HEADER REPLICATION 31-DEC-69 6HMS TITLE Cryo-EM map of DNA polymerase D from Pyrococcus abyssi in complex TITLE 2 with DNA COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA polymerase II large subunit,DNA polymerase II large COMPND 3 subunit; COMPND 4 CHAIN: B; COMPND 5 EC: 2.7.7.7,3.1.11.1,2.7.7.7,3.1.11.1; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 339 REMARK 465 LEU B 340 REMARK 465 PHE B 341 REMARK 465 SER B 342 REMARK 465 ASP B 343 REMARK 465 PRO B 344 DBREF 6HMS B 1 955 UNP Q9V2F4 DP2L_PYRAB 1 955 DBREF 6HMS B 956 1270 UNP Q9V2F4 DP2L_PYRAB 1141 1455 SEQRES 1 B 137 ASP MET GLY PHE TYR TYR SER LEU TYR GLN LYS PHE LYS SEQRES 2 B 137 GLU GLU ILE ALA PRO SER ASP LYS TYR ALA LYS GLU VAL SEQRES 3 B 137 ILE GLY GLY ARG PRO LEU PHE SER ASP PRO SER LYS PRO SEQRES 4 B 137 GLY GLY PHE ARG LEU ARG TYR GLY ARG SER ARG ALA SER SEQRES 5 B 137 GLY PHE ALA THR TRP GLY ILE ASN PRO ALA THR MET ILE SEQRES 6 B 137 LEU VAL ASP GLU PHE LEU ALA ILE GLY THR GLN LEU LYS SEQRES 7 B 137 THR GLU ARG PRO GLY LYS GLY ALA VAL VAL THR PRO VAL SEQRES 8 B 137 THR THR ILE GLU GLY PRO ILE VAL LYS LEU LYS ASP GLY SEQRES 9 B 137 SER VAL LEU ARG VAL ASP ASP TYR ASN LEU ALA LEU LYS SEQRES 10 B 137 VAL ARG GLU ASP VAL GLU GLU ILE LEU TYR LEU GLY ASP SEQRES 11 B 137 ALA VAL ILE ALA PHE GLY ASP ATOM 1 CA ASP B 309 127.615 121.042 186.053 1.00 77.64 ATOM 2 CA MET B 310 130.083 122.915 183.873 1.00 62.65 ATOM 3 CA GLY B 311 133.233 124.563 185.138 1.00 49.27 ATOM 4 CA PHE B 312 133.237 128.333 185.338 1.00 43.76 ATOM 5 CA TYR B 313 136.637 128.334 183.726 1.00 38.33 ATOM 6 CA TYR B 314 135.404 125.556 181.452 1.00 41.47 ATOM 7 CA SER B 315 132.364 127.601 180.434 1.00 47.17 ATOM 8 CA LEU B 316 134.732 130.539 180.248 1.00 50.43 ATOM 9 CA TYR B 317 136.661 128.621 177.590 1.00 53.67 ATOM 10 CA GLN B 318 133.315 127.944 175.948 1.00 62.83 ATOM 11 CA LYS B 319 132.166 131.577 175.895 1.00 71.46 ATOM 12 CA PHE B 320 135.744 132.552 175.126 1.00 83.68 ATOM 13 CA LYS B 321 135.565 130.660 171.868 1.00 87.95 ATOM 14 CA GLU B 322 131.937 131.674 171.297 1.00 92.60 ATOM 15 CA GLU B 323 132.073 135.427 171.071 1.00112.00 ATOM 16 CA ILE B 324 135.703 135.655 169.977 1.00 30.00 ATOM 17 CA ALA B 325 137.500 134.528 166.862 1.00 30.00 ATOM 18 CA PRO B 326 140.989 135.725 165.953 1.00 30.00 ATOM 19 CA SER B 327 140.859 138.852 163.845 1.00 30.00 ATOM 20 CA ASP B 328 142.587 137.233 160.866 1.00 30.00 ATOM 21 CA LYS B 329 141.687 139.872 158.216 1.00 30.00 ATOM 22 CA TYR B 330 144.839 141.914 158.827 1.00 30.00 ATOM 23 CA ALA B 331 146.664 138.644 159.459 1.00 30.00 ATOM 24 CA LYS B 332 145.704 137.605 155.940 1.00 30.00 ATOM 25 CA GLU B 333 146.838 141.032 154.761 1.00 30.00 ATOM 26 CA VAL B 334 150.223 140.333 156.311 1.00 30.00 ATOM 27 CA ILE B 335 150.072 136.943 154.534 1.00 30.00 ATOM 28 CA GLY B 336 149.972 139.273 151.562 1.00 30.00 ATOM 29 CA GLY B 337 152.874 