HEADER REPLICATION 31-DEC-69 6HMS TITLE Cryo-EM map of DNA polymerase D from Pyrococcus abyssi in complex TITLE 2 with DNA COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA polymerase II large subunit,DNA polymerase II large COMPND 3 subunit; COMPND 4 CHAIN: B; COMPND 5 EC: 2.7.7.7,3.1.11.1,2.7.7.7,3.1.11.1; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 6HMS B 1 955 UNP Q9V2F4 DP2L_PYRAB 1 955 DBREF 6HMS B 956 1270 UNP Q9V2F4 DP2L_PYRAB 1141 1455 SEQRES 1 B 216 GLY VAL ASP LYS LEU LYS GLY VAL MET GLY MET THR SER SEQRES 2 B 216 GLY TRP LYS MET PRO GLU PRO LEU GLU LYS GLY LEU LEU SEQRES 3 B 216 ARG ALA LYS ASN ASP VAL TYR VAL PHE LYS ASP GLY THR SEQRES 4 B 216 ILE ARG PHE ASP ALA THR ASP ALA PRO ILE THR HIS PHE SEQRES 5 B 216 ARG PRO ARG GLU ILE GLY VAL SER VAL GLU LYS LEU ARG SEQRES 6 B 216 GLU LEU GLY TYR THR HIS ASP PHE GLU GLY LYS PRO LEU SEQRES 7 B 216 VAL SER GLU ASP GLN ILE VAL GLU LEU LYS PRO GLN ASP SEQRES 8 B 216 ILE ILE LEU SER LYS GLU ALA GLY ARG TYR LEU LEU LYS SEQRES 9 B 216 VAL ALA LYS PHE VAL ASP ASP LEU LEU GLU LYS PHE TYR SEQRES 10 B 216 GLY LEU PRO ARG PHE TYR ASN ALA GLU LYS MET GLU ASP SEQRES 11 B 216 LEU ILE GLY HIS LEU VAL ILE GLY LEU ALA PRO HIS THR SEQRES 12 B 216 SER ALA GLY ILE VAL GLY ARG ILE ILE GLY PHE VAL ASP SEQRES 13 B 216 ALA LEU VAL GLY TYR ALA HIS PRO TYR PHE HIS ALA ALA SEQRES 14 B 216 LYS ARG ARG ASN CYS ASP GLY ASP GLU ASP ALA VAL MET SEQRES 15 B 216 LEU LEU LEU ASP ALA LEU LEU ASN PHE SER ARG TYR TYR SEQRES 16 B 216 LEU PRO GLU LYS ARG GLY GLY LYS MET ASP ALA PRO LEU SEQRES 17 B 216 VAL ILE THR THR ARG LEU ASP PRO ATOM 1 CA GLY B 782 182.291 179.538 148.155 1.00 74.31 ATOM 2 CA VAL B 783 178.883 177.899 147.625 1.00 68.24 ATOM 3 CA ASP B 784 178.571 174.173 147.006 1.00 70.99 ATOM 4 CA LYS B 785 176.154 174.157 144.072 1.00 57.59 ATOM 5 CA LEU B 786 173.186 176.244 143.042 1.00 42.26 ATOM 6 CA LYS B 787 170.905 173.585 141.587 1.00 38.68 ATOM 7 CA GLY B 788 167.686 175.103 140.300 1.00 33.46 ATOM 8 CA VAL B 789 164.528 173.238 139.330 1.00 34.00 ATOM 9 CA MET B 790 163.411 171.856 136.013 1.00 41.37 ATOM 10 CA GLY B 791 160.254 173.935 135.593 1.00 39.84 ATOM 11 CA MET B 792 157.656 176.049 137.374 1.00 38.79 ATOM 12 CA THR B 793 153.944 175.197 137.429 1.00 39.69 ATOM 13 CA SER B 794 152.707 178.759 137.584 1.00 36.98 ATOM 14 CA GLY B 795 151.751 181.195 134.880 1.00 40.76 ATOM 15 CA TRP B 796 153.916 183.639 136.809 1.00 39.95 ATOM 16 CA LYS B 797 157.058 181.432 136.728 1.00 37.06 ATOM 17 CA MET B 798 158.631 183.655 139.391 1.00 36.34 ATOM 18 CA PRO B 799 161.551 181.740 140.960 1.00 37.29 ATOM 19 CA GLU B 800 163.530 182.050 144.146 1.00 36.87 ATOM 20 CA PRO B 801 165.969 184.950 144.400 1.00 35.91 ATOM 21 CA LEU B 802 169.078 182.857 144.182 1.00 36.30 