HEADER REPLICATION 31-DEC-69 6HMS TITLE Cryo-EM map of DNA polymerase D from Pyrococcus abyssi in complex TITLE 2 with DNA COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA polymerase II large subunit,DNA polymerase II large COMPND 3 subunit; COMPND 4 CHAIN: B; COMPND 5 EC: 2.7.7.7,3.1.11.1,2.7.7.7,3.1.11.1; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 6HMS B 1 955 UNP Q9V2F4 DP2L_PYRAB 1 955 DBREF 6HMS B 956 1270 UNP Q9V2F4 DP2L_PYRAB 1141 1455 SEQRES 1 B 116 LEU TYR TRP ASN SER VAL GLU PRO LYS ASP VAL GLU LYS SEQRES 2 B 116 LEU TRP ARG LEU LEU LYS ASN TYR ALA GLU ILE GLU TRP SEQRES 3 B 116 SER ASN PHE ARG GLY ILE LYS PHE ALA LYS LYS ILE VAL SEQRES 4 B 116 ILE SER GLN GLU LYS LEU GLY ASP SER LYS ARG THR LEU SEQRES 5 B 116 GLU LEU LEU GLY LEU PRO HIS THR VAL ARG ASP GLY ASN SEQRES 6 B 116 VAL ILE VAL ASP TYR PRO TRP ALA ALA ALA LEU LEU THR SEQRES 7 B 116 PRO LEU GLY ASN LEU ASN TRP GLU PHE MET ALA LYS PRO SEQRES 8 B 116 LEU TYR ALA THR ILE ASP ILE ILE ASN GLU ASN ASN GLU SEQRES 9 B 116 ILE LYS LEU ARG ASP ARG GLY ILE SER TRP ILE GLY ATOM 1 CA LEU B 538 150.999 130.544 187.219 1.00 32.43 ATOM 2 CA TYR B 539 148.950 129.265 184.300 1.00 32.91 ATOM 3 CA TRP B 540 147.173 126.472 186.028 1.00 33.38 ATOM 4 CA ASN B 541 144.346 126.938 183.542 1.00 36.87 ATOM 5 CA SER B 542 146.917 126.390 180.792 1.00 39.47 ATOM 6 CA VAL B 543 147.302 122.870 182.253 1.00 42.95 ATOM 7 CA GLU B 544 145.084 119.812 182.175 1.00 42.64 ATOM 8 CA PRO B 545 143.715 118.495 185.439 1.00 39.36 ATOM 9 CA LYS B 546 145.407 115.264 184.348 1.00 43.46 ATOM 10 CA ASP B 547 148.961 116.496 184.676 1.00 40.69 ATOM 11 CA VAL B 548 148.309 118.280 187.947 1.00 35.48 ATOM 12 CA GLU B 549 147.059 114.964 189.260 1.00 38.86 ATOM 13 CA LYS B 550 150.192 113.444 187.705 1.00 40.47 ATOM 14 CA LEU B 551 152.672 115.895 189.126 1.00 40.92 ATOM 15 CA TRP B 552 150.697 115.886 192.376 1.00 41.04 ATOM 16 CA ARG B 553 151.733 112.252 192.520 1.00 42.91 ATOM 17 CA LEU B 554 155.303 112.963 191.400 1.00 38.98 ATOM 18 CA LEU B 555 155.771 115.552 194.114 1.00 42.86 ATOM 19 CA LYS B 556 153.801 113.500 196.590 1.00 41.58 ATOM 20 CA ASN B 557 156.286 110.684 196.076 1.00 42.53 ATOM 21 CA TYR B 558 159.542 112.436 195.282 1.00 43.25 ATOM 22 CA ALA B 559 159.763 115.999 196.613 1.00 43.54 ATOM 23 CA GLU B 560 162.394 116.771 199.274 1.00 43.54 ATOM 24 CA ILE B 561 160.855 119.891 200.756 1.00 38.33 ATOM 25 CA GLU B 562 162.171 122.492 203.136 1.00 40.71 ATOM 26 CA TRP B 563 159.587 123.944 205.472 1.00 39.45 ATOM 27 CA