HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNL TITLE REF6 ZnF2-4-NAC004 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.15 ANGSTORMS DBREF 6JNL A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 28 ARG ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN PHE SEQRES 2 A 28 PHE SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL HIS SEQRES 3 A 28 SER ASP ATOM 1 N ARG A1265 16.464 -35.164 0.588 1.00104.37 ATOM 2 CA ARG A1265 16.785 -34.564 -0.760 1.00106.60 ATOM 3 C ARG A1265 15.839 -33.389 -0.982 1.00104.66 ATOM 4 O ARG A1265 14.630 -33.589 -1.052 1.00 99.25 ATOM 5 CB ARG A1265 16.597 -35.549 -1.953 1.00110.53 ATOM 6 CG ARG A1265 17.196 -36.944 -1.876 1.00115.73 ATOM 7 CD ARG A1265 18.691 -36.957 -2.091 1.00124.51 ATOM 8 NE ARG A1265 19.377 -36.709 -0.825 1.00130.87 ATOM 9 CZ ARG A1265 20.646 -37.010 -0.560 1.00132.58 ATOM 10 NH1 ARG A1265 21.428 -37.581 -1.470 1.00139.62 ATOM 11 NH2 ARG A1265 21.146 -36.733 0.639 1.00130.71 ATOM 12 N ASN A1266 16.375 -32.173 -1.095 1.00 96.35 ATOM 13 CA ASN A1266 15.563 -30.993 -1.440 1.00 93.44 ATOM 14 C ASN A1266 16.036 -30.448 -2.774 1.00 94.18 ATOM 15 O ASN A1266 17.086 -29.819 -2.864 1.00100.33 ATOM 16 CB ASN A1266 15.685 -29.911 -0.393 1.00 88.83 ATOM 17 CG ASN A1266 15.377 -30.400 0.991 1.00 86.90 ATOM 18 OD1 ASN A1266 14.276 -30.240 1.471 1.00 95.47 ATOM 19 ND2 ASN A1266 16.353 -30.978 1.640 1.00 90.85 ATOM 20 N ILE A1267 15.258 -30.688 -3.811 1.00 92.47 ATOM 21 CA ILE A1267 15.708 -30.478 -5.176 1.00 97.37 ATOM 22 C ILE A1267 15.062 -29.212 -5.697 1.00 97.52 ATOM 23 O ILE A1267 13.888 -28.973 -5.442 1.00 89.37 ATOM 24 CB ILE A1267 15.315 -31.665 -6.080 1.00 99.11 ATOM 25 CG1 ILE A1267 16.049 -32.935 -5.623 1.00105.43 ATOM 26 CG2 ILE A1267 15.628 -31.359 -7.551 1.00 96.17 ATOM 27 CD1 ILE A1267 15.540 -33.551 -4.332 1.00105.04 ATOM 28 N CYS A1268 15.813 -28.399 -6.436 1.00 90.91 ATOM 29 CA CYS A1268 15.227 -27.192 -7.007 1.00 88.35 ATOM 30 C CYS A1268 14.370 -27.536 -8.235 1.00 91.04 ATOM 31 O CYS A1268 14.881 -28.159 -9.172 1.00 87.92 ATOM 32 CB CYS A1268 16.295 -26.158 -7.421 1.00 74.32 ATOM 33 SG CYS A1268 15.582 -24.510 -7.799 1.00 79.43 ATOM 34 N PRO A1269 13.098 -27.080 -8.259 1.00 94.83 ATOM 35 CA PRO A1269 12.271 -27.278 -9.462 1.00 98.63 ATOM 36 C PRO A1269 12.791 -26.662 -10.772 1.00 95.09 ATOM 37 O PRO A1269 12.702 -27.297 -11.804 1.00 93.44 ATOM 38 CB PRO A1269 10.934 -26.601 -9.086 1.00 99.82 ATOM 39 CG PRO A1269 11.284 -25.596 -8.030 1.00105.31 ATOM 40 CD PRO A1269 12.387 -26.262 -7.244 1.00100.24 ATOM 41 N ILE A1270 13.372 -25.472 -10.719 1.00 91.84 ATOM 42 CA ILE A1270 13.339 -24.535 -11.846 1.00 83.43 ATOM 43 C ILE A1270 14.212 -25.002 -12.982 1.00 92.30 ATOM 44 O ILE A1270 15.176 -25.753 -12.775 1.00 77.67 ATOM 45 CB ILE A1270 13.788 -23.105 -11.417 1.00 85.20 ATOM 46 CG1 ILE A1270 13.015 -22.618 -10.187 1.00 81.82 ATOM 47 CG2 ILE A1270 13.580 -22.079 -12.528 1.00 89.63 ATOM 48 CD1 ILE A1270 11.504 -22.624 -10.324 1.00 87.72 ATOM 49 N LYS A1271 13.806 -24.581 -14.184 1.00103.56 ATOM 50 CA LYS A1271 14.626 -24.560 -15.406 1.00104.22 ATOM 51 C LYS A1271 15.593 -25.743 -15.514 1.00102.52 ATOM 52 O LYS A1271 15.156 -26.873 -15.394 1.00115.73 ATOM 53 CB LYS A1271 15.299 -23.169 -15.578 1.00104.34 ATOM 54 CG LYS A1271 16.153 -23.019 -16.839 1.00113.45 ATOM 55 CD LYS A1271 15.732 -21.941 -17.808 1.00113.12 ATOM 56 CE LYS A1271 16.193 -22.342 -19.207 1.00104.27 ATOM 57 NZ LYS A1271 15.582 -21.473 -20.245 1.00103.40 ATOM 58 N GLY A1272 16.887 -25.495 -15.705 1.00 98.21 ATOM 59 CA GLY A1272 17.871 -26.530 -15.937 1.00 92.63 ATOM 60 C GLY A1272 18.752 -26.313 -14.743 1.00 87.00 ATOM 61 O GLY A1272 19.957 -26.218 -14.880 1.00 96.27 ATOM 62 N CYS A1273 18.122 -26.166 -13.576 1.00 88.77 ATOM 63 CA CYS A1273 18.837 -26.048 -12.339 1.00 90.92 ATOM 64 C CYS A1273 18.877 -27.423 -11.699 1.00 90.73 ATOM 65 O CYS A1273 19.885 -28.104 -11.798 1.00 83.18 ATOM 66 CB CYS A1273 18.225 -25.013 -11.390 1.00 89.38 ATOM 67 SG CYS A1273 19.101 -25.093 -9.804 1.00 82.28 ATOM 68 N GLY A1274 17.797 -27.821 -11.024 1.00 93.95 ATOM 69 CA GLY A1274 17.722 -29.118 -10.367 1.00 90.93 ATOM 70 C GLY A1274 18.825 -29.622 -9.439 1.00 96.42 ATOM 71 O GLY A1274 18.923 -30.847 -9.231 1.00 91.46 ATOM 72 N LYS A1275 19.640 -28.749 -8.841 1.00 89.84 ATOM 73 CA LYS A1275 20.607 -29.287 -7.866 1.00 92.09 ATOM 74 C LYS A1275 19.909 -29.382 -6.534 1.00 82.98 ATOM 75 O LYS A1275 18.878 -28.738 -6.333 1.00 77.36 ATOM 76 CB LYS A1275 21.912 -28.524 -7.788 1.00 96.72 ATOM 77 CG LYS A1275 21.795 -27.022 -7.774 1.00 99.47 ATOM 78 CD LYS A1275 23.171 -26.450 -7.451 1.00109.18 ATOM 79 CE LYS A1275 23.341 -25.037 -7.961 1.00 97.72 ATOM 80 NZ LYS A1275 23.533 -25.008 -9.428 1.00 86.87 ATOM 81 N ASN A1276 20.425 -30.242 -5.664 1.00 79.13 ATOM 82 CA ASN A1276 19.745 -30.514 -4.395 1.00100.67 ATOM 83 C ASN A1276 20.540 -29.881 -3.263 1.00 91.68 ATOM 84 O ASN A1276 21.678 -29.526 -3.456 1.00 91.80 ATOM 85 CB ASN A1276 19.420 -32.032 -4.203 1.00 94.42 ATOM 86 CG ASN A1276 20.272 -32.721 -3.152 1.00103.17 ATOM 87 OD1 ASN A1276 19.763 -33.272 -2.149 1.00109.83 ATOM 88 ND2 ASN A1276 21.570 -32.713 -3.376 1.00107.06 ATOM 89 N PHE A1277 19.926 -29.729 -2.097 1.00 86.37 ATOM 90 CA PHE A1277 20.538 -29.017 -1.003 1.00 84.22 ATOM 91 C PHE A1277 20.457 -29.799 0.256 1.00 84.58 ATOM 92 O PHE A1277 19.525 -30.554 0.452 1.00 87.91 ATOM 93 CB PHE A1277 19.860 -27.671 -0.860 1.00 82.75 ATOM 94 CG PHE A1277 19.907 -26.909 -2.131 1.00 76.22 ATOM 95 CD1 PHE A1277 21.116 -26.413 -2.589 1.00 77.38 ATOM 96 CD2 PHE A1277 18.801 -26.805 -2.931 1.00 74.96 ATOM 97 CE1 PHE A1277 21.186 -25.754 -3.809 1.00 78.29 ATOM 98 CE2 PHE A1277 18.855 -26.148 -4.145 1.00 78.45 ATOM 99 CZ PHE A1277 20.046 -25.621 -4.586 1.00 82.37 ATOM 100 N PHE A1278 21.460 -29.620 1.105 1.00 89.30 ATOM 101 CA PHE A1278 21.469 -30.240 2.416 1.00 94.98 ATOM 102 C PHE A1278 20.150 -29.939 3.182 1.00 87.50 ATOM 103 O PHE A1278 19.846 -30.630 4.127 1.00 83.19 ATOM 104 CB PHE A1278 22.712 -29.770 3.230 1.00103.16 ATOM 105 CG PHE A1278 22.540 -28.398 3.860 1.00101.87 ATOM 106 CD1 PHE A1278 22.559 -27.231 3.065 1.00110.17 ATOM 107 CD2 PHE A1278 22.303 -28.267 5.243 1.00 94.88 ATOM 108 CE1 PHE A1278 22.366 -25.974 3.637 1.00 99.94 ATOM 109 CE2 PHE A1278 22.104 -27.010 5.822 1.00 87.89 ATOM 110 CZ PHE A1278 22.129 -25.865 5.016 1.00 96.96 ATOM 111 N SER A1279 19.390 -28.910 2.793 1.00 82.54 ATOM 112 CA SER A1279 18.272 -28.439 3.591 1.00 79.35 ATOM 113 C SER A1279 17.180 -27.776 2.781 1.00 85.03 ATOM 114 O SER A1279 17.414 -27.208 1.712 1.00 76.93 ATOM 115 CB SER A1279 18.774 -27.434 4.643 1.00 77.75 ATOM 116 OG SER A1279 18.136 -26.165 4.541 1.00 83.24 ATOM 117 N HIS A1280 15.995 -27.795 3.375 1.00 87.67 ATOM 118 CA HIS A1280 14.804 -27.190 2.806 1.00 89.72 ATOM 119 C HIS A1280 14.850 -25.675 3.014 1.00 73.95 ATOM 120 O HIS A1280 14.571 -24.923 2.083 1.00 72.98 ATOM 121 CB HIS A1280 13.544 -27.824 3.452 1.00 96.73 ATOM 122 CG HIS A1280 12.262 -27.647 2.678 1.00 96.73 ATOM 123 ND1 HIS A1280 12.059 -26.649 1.738 1.00 87.56 ATOM 124 CD2 HIS A1280 11.082 -28.308 2.780 1.00 95.93 ATOM 125 CE1 HIS A1280 10.829 -26.730 1.269 1.00 92.82 ATOM 126 NE2 HIS A1280 10.216 -27.727 1.885 1.00 98.26 ATOM 127 N LYS A1281 15.197 -25.202 4.207 1.00 73.65 ATOM 128 CA LYS A1281 15.332 -23.734 4.396 1.00 72.94 ATOM 129 C LYS A1281 16.273 -23.071 3.338 1.00 67.98 ATOM 130 O LYS A1281 15.987 -21.982 2.832 1.00 63.96 ATOM 131 CB LYS A1281 15.804 -23.414 5.809 1.00 75.50 ATOM 132 CG LYS A1281 15.445 -22.004 6.263 1.00 95.73 ATOM 133 CD LYS A1281 13.952 -21.781 6.546 1.00106.66 ATOM 134 CE LYS A1281 13.347 -22.779 7.527 1.00108.28 ATOM 135 NZ LYS A1281 14.211 -23.030 8.712 1.00116.17 ATOM 136 N TYR A1282 17.366 -23.758 2.973 1.00 65.85 ATOM 137 CA TYR A1282 18.302 -23.196 1.993 1.00 72.80 ATOM 138 C TYR A1282 17.776 -23.278 0.580 1.00 62.66 