ATOM 22 CA GLU B 803 171.111 184.571 146.947 1.00 38.71 ATOM 23 CA LYS B 804 168.937 182.749 149.444 1.00 33.37 ATOM 24 CA GLY B 805 169.877 179.443 147.852 1.00 31.20 ATOM 25 CA LEU B 806 173.474 180.619 147.865 1.00 34.95 ATOM 26 CA LEU B 807 173.211 180.937 151.618 1.00 33.31 ATOM 27 CA ARG B 808 171.501 177.556 151.516 1.00 33.45 ATOM 28 CA ALA B 809 174.583 176.073 149.855 1.00 36.60 ATOM 29 CA LYS B 810 176.449 177.930 152.571 1.00 38.17 ATOM 30 CA ASN B 811 174.271 176.378 155.246 1.00 42.06 ATOM 31 CA ASP B 812 173.513 173.012 153.538 1.00 40.33 ATOM 32 CA VAL B 813 169.732 173.305 153.558 1.00 33.49 ATOM 33 CA TYR B 814 167.304 172.189 150.859 1.00 33.26 ATOM 34 CA VAL B 815 164.581 174.612 149.806 1.00 32.45 ATOM 35 CA PHE B 816 161.138 173.155 149.714 1.00 35.45 ATOM 36 CA LYS B 817 159.196 173.810 146.556 1.00 36.82 ATOM 37 CA ASP B 818 157.005 176.420 148.285 1.00 34.82 ATOM 38 CA GLY B 819 160.184 178.416 148.947 1.00 34.94 ATOM 39 CA THR B 820 160.309 177.297 152.570 1.00 35.29 ATOM 40 CA ILE B 821 162.186 174.265 153.889 1.00 36.11 ATOM 41 CA ARG B 822 159.480 171.887 155.119 1.00 36.60 ATOM 42 CA PHE B 823 160.463 169.522 157.936 1.00 39.95 ATOM 43 CA ASP B 824 158.020 166.656 157.892 1.00 50.35 ATOM 44 CA ALA B 825 157.579 164.907 161.220 1.00 55.10 ATOM 45 CA THR B 826 155.176 162.600 163.102 1.00 60.40 ATOM 46 CA ASP B 827 154.009 163.737 166.555 1.00 56.99 ATOM 47 CA ALA B 828 152.835 161.883 169.660 1.00 54.48 ATOM 48 CA PRO B 829 150.482 162.780 172.609 1.00 49.24 ATOM 49 CA ILE B 830 150.731 163.132 176.535 1.00 45.06 ATOM 50 CA THR B 831 149.384 165.518 179.268 1.00 45.29 ATOM 51 CA HIS B 832 151.193 164.874 182.573 1.00 42.31 ATOM 52 CA PHE B 833 154.934 164.308 182.707 1.00 42.11 ATOM 53 CA ARG B 834 158.035 164.483 184.829 1.00 49.44 ATOM 54 CA PRO B 835 161.015 166.813 184.382 1.00 52.89 ATOM 55 CA ARG B 836 163.336 163.880 184.982 1.00 57.86 ATOM 56 CA GLU B 837 161.645 162.270 181.988 1.00 59.99 ATOM 57 CA ILE B 838 162.480 165.314 179.837 1.00 55.62 ATOM 58 CA GLY B 839 165.939 166.384 181.073 1.00 59.96 ATOM 59 CA VAL B 840 165.351 170.160 181.086 1.00 59.50 ATOM 60 CA SER B 841 166.221 172.268 184.124 1.00 55.07 ATOM 61 CA VAL B 842 163.352 173.139 186.459 1.00 54.79 ATOM 62 CA GLU B 843 164.068 176.854 186.438 1.00 54.26 ATOM 63 CA LYS B 844 164.060 176.900 182.622 1.00 50.37 ATOM 64 CA LEU B 845 160.564 175.500 182.826 1.00 46.19 ATOM 65 CA ARG B 846 159.654 177.958 185.587 1.00 50.20 ATOM 66 CA GLU B 847 160.502 180.764 183.144 1.00 52.39 ATOM 67 CA LEU B 848 157.461 179.535 181.222 1.00 46.39 ATOM 68 CA GLY B 849 155.319 180.407 184.233 1.00 48.04 ATOM 69 CA TYR B 850 155.545 176.832 185.474 1.00 52.31 ATOM 70 CA THR B 851 154.977 177.364 189.188 1.00 62.76 ATOM 71 CA HIS B 