HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNL TITLE REF6 ZnF2-4-NAC004 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.15 ANGSTORMS DBREF 6JNL A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 31 ALA ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN SEQRES 2 A 31 THR PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG SEQRES 3 A 31 LYS THR GLY HIS SER ATOM 1 N ALA A1323 40.847 -2.575 3.556 1.00 58.08 ATOM 2 CA ALA A1323 41.208 -3.479 4.646 1.00 46.82 ATOM 3 C ALA A1323 41.675 -4.837 4.131 1.00 50.12 ATOM 4 O ALA A1323 41.385 -5.226 2.994 1.00 51.76 ATOM 5 CB ALA A1323 40.037 -3.691 5.577 1.00 51.30 ATOM 6 N ARG A1324 42.407 -5.530 4.994 1.00 52.12 ATOM 7 CA ARG A1324 42.995 -6.818 4.760 1.00 52.09 ATOM 8 C ARG A1324 42.969 -7.596 6.092 1.00 53.76 ATOM 9 O ARG A1324 43.983 -8.036 6.633 1.00 61.36 ATOM 10 CB ARG A1324 44.409 -6.724 4.181 1.00 56.94 ATOM 11 CG ARG A1324 44.575 -5.919 2.892 1.00 59.66 ATOM 12 CD ARG A1324 46.027 -5.999 2.424 1.00 62.97 ATOM 13 NE ARG A1324 46.133 -7.229 1.708 1.00 64.90 ATOM 14 CZ ARG A1324 45.954 -7.361 0.407 1.00 68.68 ATOM 15 NH1 ARG A1324 45.979 -8.587 -0.121 1.00 79.22 ATOM 16 NH2 ARG A1324 45.791 -6.288 -0.364 1.00 73.89 ATOM 17 N PRO A1325 41.777 -7.898 6.554 1.00 55.52 ATOM 18 CA PRO A1325 41.652 -8.454 7.881 1.00 49.73 ATOM 19 C PRO A1325 42.117 -9.893 8.041 1.00 53.26 ATOM 20 O PRO A1325 42.167 -10.343 9.173 1.00 54.33 ATOM 21 CB PRO A1325 40.149 -8.325 8.145 1.00 54.56 ATOM 22 CG PRO A1325 39.548 -8.463 6.787 1.00 58.36 ATOM 23 CD PRO A1325 40.518 -7.918 5.813 1.00 50.79 ATOM 24 N TYR A1326 42.362 -10.641 6.965 1.00 50.72 ATOM 25 CA TYR A1326 42.721 -12.028 7.096 1.00 44.84 ATOM 26 C TYR A1326 44.261 -12.075 7.214 1.00 59.12 ATOM 27 O TYR A1326 44.985 -11.702 6.290 1.00 62.38 ATOM 28 CB TYR A1326 42.198 -12.827 5.916 1.00 49.48 ATOM 29 CG TYR A1326 40.709 -12.797 5.876 1.00 54.98 ATOM 30 CD1 TYR A1326 39.957 -13.571 6.762 1.00 57.64 ATOM 31 CD2 TYR A1326 40.038 -11.996 4.993 1.00 53.15 ATOM 32 CE1 TYR A1326 38.584 -13.538 6.770 1.00 54.27 ATOM 33 CE2 TYR A1326 38.668 -11.963 4.978 1.00 53.72 ATOM 34 CZ TYR A1326 37.945 -12.710 5.890 1.00 55.73 ATOM 35 OH TYR A1326 36.588 -12.641 5.895 1.00 47.75 ATOM 36 N VAL A1327 44.752 -12.521 8.366 1.00 67.06 ATOM 37 CA VAL A1327 46.199 -12.478 8.712 1.00 64.34 ATOM 38 C VAL A1327 46.672 -13.890 8.950 1.00 61.85 ATOM 39 O VAL A1327 46.231 -14.513 9.901 1.00 62.07 ATOM 40 CB VAL A1327 46.447 -11.623 9.969 1.00 63.67 ATOM 41 CG1 VAL A1327 47.915 -11.692 10.386 1.00 66.93 ATOM 42 CG2 VAL A1327 46.035 -10.165 9.683 1.00 63.09 ATOM 43 N CYS A1328 47.536 -14.418 8.079 1.00 60.40 ATOM 44 CA CYS A1328 48.147 -15.745 8.307 1.00 64.14 ATOM 45 C CYS A1328 48.928 -15.825 9.625 1.00 70.44 ATOM 46 O CYS A1328 49.787 -14.981 