ATOM 139 O TYR A1282 18.018 -22.384 -0.242 1.00 67.14 ATOM 140 CB TYR A1282 19.757 -23.774 2.046 1.00 76.98 ATOM 141 CG TYR A1282 20.616 -23.025 1.018 1.00 74.45 ATOM 142 CD1 TYR A1282 20.943 -21.676 1.214 1.00 73.76 ATOM 143 CD2 TYR A1282 20.960 -23.608 -0.214 1.00 69.84 ATOM 144 CE1 TYR A1282 21.634 -20.952 0.250 1.00 74.45 ATOM 145 CE2 TYR A1282 21.663 -22.884 -1.171 1.00 70.72 ATOM 146 CZ TYR A1282 21.988 -21.564 -0.930 1.00 70.54 ATOM 147 OH TYR A1282 22.645 -20.848 -1.869 1.00 68.03 ATOM 148 N LEU A1283 17.090 -24.361 0.269 1.00 74.22 ATOM 149 CA LEU A1283 16.367 -24.424 -0.989 1.00 72.39 ATOM 150 C LEU A1283 15.487 -23.187 -1.165 1.00 60.13 ATOM 151 O LEU A1283 15.464 -22.593 -2.233 1.00 64.97 ATOM 152 CB LEU A1283 15.533 -25.700 -1.041 1.00 87.54 ATOM 153 CG LEU A1283 14.572 -25.882 -2.228 1.00 84.97 ATOM 154 CD1 LEU A1283 15.233 -25.644 -3.586 1.00 81.95 ATOM 155 CD2 LEU A1283 13.986 -27.301 -2.151 1.00 94.30 ATOM 156 N VAL A1284 14.822 -22.744 -0.105 1.00 60.70 ATOM 157 CA VAL A1284 13.969 -21.548 -0.246 1.00 70.67 ATOM 158 C VAL A1284 14.834 -20.325 -0.517 1.00 73.38 ATOM 159 O VAL A1284 14.524 -19.545 -1.409 1.00 78.00 ATOM 160 CB VAL A1284 12.837 -21.320 0.876 1.00 78.17 ATOM 161 CG1 VAL A1284 13.179 -21.769 2.288 1.00 89.61 ATOM 162 CG2 VAL A1284 12.399 -19.853 0.948 1.00 74.57 ATOM 163 N GLN A1285 15.927 -20.172 0.221 1.00 71.40 ATOM 164 CA GLN A1285 16.808 -19.000 0.006 1.00 75.70 ATOM 165 C GLN A1285 17.544 -19.043 -1.320 1.00 61.00 ATOM 166 O GLN A1285 17.730 -18.032 -1.951 1.00 58.36 ATOM 167 CB GLN A1285 17.804 -18.934 1.114 1.00 80.78 ATOM 168 CG GLN A1285 17.141 -18.568 2.400 1.00 83.91 ATOM 169 CD GLN A1285 18.073 -18.760 3.539 1.00 91.93 ATOM 170 OE1 GLN A1285 18.372 -17.824 4.269 1.00 94.09 ATOM 171 NE2 GLN A1285 18.559 -19.977 3.695 1.00103.47 ATOM 172 N HIS A1286 17.892 -20.254 -1.753 1.00 58.28 ATOM 173 CA HIS A1286 18.442 -20.481 -3.085 1.00 61.97 ATOM 174 C HIS A1286 17.672 -19.835 -4.240 1.00 67.69 ATOM 175 O HIS A1286 18.257 -19.443 -5.259 1.00 62.32 ATOM 176 CB HIS A1286 18.552 -21.971 -3.327 1.00 69.71 ATOM 177 CG HIS A1286 18.879 -22.316 -4.741 1.00 82.30 ATOM 178 ND1 HIS A1286 20.170 -22.524 -5.156 1.00 73.16 ATOM 179 CD2 HIS A1286 18.102 -22.447 -5.841 1.00 81.37 ATOM 180 CE1 HIS A1286 20.181 -22.785 -6.443 1.00 73.28 ATOM 181 NE2 HIS A1286 18.943 -22.746 -6.881 1.00 92.24 ATOM 182 N GLN A1287 16.358 -19.730 -4.089 1.00 69.02 ATOM 183 CA GLN A1287 15.529 -19.210 -5.169 1.00 67.11 ATOM 184 C GLN A1287 15.901 -17.790 -5.581 1.00 67.77 ATOM 185 O GLN A1287 15.601 -17.361 -6.706 1.00 69.66 ATOM 186 CB GLN A1287 14.025 -19.291 -4.812 1.00 75.02 ATOM 187 CG GLN A1287 13.458 -20.699 -4.443 1.00 71.77 ATOM 188 CD GLN A1287 13.904 -21.851 -5.343 1.00 68.09 ATOM 189 OE1 GLN A1287 14.349 -22.881 -4.859 1.00 81.06 ATOM 190 NE2 GLN A1287 13.814 -21.678 -6.650 1.00 76.67 ATOM 191 N ARG A1288 16.606 -17.045 -4.732 1.00 69.06 ATOM 192 CA ARG A1288 16.982 -15.698 -5.153 1.00 54.54 ATOM 193 C ARG A1288 17.971 -15.746 -6.344 1.00 56.09 ATOM 194 O ARG A1288 18.074 -14.789 -7.104 1.00 55.54 ATOM 195 CB ARG A1288 17.527 -14.932 -3.985 1.00 64.72 ATOM 196 CG ARG A1288 18.963 -15.286 -3.663 1.00 64.63 ATOM 197 CD ARG A1288 19.389 -14.604 -2.401 1.00 65.76 ATOM 198 NE ARG A1288 18.788 -15.247 -1.247 1.00 63.58 ATOM 199 CZ ARG A1288 18.917 -14.825 0.003 1.00 61.11 ATOM 200 NH1 ARG A1288 19.690 -13.771 0.283 1.00 60.75 ATOM 201 NH2 ARG A1288 18.334 -15.511 0.998 1.00 66.10 ATOM 202 N VAL A1289 18.640 -16.887 -6.540 1.00 57.80 ATOM 203 CA VAL A1289 19.472 -17.123 -7.737 1.00 68.86 ATOM 204 C VAL A1289 18.652 -16.970 -9.004 1.00 73.44 ATOM 205 O VAL A1289 19.149 -16.460 -9.991 1.00 75.58 ATOM 206 CB VAL A1289 20.103 -18.551 -7.680 1.00 76.22 ATOM 207 CG1 VAL A1289 20.498 -19.102 -9.032 1.00 82.06 ATOM 208 CG2 VAL A1289 21.300 -18.581 -6.727 1.00 73.56 ATOM 209 N HIS A1290 17.403 -17.430 -8.997 1.00 76.89 ATOM 210 CA HIS A1290 16.596 -17.417 -10.236 1.00 73.77 ATOM 211 C HIS A1290 15.668 -16.242 -10.261 1.00 67.02 ATOM 212 O HIS A1290 14.839 -16.202 -11.110 1.00 70.06 ATOM 213 CB HIS A1290 15.722 -18.658 -10.418 1.00 58.86 ATOM 214 CG HIS A1290 16.354 -19.963 -10.015 1.00 54.20 ATOM 215 ND1 HIS A1290 17.320 -20.619 -10.752 1.00 55.56 ATOM 216 CD2 HIS A1290 16.101 -20.759 -8.946 1.00 61.16 ATOM 217 CE1 HIS A1290 17.644 -21.763 -10.144 1.00 53.16 ATOM 218 NE2 HIS A1290 16.934 -21.849 -9.023 1.00 48.58 ATOM 219 N SER A1291 15.773 -15.316 -9.313 1.00 66.23 ATOM 220 CA SER A1291 15.099 -14.015 -9.432 1.00 59.65 ATOM 221 C SER A1291 16.103 -12.839 -9.597 1.00 69.24 ATOM 222 O SER A1291 17.291 -12.961 -9.284 1.00 63.02 ATOM 223 CB SER A1291 14.258 -13.794 -8.207 1.00 62.93 ATOM 224 OG SER A1291 14.261 -12.420 -7.964 1.00 68.29 ATOM 225 N ASP A1292 15.627 -11.684 -10.020 1.00 69.58 ATOM 226 CA ASP A1292 16.524 -10.587 -10.402 1.00 71.33 ATOM 227 C ASP A1292 16.582 -9.462 -9.426 1.00 66.42 ATOM 228 O ASP A1292 17.179 -8.434 -9.713 1.00 62.26 ATOM 229 CB ASP A1292 16.042 -10.010 -11.709 1.00 77.40 ATOM 230 CG ASP A1292 16.547 -10.750 -12.836 1.00 83.90 ATOM 231 OD1 ASP A1292 16.934 -11.907 -12.641 1.00102.00 ATOM 232 OD2 ASP A1292 16.578 -10.178 -13.921 1.00 95.46 ATOM 233 ZN ZN A1401 17.694 -23.688 -8.521 1.00 75.28 TER