852 153.382 174.237 190.536 1.00 62.11 ATOM 72 CA ASP B 853 152.757 170.547 190.023 1.00 55.92 ATOM 73 CA PHE B 854 149.597 168.858 188.825 1.00 55.43 ATOM 74 CA GLU B 855 148.217 169.431 192.351 1.00 60.84 ATOM 75 CA GLY B 856 148.902 173.151 192.611 1.00 61.44 ATOM 76 CA LYS B 857 151.810 172.499 194.958 1.00 62.04 ATOM 77 CA PRO B 858 154.772 174.678 193.877 1.00 60.06 ATOM 78 CA LEU B 859 157.164 172.828 191.600 1.00 59.34 ATOM 79 CA VAL B 860 160.402 172.133 193.404 1.00 61.25 ATOM 80 CA SER B 861 161.471 168.746 192.094 1.00 55.58 ATOM 81 CA GLU B 862 162.599 167.381 188.772 1.00 54.08 ATOM 82 CA ASP B 863 160.307 164.467 189.575 1.00 50.55 ATOM 83 CA GLN B 864 156.935 166.114 190.195 1.00 45.85 ATOM 84 CA ILE B 865 154.050 165.706 187.789 1.00 42.86 ATOM 85 CA VAL B 866 152.746 168.746 185.903 1.00 41.44 ATOM 86 CA GLU B 867 149.890 169.008 183.452 1.00 43.36 ATOM 87 CA LEU B 868 151.677 170.544 180.498 1.00 43.20 ATOM 88 CA LYS B 869 150.431 173.286 178.204 1.00 38.85 ATOM 89 CA PRO B 870 149.403 171.800 174.832 1.00 42.45 ATOM 90 CA GLN B 871 151.356 174.054 172.489 1.00 41.40 ATOM 91 CA ASP B 872 154.521 173.346 174.483 1.00 38.52 ATOM 92 CA ILE B 873 156.077 170.729 172.264 1.00 39.09 ATOM 93 CA ILE B 874 158.952 168.350 172.938 1.00 41.26 ATOM 94 CA LEU B 875 160.923 167.770 169.805 1.00 43.44 ATOM 95 CA SER B 876 163.842 165.695 168.684 1.00 45.08 ATOM 96 CA LYS B 877 167.366 167.026 169.158 1.00 48.60 ATOM 97 CA GLU B 878 168.208 166.359 165.516 1.00 47.54 ATOM 98 CA ALA B 879 165.226 168.446 164.412 1.00 39.93 ATOM 99 CA GLY B 880 166.532 171.334 166.473 1.00 39.39 ATOM 100 CA ARG B 881 169.967 170.582 165.054 1.00 42.39 ATOM 101 CA TYR B 882 169.008 170.904 161.406 1.00 37.60 ATOM 102 CA LEU B 883 166.360 173.537 161.957 1.00 36.02 ATOM 103 CA LEU B 884 168.984 175.242 164.106 1.00 37.84 ATOM 104 CA LYS B 885 171.062 175.410 160.952 1.00 35.44 ATOM 105 CA VAL B 886 167.910 176.630 159.200 1.00 33.91 ATOM 106 CA ALA B 887 167.414 179.428 161.736 1.00 33.78 ATOM 107 CA LYS B 888 171.087 180.373 161.564 1.00 36.09 ATOM 108 CA PHE B 889 170.599 180.414 157.800 1.00 33.27 ATOM 109 CA VAL B 890 167.617 182.724 158.444 1.00 31.16 ATOM 110 CA ASP B 891 169.661 185.130 160.575 1.00 33.80 ATOM 111 CA ASP B 892 172.462 185.016 157.991 1.00 35.13 ATOM 112 CA LEU B 893 169.883 185.843 155.344 1.00 31.81 ATOM 113 CA LEU B 894 168.655 188.869 157.289 1.00 30.93 ATOM 114 CA GLU B 895 172.138 190.192 157.912 1.00 35.51 ATOM 115 CA LYS B 896 173.982 189.141 154.755 1.00 37.38 ATOM 116 CA PHE B 897 171.312 189.801 152.131 1.00 33.19 ATOM 117 CA TYR B 898 168.965 192.336 153.666 1.00 35.81 ATOM 118 CA GLY B 899 171.163 193.856 156.300 1.00 38.36 ATOM 119 CA LEU B 900 168.273 193.205 158.664 1.00 38.38 ATOM 120 CA