SER B 564 158.973 126.856 207.807 1.00 39.27 ATOM 28 CA ASN B 565 156.044 128.699 209.333 1.00 43.09 ATOM 29 CA PHE B 566 154.986 132.301 209.871 1.00 42.15 ATOM 30 CA ARG B 567 151.641 133.647 211.202 1.00 42.81 ATOM 31 CA GLY B 568 150.192 130.140 211.061 1.00 42.22 ATOM 32 CA ILE B 569 151.234 129.887 207.412 1.00 42.64 ATOM 33 CA LYS B 570 153.368 126.755 207.400 1.00 40.17 ATOM 34 CA PHE B 571 155.155 127.277 204.136 1.00 36.84 ATOM 35 CA ALA B 572 157.681 125.514 201.975 1.00 37.03 ATOM 36 CA LYS B 573 161.097 126.938 201.502 1.00 40.44 ATOM 37 CA LYS B 574 163.071 124.893 198.975 1.00 38.19 ATOM 38 CA ILE B 575 162.142 121.871 196.888 1.00 35.92 ATOM 39 CA VAL B 576 164.437 119.234 195.353 1.00 38.79 ATOM 40 CA ILE B 577 163.332 116.392 193.086 1.00 40.61 ATOM 41 CA SER B 578 165.166 114.225 190.593 1.00 47.80 ATOM 42 CA GLN B 579 164.645 115.417 187.024 1.00 49.06 ATOM 43 CA GLU B 580 163.467 111.919 186.103 1.00 53.80 ATOM 44 CA LYS B 581 160.769 112.101 188.759 1.00 51.66 ATOM 45 CA LEU B 582 159.653 115.334 187.182 1.00 46.32 ATOM 46 CA GLY B 583 159.888 113.760 183.740 1.00 46.71 ATOM 47 CA ASP B 584 157.230 114.908 181.302 1.00 47.82 ATOM 48 CA SER B 585 155.754 117.139 183.975 1.00 42.57 ATOM 49 CA LYS B 586 158.523 119.524 182.989 1.00 39.40 ATOM 50 CA ARG B 587 156.060 120.320 180.222 1.00 40.64 ATOM 51 CA THR B 588 153.378 120.633 182.899 1.00 37.41 ATOM 52 CA LEU B 589 155.625 123.277 184.449 1.00 39.49 ATOM 53 CA GLU B 590 155.926 124.739 180.977 1.00 36.96 ATOM 54 CA LEU B 591 152.162 125.067 181.037 1.00 38.59 ATOM 55 CA LEU B 592 152.374 126.797 184.410 1.00 36.91 ATOM 56 CA GLY B 593 155.189 129.308 183.967 1.00 33.01 ATOM 57 CA LEU B 594 157.557 128.900 186.995 1.00 33.05 ATOM 58 CA PRO B 595 160.872 130.631 187.690 1.00 34.35 ATOM 59 CA HIS B 596 162.945 127.701 188.915 1.00 35.50 ATOM 60 CA THR B 597 166.389 126.099 188.731 1.00 41.26 ATOM 61 CA VAL B 598 167.654 122.973 186.955 1.00 46.99 ATOM 62 CA ARG B 599 170.781 121.435 188.487 1.00 51.38 ATOM 63 CA ASP B 600 172.631 118.145 187.854 1.00 54.45 ATOM 64 CA GLY B 601 169.853 115.597 187.640 1.00 52.16 ATOM 65 CA ASN B 602 167.787 117.618 190.079 1.00 47.17 ATOM 66 CA VAL B 603 165.192 120.370 189.928 1.00 42.38 ATOM 67 CA ILE B 604 165.460 122.946 192.674 1.00 38.45 ATOM 68 CA VAL B 605 162.692 125.475 193.305 1.00 33.10 ATOM 69 CA ASP B 606 163.490 128.123 195.885 1.00 34.64 ATOM 70 CA TYR B 607 161.727 130.782 197.845 1.00 35.52 ATOM 71 CA PRO B 608 159.529 132.535 196.786 1.00 35.70 ATOM 72 CA TRP B 