141.497 152.601 1.00 30.00 ATOM 30 CA ARG B 338 155.537 141.915 155.332 1.00 30.00 ATOM 31 CA SER B 345 158.479 140.470 160.720 1.00 75.81 ATOM 32 CA LYS B 346 156.168 137.783 162.102 1.00 76.05 ATOM 33 CA PRO B 347 155.205 137.791 165.790 1.00 78.73 ATOM 34 CA GLY B 348 153.078 135.258 167.596 1.00 73.11 ATOM 35 CA GLY B 349 150.451 136.070 170.182 1.00 62.27 ATOM 36 CA PHE B 350 150.449 138.182 173.332 1.00 30.00 ATOM 37 CA ARG B 351 148.699 139.013 176.559 1.00 30.00 ATOM 38 CA LEU B 352 147.346 142.522 176.910 1.00 30.00 ATOM 39 CA ARG B 353 146.439 145.055 179.552 1.00 30.00 ATOM 40 CA TYR B 354 143.586 147.559 179.596 1.00 30.00 ATOM 41 CA GLY B 355 143.455 150.631 181.744 1.00 30.00 ATOM 42 CA ARG B 356 144.211 154.137 180.511 1.00 30.00 ATOM 43 CA SER B 357 145.940 155.398 183.638 1.00 30.00 ATOM 44 CA ARG B 358 149.168 157.356 183.564 1.00 30.00 ATOM 45 CA ALA B 359 147.882 160.322 181.477 1.00 30.00 ATOM 46 CA SER B 360 149.505 158.378 178.660 1.00 30.00 ATOM 47 CA GLY B 361 147.430 156.583 176.070 1.00 30.00 ATOM 48 CA PHE B 362 143.824 157.490 175.547 1.00 30.00 ATOM 49 CA ALA B 363 144.736 155.763 172.314 1.00 30.00 ATOM 50 CA THR B 364 147.483 154.062 170.371 1.00 30.00 ATOM 51 CA TRP B 365 149.615 152.113 172.768 1.00 64.21 ATOM 52 CA GLY B 366 151.487 150.688 175.731 1.00 52.56 ATOM 53 CA ILE B 367 154.698 148.674 175.087 1.00 45.29 ATOM 54 CA ASN B 368 157.258 147.599 177.664 1.00 41.83 ATOM 55 CA PRO B 369 160.874 148.520 176.869 1.00 46.44 ATOM 56 CA ALA B 370 161.574 145.106 178.376 1.00 44.69 ATOM 57 CA THR B 371 159.835 143.571 175.390 1.00 42.56 ATOM 58 CA MET B 372 161.492 146.074 173.148 1.00 46.86 ATOM 59 CA ILE B 373 164.872 144.644 174.091 1.00 49.68 ATOM 60 CA LEU B 374 164.272 140.979 173.435 1.00 49.52 ATOM 61 CA VAL B 375 161.893 141.598 170.540 1.00 71.99 ATOM 62 CA ASP B 376 162.204 144.969 168.791 1.00 30.00 ATOM 63 CA GLU B 377 165.252 143.675 166.984 1.00 30.00 ATOM 64 CA PHE B 378 165.432 144.549 163.305 1.00 30.00 ATOM 65 CA LEU B 379 167.425 146.239 160.531 1.00 30.00 ATOM 66 CA ALA B 380 168.415 149.822 160.033 1.00 30.00 ATOM 67 CA ILE B 381 164.732 150.029 159.062 1.00 30.00 ATOM 68 CA GLY B 382 163.904 150.633 162.731 1.00 30.00 ATOM 69 CA THR B 383 162.476 148.611 165.604 1.00 30.00 ATOM 70 CA GLN B 384 160.000 150.904 167.383 1.00 30.00 ATOM 71 CA LEU B 385 157.404 150.767 164.650 1.00 30.00 ATOM 72 CA LYS B 386 153.674 151.273 163.908 1.00 30.00 ATOM 73 CA THR B 387 151.664 148.029 163.713 1.00 30.00 ATOM 74 CA GLU B 388 148.344 146.396 164.697 1.00 30.00 ATOM 75 CA ARG B 389 146.582 143.741 166.880 1.00 30.00 ATOM 76 CA PRO B 390 143.780 142.726 166.665 1.00 30.00 ATOM 77 CA GLY B 391 142.776 145.629 164.488 1.00 30.00 ATOM 78 CA LYS B 392 143.856 149.222 165.124 1.00 30.00 ATOM 79 CA GLY B 393 146.697 151.212 163.632 1.00 80.98 ATOM 80 CA ALA B 394 149.120 152.472 166.205 1.00 76.23 ATOM 