9.879 1.00 78.84 ATOM 47 CB CYS A1328 49.117 -16.094 7.215 1.00 71.78 ATOM 48 SG CYS A1328 49.478 -17.812 7.435 1.00 68.59 ATOM 49 N ALA A1329 48.596 -16.813 10.455 1.00 74.31 ATOM 50 CA ALA A1329 49.240 -17.026 11.767 1.00 75.98 ATOM 51 C ALA A1329 50.546 -17.875 11.734 1.00 75.11 ATOM 52 O ALA A1329 51.254 -17.864 12.707 1.00 77.32 ATOM 53 CB ALA A1329 48.248 -17.674 12.715 1.00 76.15 ATOM 54 N GLU A1330 50.858 -18.597 10.643 1.00 82.54 ATOM 55 CA GLU A1330 52.096 -19.419 10.554 1.00 89.76 ATOM 56 C GLU A1330 53.274 -18.592 11.002 1.00 88.11 ATOM 57 O GLU A1330 53.358 -17.405 10.617 1.00 86.83 ATOM 58 CB GLU A1330 52.383 -19.968 9.145 1.00 90.72 ATOM 59 CG GLU A1330 53.565 -20.957 9.036 1.00 97.52 ATOM 60 CD GLU A1330 53.253 -22.375 9.531 1.00 94.38 ATOM 61 OE1 GLU A1330 52.089 -22.668 9.880 1.00 90.19 ATOM 62 OE2 GLU A1330 54.188 -23.209 9.563 1.00108.53 ATOM 63 N PRO A1331 54.159 -19.196 11.845 1.00 91.63 ATOM 64 CA PRO A1331 55.282 -18.399 12.332 1.00 95.17 ATOM 65 C PRO A1331 56.093 -17.813 11.152 1.00 89.30 ATOM 66 O PRO A1331 56.454 -18.575 10.212 1.00 81.76 ATOM 67 CB PRO A1331 56.074 -19.416 13.191 1.00101.17 ATOM 68 CG PRO A1331 55.058 -20.418 13.659 1.00 85.87 ATOM 69 CD PRO A1331 54.122 -20.539 12.484 1.00 82.58 ATOM 70 N ASP A1332 56.277 -16.478 11.140 1.00 81.35 ATOM 71 CA ASP A1332 57.112 -15.836 10.106 1.00 88.51 ATOM 72 C ASP A1332 56.476 -15.766 8.694 1.00 88.73 ATOM 73 O ASP A1332 57.136 -15.234 7.788 1.00 77.92 ATOM 74 CB ASP A1332 58.509 -16.545 9.928 1.00 93.45 ATOM 75 CG ASP A1332 59.324 -16.661 11.228 1.00 87.26 ATOM 76 OD1 ASP A1332 59.524 -15.616 11.871 1.00 90.49 ATOM 77 OD2 ASP A1332 59.801 -17.786 11.571 1.00 88.03 ATOM 78 N CYS A1333 55.251 -16.291 8.473 1.00 78.56 ATOM 79 CA CYS A1333 54.565 -16.128 7.151 1.00 82.04 ATOM 80 C CYS A1333 54.308 -14.660 6.772 1.00 72.09 ATOM 81 O CYS A1333 54.605 -14.265 5.640 1.00 83.56 ATOM 82 CB CYS A1333 53.229 -16.902 7.031 1.00 80.20 ATOM 83 SG CYS A1333 52.352 -16.541 5.475 1.00 72.93 ATOM 84 N GLY A1334 53.739 -13.878 7.693 1.00 67.08 ATOM 85 CA GLY A1334 53.493 -12.447 7.472 1.00 71.75 ATOM 86 C GLY A1334 52.425 -12.046 6.402 1.00 80.82 ATOM 87 O GLY A1334 52.183 -10.839 6.187 1.00 76.47 ATOM 88 N GLN A1335 51.783 -13.006 5.726 1.00 61.95 ATOM 89 CA GLN A1335 50.847 -12.629 4.666 1.00 69.21 ATOM 90 C GLN A1335 49.444 -12.232 5.129 1.00 67.35 ATOM 91 O GLN A1335 48.927 -12.736 6.140 1.00 64.89 ATOM 92 CB GLN A1335 50.719 -13.736 3.708 1.00 68.12 ATOM 93 CG GLN A1335 51.940 -13.791 2.843 1.00 67.90 ATOM 94 CD GLN A1335 51.736 -14.788 1.775 1.00 72.66 ATOM 95 OE1 GLN A1335 52.482 -15.724 1.674 1.00 83.15 ATOM 96 NE2 GLN A1335 50.680 -14.628 1.000 1.00 77.23 ATOM 97 N THR A1336 48.836 -11.305 4.402 1.00 62.86 ATOM 98 CA THR A1336 47.495 -10.833 4.754 1.00 