14G 10.827 33.454 37.001 1.00 39.58 ATOM 196 CD2 LEU L 14G 13.119 32.830 37.826 1.00 44.83 ATOM 197 N GLU L 14H 13.026 32.158 33.067 1.00 37.17 ATOM 198 CA GLU L 14H 13.620 33.091 32.122 1.00 40.84 ATOM 199 C GLU L 14H 12.726 33.327 30.904 1.00 50.35 ATOM 200 O GLU L 14H 12.706 34.438 30.364 1.00 43.05 ATOM 201 CB GLU L 14H 14.992 32.581 31.699 1.00 41.51 ATOM 202 CG GLU L 14H 16.017 32.729 32.805 1.00 48.66 ATOM 203 CD GLU L 14H 17.375 32.184 32.430 1.00 55.73 ATOM 204 OE1 GLU L 14H 17.508 31.646 31.309 1.00 53.48 ATOM 205 OE2 GLU L 14H 18.304 32.296 33.262 1.00 59.77 ATOM 206 N SER L 14I 11.960 32.322 30.470 1.00 34.51 ATOM 207 CA SER L 14I 11.105 32.544 29.307 1.00 37.23 ATOM 208 C SER L 14I 10.017 33.589 29.563 1.00 36.86 ATOM 209 O SER L 14I 9.365 34.022 28.606 1.00 42.08 ATOM 210 CB SER L 14I 10.468 31.217 28.838 1.00 35.31 ATOM 211 OG SER L 14I 9.461 30.768 29.737 1.00 31.80 ATOM 212 N TYR L 14J 9.774 33.977 30.821 1.00 38.90 ATOM 213 CA TYR L 14J 8.794 35.025 31.084 1.00 53.86 ATOM 214 C TYR L 14J 9.357 36.421 30.845 1.00 47.78 ATOM 215 O TYR L 14J 8.580 37.376 30.781 1.00 47.60 ATOM 216 CB TYR L 14J 8.265 34.951 32.525 1.00 40.27 ATOM 217 CG TYR L 14J 7.625 33.645 32.949 1.00 40.64 ATOM 218 CD1 TYR L 14J 6.701 32.989 32.135 1.00 41.37 ATOM 219 CD2 TYR L 14J 7.932 33.072 34.194 1.00 44.60 ATOM 220 CE1 TYR L 14J 6.106 31.775 32.548 1.00 35.79 ATOM 221 CE2 TYR L 14J 7.345 31.870 34.611 1.00 39.59 ATOM 222 CZ TYR L 14J 6.441 31.225 33.790 1.00 37.59 ATOM 223 OH TYR L 14J 5.867 30.043 34.220 1.00 39.09 ATOM 224 N ILE L 14K 10.679 36.546 30.701 1.00 41.17 ATOM 225 CA ILE L 14K 11.380 37.820 30.642 1.00 49.73 ATOM 226 C ILE L 14K 12.060 37.970 29.290 1.00 61.09 ATOM 227 O ILE L 14K 11.677 38.821 28.478 1.00 60.12 ATOM 228 CB ILE L 14K 12.407 37.919 31.782 1.00 54.82 ATOM 229 CG1 ILE L 14K 11.764 37.483 33.102 1.00 60.32 ATOM 230 CG2 ILE L 14K 12.960 39.338 31.874 1.00 66.77 ATOM 231 CD1 ILE L 14K 10.680 38.436 33.592 1.00 50.81 ATOM 232 N ASP L 14L 13.088 37.151 29.055 1.00 63.84 ATOM 233 CA ASP L 14L 13.782 37.077 27.770 1.00 84.16 ATOM 234 C ASP L 14L 12.808 36.757 26.641 1.00 81.97 ATOM 235 O ASP L 14L 12.242 35.654 26.608 1.00 72.58 ATOM 236 CB ASP L 14L 14.886 36.001 27.804 1.00 82.90 ATOM 237 CG ASP L 14L 16.234 36.529 28.304 1.00 87.26 ATOM 238 OD1 ASP L 14L 17.047 35.694 28.765 1.00 80.90 ATOM 239 OD2 ASP L 14L 16.483 37.758 28.229 1.00 87.43 ATOM 240 N GLY L 14M 12.606 37.699 25.717 1.00 70.70 ATOM 241 CA GLY L 14M 11.839 37.420 24.515 1.00 61.42 ATOM 242 C GLY L 14M 12.501 36.355 23.648 1.00 55.79 ATOM 243 O GLY L 14M 11.838 35.510 23.032 1.00 54.33 ATOM 244 C1 EDO L 305 17.384 30.642 28.286 1.00 47.82 ATOM 245 O1 EDO L 305 16.501 31.731 28.587 1.00 56.00 ATOM 246 C2 EDO L 305 17.257 30.264 26.813 1.00 50.35 ATOM 247 O2 EDO L 305 17.080 28.840 26.732 1.00 53.52 TER