81 CA VAL B 395 152.646 153.253 167.297 1.00 64.43 ATOM 82 CA VAL B 396 155.079 151.743 169.856 1.00 54.52 ATOM 83 CA THR B 397 154.610 153.584 173.160 1.00 51.19 ATOM 84 CA PRO B 398 156.952 152.809 176.093 1.00 50.28 ATOM 85 CA VAL B 399 155.951 151.760 179.622 1.00 48.53 ATOM 86 CA THR B 400 158.066 152.732 182.606 1.00 49.27 ATOM 87 CA THR B 401 156.051 150.589 185.005 1.00 47.11 ATOM 88 CA ILE B 402 154.685 147.162 184.022 1.00 41.09 ATOM 89 CA GLU B 403 155.870 143.553 183.602 1.00 41.60 ATOM 90 CA GLY B 404 156.363 141.580 180.400 1.00 39.30 ATOM 91 CA PRO B 405 157.317 138.242 178.898 1.00 38.83 ATOM 92 CA ILE B 406 158.526 135.005 180.399 1.00 38.20 ATOM 93 CA VAL B 407 161.270 133.065 178.675 1.00 37.83 ATOM 94 CA LYS B 408 162.864 129.671 178.755 1.00 40.28 ATOM 95 CA LEU B 409 166.593 129.705 179.217 1.00 42.27 ATOM 96 CA LYS B 410 168.881 127.625 177.049 1.00 45.37 ATOM 97 CA ASP B 411 169.795 125.190 179.835 1.00 47.08 ATOM 98 CA GLY B 412 166.151 124.368 180.453 1.00 42.12 ATOM 99 CA SER B 413 165.662 126.925 183.193 1.00 40.83 ATOM 100 CA VAL B 414 162.729 129.307 182.961 1.00 38.30 ATOM 101 CA LEU B 415 162.846 132.988 183.792 1.00 44.88 ATOM 102 CA ARG B 416 160.269 135.721 183.923 1.00 39.16 ATOM 103 CA VAL B 417 162.057 138.561 182.156 1.00 39.84 ATOM 104 CA ASP B 418 160.374 141.892 182.792 1.00 41.73 ATOM 105 CA ASP B 419 163.069 144.577 183.004 1.00 45.83 ATOM 106 CA TYR B 420 165.357 146.695 180.941 1.00 49.97 ATOM 107 CA ASN B 421 168.753 145.678 182.185 1.00 47.67 ATOM 108 CA LEU B 422 168.616 141.929 182.723 1.00 42.91 ATOM 109 CA ALA B 423 166.909 141.592 179.343 1.00 45.09 ATOM 110 CA LEU B 424 169.935 143.430 178.011 1.00 51.56 ATOM 111 CA LYS B 425 172.125 141.005 179.948 1.00 49.70 ATOM 112 CA VAL B 426 170.593 137.720 178.790 1.00 46.21 ATOM 113 CA ARG B 427 169.272 138.793 175.366 1.00 49.83 ATOM 114 CA GLU B 428 172.177 136.787 173.909 1.00 54.42 ATOM 115 CA ASP B 429 170.991 133.491 175.395 1.00 52.31 ATOM 116 CA VAL B 430 167.236 133.602 174.871 1.00 44.46 ATOM 117 CA GLU B 431 165.820 130.142 174.204 1.00 47.72 ATOM 118 CA GLU B 432 162.052 130.673 173.964 1.00 44.09 ATOM 119 CA ILE B 433 159.747 133.365 175.253 1.00 41.99 ATOM 120 CA LEU B 434 157.198 131.139 176.887 1.00 40.55 ATOM 121 CA TYR B 435 154.575 133.671 177.865 1.00 38.91 ATOM 122 CA LEU B 436 154.331 136.389 175.393 1.00 41.76 ATOM 123 CA GLY B 437 154.765 139.858 176.874 1.00 39.00 ATOM 124 CA ASP B 438 152.421 142.052 178.872 1.00 39.38 ATOM 125 CA ALA B 439 151.382 144.937 176.644 1.00 40.48 ATOM 126 CA VAL B 440 149.126 147.792 177.666 1.00 43.38 ATOM 127 CA ILE B 441 146.165 148.487 175.468 1.00 52.70 ATOM 128 CA ALA B 442 144.581 151.885 175.840 1.00 57.41 ATOM 129 CA PHE B 443 141.205 150.863 177.204 1.00 62.65 ATOM 130 CA GLY B 444 139.397 153.592 175.280 1.00 68.48 ATOM 131 CA ASP B 445 140.592 152.333 171.898 1.00 99.93 TER