64.07 ATOM 99 C THR A1336 46.607 -10.799 3.530 1.00 62.79 ATOM 100 O THR A1336 47.096 -10.774 2.425 1.00 56.40 ATOM 101 CB THR A1336 47.513 -9.478 5.446 1.00 63.31 ATOM 102 OG1 THR A1336 47.784 -8.457 4.486 1.00 54.51 ATOM 103 CG2 THR A1336 48.526 -9.472 6.518 1.00 59.75 ATOM 104 N PHE A1337 45.296 -10.881 3.735 1.00 59.12 ATOM 105 CA PHE A1337 44.350 -10.956 2.621 1.00 54.36 ATOM 106 C PHE A1337 43.112 -10.084 2.812 1.00 53.45 ATOM 107 O PHE A1337 42.633 -9.846 3.944 1.00 53.91 ATOM 108 CB PHE A1337 43.961 -12.387 2.379 1.00 57.13 ATOM 109 CG PHE A1337 45.130 -13.275 2.242 1.00 54.86 ATOM 110 CD1 PHE A1337 45.738 -13.790 3.367 1.00 57.40 ATOM 111 CD2 PHE A1337 45.681 -13.518 0.992 1.00 60.80 ATOM 112 CE1 PHE A1337 46.877 -14.588 3.252 1.00 61.37 ATOM 113 CE2 PHE A1337 46.783 -14.330 0.852 1.00 59.16 ATOM 114 CZ PHE A1337 47.395 -14.854 1.990 1.00 58.33 ATOM 115 N ARG A1338 42.660 -9.534 1.697 1.00 46.02 ATOM 116 CA ARG A1338 41.409 -8.834 1.677 1.00 45.54 ATOM 117 C ARG A1338 40.169 -9.762 1.693 1.00 46.46 ATOM 118 O ARG A1338 39.171 -9.379 2.280 1.00 43.88 ATOM 119 CB ARG A1338 41.348 -7.908 0.486 1.00 47.41 ATOM 120 CG ARG A1338 40.097 -7.035 0.528 1.00 51.48 ATOM 121 CD ARG A1338 40.242 -5.847 -0.394 1.00 51.25 ATOM 122 NE ARG A1338 41.310 -5.067 0.130 1.00 49.58 ATOM 123 CZ ARG A1338 42.317 -4.552 -0.566 1.00 59.98 ATOM 124 NH1 ARG A1338 43.272 -3.905 0.087 1.00 62.09 ATOM 125 NH2 ARG A1338 42.380 -4.650 -1.882 1.00 57.92 ATOM 126 N PHE A1339 40.249 -10.948 1.086 1.00 46.19 ATOM 127 CA PHE A1339 39.105 -11.802 0.791 1.00 46.54 ATOM 128 C PHE A1339 39.293 -13.177 1.362 1.00 53.84 ATOM 129 O PHE A1339 40.366 -13.758 1.205 1.00 49.90 ATOM 130 CB PHE A1339 38.862 -11.893 -0.723 1.00 47.11 ATOM 131 CG PHE A1339 38.542 -10.560 -1.326 1.00 51.45 ATOM 132 CD1 PHE A1339 37.312 -9.956 -1.057 1.00 46.31 ATOM 133 CD2 PHE A1339 39.513 -9.830 -2.033 1.00 51.07 ATOM 134 CE1 PHE A1339 37.024 -8.679 -1.536 1.00 48.37 ATOM 135 CE2 PHE A1339 39.214 -8.559 -2.516 1.00 50.06 ATOM 136 CZ PHE A1339 37.970 -7.995 -2.279 1.00 45.61 ATOM 137 N VAL A1340 38.237 -13.712 2.001 1.00 48.81 ATOM 138 CA VAL A1340 38.360 -14.958 2.678 1.00 42.49 ATOM 139 C VAL A1340 38.769 -16.101 1.756 1.00 52.92 ATOM 140 O VAL A1340 39.574 -16.952 2.164 1.00 46.14 ATOM 141 CB VAL A1340 37.117 -15.322 3.476 1.00 52.18 ATOM 142 CG1 VAL A1340 35.901 -15.660 2.596 1.00 52.99 ATOM 143 CG2 VAL A1340 37.439 -16.492 4.415 1.00 52.74 ATOM 144 N SER A1341 38.246 -16.118 0.527 1.00 44.82 ATOM 145 CA SER A1341 38.617 -17.174 -0.422 1.00 49.55 ATOM 146 C SER A1341 40.144 -17.195 -0.616 1.00 57.82 ATOM 147 O SER A1341 40.744 -18.258 -0.638 1.00 51.47 ATOM 148 CB SER A1341 37.881 -17.024 -1.741 1.00 47.55 ATOM 149 OG SER A1341 38.193 -18.062 -2.705 1.00 49.99 ATOM 150 N ASP A1342 