PRO B 901 169.177 192.479 162.292 1.00 40.88 ATOM 121 CA ARG B 902 169.188 188.868 163.399 1.00 37.20 ATOM 122 CA PHE B 903 165.918 187.568 164.847 1.00 36.55 ATOM 123 CA TYR B 904 166.179 184.191 166.558 1.00 33.83 ATOM 124 CA ASN B 905 169.853 184.734 167.520 1.00 37.98 ATOM 125 CA ALA B 906 169.814 180.989 167.851 1.00 38.15 ATOM 126 CA GLU B 907 172.909 179.013 168.631 1.00 43.97 ATOM 127 CA LYS B 908 171.494 176.159 170.703 1.00 44.05 ATOM 128 CA MET B 909 168.440 174.017 170.723 1.00 42.56 ATOM 129 CA GLU B 910 168.074 175.633 174.125 1.00 47.75 ATOM 130 CA ASP B 911 168.168 178.890 172.158 1.00 44.05 ATOM 131 CA LEU B 912 164.991 177.677 170.465 1.00 41.26 ATOM 132 CA ILE B 913 162.918 177.310 173.604 1.00 41.73 ATOM 133 CA GLY B 914 159.887 179.547 173.585 1.00 37.32 ATOM 134 CA HIS B 915 160.364 180.495 169.933 1.00 35.43 ATOM 135 CA LEU B 916 157.027 180.069 168.249 1.00 34.58 ATOM 136 CA VAL B 917 156.745 177.942 165.109 1.00 33.51 ATOM 137 CA ILE B 918 154.022 176.587 162.832 1.00 36.95 ATOM 138 CA GLY B 919 152.878 173.054 162.982 1.00 36.06 ATOM 139 CA LEU B 920 151.443 172.599 159.491 1.00 37.75 ATOM 140 CA ALA B 921 149.255 169.517 159.118 1.00 40.81 ATOM 141 CA PRO B 922 149.045 167.445 155.930 1.00 43.88 ATOM 142 CA HIS B 923 145.895 167.743 153.772 1.00 45.08 ATOM 143 CA THR B 924 145.366 171.220 155.271 1.00 38.95 ATOM 144 CA SER B 925 145.929 174.860 154.454 1.00 36.63 ATOM 145 CA ALA B 926 145.364 175.672 158.137 1.00 34.88 ATOM 146 CA GLY B 927 148.502 176.089 160.224 1.00 34.11 ATOM 147 CA ILE B 928 148.945 175.582 163.943 1.00 37.46 ATOM 148 CA VAL B 929 151.237 177.617 166.162 1.00 38.30 ATOM 149 CA GLY B 930 153.287 175.956 168.895 1.00 34.82 ATOM 150 CA ARG B 931 155.870 176.881 171.530 1.00 35.47 ATOM 151 CA ILE B 932 159.205 175.055 171.545 1.00 39.42 ATOM 152 CA ILE B 933 160.046 173.620 174.962 1.00 41.23 ATOM 153 CA GLY B 934 161.651 170.185 174.641 1.00 42.45 ATOM 154 CA PHE B 935 163.869 167.823 172.708 1.00 48.31 ATOM 155 CA VAL B 936 164.628 164.123 172.464 1.00 52.65 ATOM 156 CA ASP B 937 167.627 162.218 171.226 1.00 66.89 ATOM 157 CA ALA B 938 165.295 159.475 170.057 1.00 67.43 ATOM 158 CA LEU B 939 162.677 159.181 167.347 1.00 64.99 ATOM 159 CA VAL B 940 159.553 160.567 168.852 1.00 57.76 ATOM 160 CA GLY B 941 158.217 164.096 168.608 1.00 56.73 ATOM 161 CA TYR B 942 155.487 165.117 171.008 1.00 51.98 ATOM 162 CA ALA B 943 152.197 166.985 170.702 1.00 46.69 ATOM 163 CA HIS B 944 148.936 167.055 172.634 1.00 44.32 ATOM 164 CA PRO B 945 145.567 166.084 171.102 1.00 48.20 ATOM 165 CA TYR B 946 144.417 169.612 171.933 1.00 58.47 ATOM 166 CA PHE B 947 147.436 170.658 169.907 1.00 51.12 ATOM 167 CA HIS B 948 146.854 168.172 167.083 1.00 63.91 ATOM 168 CA ALA B 949 143.113 167.853 