609 158.423 130.037 194.220 1.00 35.01 ATOM 73 CA ALA B 610 158.662 127.010 196.509 1.00 34.22 ATOM 74 CA ALA B 611 156.151 128.418 198.996 1.00 31.66 ATOM 75 CA ALA B 612 154.109 129.923 196.154 1.00 32.41 ATOM 76 CA LEU B 613 154.560 126.600 194.383 1.00 31.42 ATOM 77 CA LEU B 614 153.021 124.322 196.990 1.00 35.78 ATOM 78 CA THR B 615 150.232 126.777 197.871 1.00 35.34 ATOM 79 CA PRO B 616 147.168 125.865 195.741 1.00 34.13 ATOM 80 CA LEU B 617 147.218 122.161 196.651 1.00 34.80 ATOM 81 CA GLY B 618 147.131 122.969 200.325 1.00 38.74 ATOM 82 CA ASN B 619 150.728 121.634 200.285 1.00 37.01 ATOM 83 CA LEU B 620 149.860 118.518 198.213 1.00 40.44 ATOM 84 CA ASN B 621 147.488 117.417 200.962 1.00 44.86 ATOM 85 CA TRP B 622 144.225 116.959 199.177 1.00 39.85 ATOM 86 CA GLU B 623 144.892 115.043 196.013 1.00 41.62 ATOM 87 CA PHE B 624 144.485 116.825 192.744 1.00 40.90 ATOM 88 CA MET B 625 142.536 114.715 190.245 1.00 47.60 ATOM 89 CA ALA B 626 141.612 114.768 186.585 1.00 45.65 ATOM 90 CA LYS B 627 137.958 115.616 186.249 1.00 52.67 ATOM 91 CA PRO B 628 135.585 116.055 183.295 1.00 54.14 ATOM 92 CA LEU B 629 133.473 119.167 182.538 1.00 50.90 ATOM 93 CA TYR B 630 135.807 121.226 184.703 1.00 47.28 ATOM 94 CA ALA B 631 139.121 123.024 184.748 1.00 38.07 ATOM 95 CA THR B 632 142.056 122.738 187.128 1.00 37.37 ATOM 96 CA ILE B 633 141.314 125.809 189.241 1.00 37.32 ATOM 97 CA ASP B 634 137.688 124.677 189.443 1.00 35.94 ATOM 98 CA ILE B 635 139.019 121.567 191.214 1.00 36.47 ATOM 99 CA ILE B 636 141.222 123.722 193.429 1.00 34.84 ATOM 100 CA ASN B 637 138.295 125.976 194.392 1.00 38.75 ATOM 101 CA GLU B 638 136.484 122.744 195.116 1.00 44.22 ATOM 102 CA ASN B 639 139.207 121.219 197.202 1.00 43.40 ATOM 103 CA ASN B 640 141.556 123.884 198.477 1.00 42.83 ATOM 104 CA GLU B 641 140.635 126.806 200.654 1.00 44.19 ATOM 105 CA ILE B 642 143.314 128.448 198.522 1.00 41.38 ATOM 106 CA LYS B 643 140.847 130.029 196.092 1.00 36.62 ATOM 107 CA LEU B 644 142.724 132.198 193.583 1.00 37.75 ATOM 108 CA ARG B 645 142.314 133.329 189.949 1.00 36.68 ATOM 109 CA ASP B 646 144.327 132.722 186.781 1.00 34.59 ATOM 110 CA ARG B 647 146.441 135.616 185.567 1.00 35.15 ATOM 111 CA GLY B 648 145.608 135.264 181.871 1.00 36.85 ATOM 112 CA ILE B 649 143.138 134.332 179.142 1.00 39.51 ATOM 113 CA SER B 650 144.196 136.820 176.514 1.00 44.79 ATOM 114 CA TRP B 651 146.230 134.884 173.978 1.00 30.00 ATOM 115 CA ILE B 652 145.650 135.421 170.208 1.00 30.00 ATOM 116 CA GLY B 653 148.227 135.501 167.404 1.00 30.00 TER