166.925 1.00 70.87 ATOM 169 CA ALA B 950 140.898 164.782 167.209 1.00 77.16 ATOM 170 CA LYS B 951 139.815 165.415 163.631 1.00 83.13 ATOM 171 CA ARG B 952 143.302 166.492 162.546 1.00 84.72 ATOM 172 CA ARG B 953 145.084 163.312 163.664 1.00 89.14 ATOM 173 CA ASN B 954 142.299 161.007 162.573 1.00 99.67 ATOM 174 CA CYS B 955 142.776 160.959 158.774 1.00106.19 ATOM 175 CA ASP B 956 145.894 158.704 159.062 1.00107.77 ATOM 176 CA GLY B 957 147.740 161.995 158.996 1.00 97.24 ATOM 177 CA ASP B 958 150.024 161.873 161.956 1.00 87.32 ATOM 178 CA GLU B 959 152.773 163.996 160.471 1.00 73.69 ATOM 179 CA ASP B 960 153.439 167.715 160.197 1.00 59.53 ATOM 180 CA ALA B 961 155.258 170.331 158.163 1.00 47.48 ATOM 181 CA VAL B 962 157.024 171.633 161.212 1.00 43.07 ATOM 182 CA MET B 963 158.102 175.073 160.001 1.00 40.11 ATOM 183 CA LEU B 964 159.778 178.164 161.444 1.00 33.52 ATOM 184 CA LEU B 965 157.612 181.269 161.556 1.00 32.04 ATOM 185 CA LEU B 966 159.996 183.720 159.906 1.00 31.32 ATOM 186 CA ASP B 967 161.011 181.165 157.270 1.00 31.99 ATOM 187 CA ALA B 968 157.391 180.487 156.346 1.00 34.70 ATOM 188 CA LEU B 969 156.263 184.111 156.299 1.00 29.26 ATOM 189 CA LEU B 970 159.337 185.328 154.429 1.00 30.51 ATOM 190 CA ASN B 971 159.791 182.320 152.204 1.00 30.90 ATOM 191 CA PHE B 972 156.359 181.678 150.733 1.00 33.50 ATOM 192 CA SER B 973 155.205 183.084 147.410 1.00 31.93 ATOM 193 CA ARG B 974 151.801 182.515 145.858 1.00 31.15 ATOM 194 CA TYR B 975 153.618 182.196 142.528 1.00 35.59 ATOM 195 CA TYR B 976 154.920 178.870 143.858 1.00 31.40 ATOM 196 CA LEU B 977 151.462 177.296 143.919 1.00 37.19 ATOM 197 CA PRO B 978 150.848 174.103 141.909 1.00 42.94 ATOM 198 CA GLU B 979 148.486 175.630 139.448 1.00 43.12 ATOM 199 CA LYS B 980 145.968 172.868 138.752 1.00 42.47 ATOM 200 CA ARG B 981 146.601 170.010 141.157 1.00 47.98 ATOM 201 CA GLY B 982 146.544 171.018 144.783 1.00 50.03 ATOM 202 CA GLY B 983 147.535 168.075 146.878 1.00 54.60 ATOM 203 CA LYS B 984 147.892 166.961 150.462 1.00 53.21 ATOM 204 CA MET B 985 150.617 169.436 151.394 1.00 50.81 ATOM 205 CA ASP B 986 148.719 172.616 150.659 1.00 42.11 ATOM 206 CA ALA B 987 150.426 175.875 151.465 1.00 39.46 ATOM 207 CA PRO B 988 149.655 177.288 154.922 1.00 35.87 ATOM 208 CA LEU B 989 147.302 179.830 153.407 1.00 37.44 ATOM 209 CA VAL B 990 145.911 181.010 156.751 1.00 37.26 ATOM 210 CA ILE B 991 146.807 179.665 160.199 1.00 35.94 ATOM 211 CA THR B 992 144.879 178.817 163.360 1.00 36.47 ATOM 212 CA THR B 993 146.292 180.391 166.509 1.00 37.37 ATOM 213 CA ARG B 994 143.721 179.725 169.255 1.00 43.80 ATOM 214 CA LEU B 995 142.456 176.397 170.573 1.00 54.22 ATOM 215 CA ASP B 996 139.402 175.480 172.686 1.00 68.85 ATOM 216 CA PRO B 997 138.061 172.177 174.130 1.00 81.45 TER