40.760 -16.018 -0.717 1.00 55.78 ATOM 151 CA ASP A1342 42.202 -15.941 -0.919 1.00 52.55 ATOM 152 C ASP A1342 42.957 -16.510 0.280 1.00 55.68 ATOM 153 O ASP A1342 43.937 -17.254 0.114 1.00 51.21 ATOM 154 CB ASP A1342 42.646 -14.504 -1.170 1.00 48.85 ATOM 155 CG ASP A1342 42.003 -13.918 -2.427 1.00 49.44 ATOM 156 OD1 ASP A1342 41.684 -14.679 -3.343 1.00 48.25 ATOM 157 OD2 ASP A1342 41.767 -12.723 -2.511 1.00 54.79 ATOM 158 N PHE A1343 42.467 -16.181 1.469 1.00 50.87 ATOM 159 CA PHE A1343 43.063 -16.677 2.675 1.00 52.27 ATOM 160 C PHE A1343 42.964 -18.207 2.797 1.00 61.94 ATOM 161 O PHE A1343 43.951 -18.884 3.153 1.00 61.44 ATOM 162 CB PHE A1343 42.481 -15.971 3.838 1.00 56.18 ATOM 163 CG PHE A1343 43.027 -16.400 5.173 1.00 60.41 ATOM 164 CD1 PHE A1343 44.392 -16.615 5.378 1.00 64.18 ATOM 165 CD2 PHE A1343 42.153 -16.544 6.276 1.00 55.16 ATOM 166 CE1 PHE A1343 44.871 -16.996 6.644 1.00 66.49 ATOM 167 CE2 PHE A1343 42.631 -16.879 7.553 1.00 57.43 ATOM 168 CZ PHE A1343 43.995 -17.129 7.728 1.00 66.92 ATOM 169 N SER A1344 41.806 -18.746 2.446 1.00 57.88 ATOM 170 CA SER A1344 41.614 -20.189 2.364 1.00 59.10 ATOM 171 C SER A1344 42.484 -20.901 1.287 1.00 64.52 ATOM 172 O SER A1344 43.030 -21.988 1.526 1.00 65.85 ATOM 173 CB SER A1344 40.140 -20.491 2.068 1.00 54.32 ATOM 174 OG SER A1344 39.317 -19.932 3.065 1.00 57.74 ATOM 175 N ARG A1345 42.554 -20.315 0.100 1.00 59.52 ATOM 176 CA ARG A1345 43.435 -20.795 -0.954 1.00 63.45 ATOM 177 C ARG A1345 44.881 -20.916 -0.441 1.00 69.00 ATOM 178 O ARG A1345 45.536 -21.939 -0.651 1.00 68.36 ATOM 179 CB ARG A1345 43.435 -19.824 -2.112 1.00 63.23 ATOM 180 CG ARG A1345 44.253 -20.285 -3.293 1.00 61.80 ATOM 181 CD ARG A1345 44.171 -19.265 -4.436 1.00 66.97 ATOM 182 NE ARG A1345 43.182 -19.711 -5.429 1.00 73.40 ATOM 183 CZ ARG A1345 42.013 -19.143 -5.696 1.00 75.15 ATOM 184 NH1 ARG A1345 41.645 -18.059 -5.064 1.00 91.30 ATOM 185 NH2 ARG A1345 41.197 -19.658 -6.613 1.00 82.49 ATOM 186 N HIS A1346 45.359 -19.883 0.233 1.00 60.51 ATOM 187 CA HIS A1346 46.733 -19.881 0.735 1.00 70.76 ATOM 188 C HIS A1346 47.031 -20.930 1.830 1.00 77.73 ATOM 189 O HIS A1346 48.080 -21.537 1.844 1.00 87.54 ATOM 190 CB HIS A1346 47.093 -18.498 1.205 1.00 64.24 ATOM 191 CG HIS A1346 48.238 -18.442 2.166 1.00 76.63 ATOM 192 ND1 HIS A1346 49.559 -18.526 1.775 1.00 70.70 ATOM 193 CD2 HIS A1346 48.257 -18.202 3.496 1.00 77.95 ATOM 194 CE1 HIS A1346 50.340 -18.359 2.824 1.00 71.88 ATOM 195 NE2 HIS A1346 49.573 -18.170 3.879 1.00 82.24 ATOM 196 N LYS A1347 46.116 -21.136 2.738 1.00 67.56 ATOM 197 CA LYS A1347 46.241 -22.219 3.684 1.00 69.28 ATOM 198 C LYS A1347 46.264 -23.607 2.995 1.00 74.85 ATOM 199 O LYS A1347 47.047 -24.474 3.343 1.00 72.50 ATOM 200 CB LYS A1347 45.034 -22.193 4.595 1.00 73.05 ATOM 201 CG LYS A1347 44.950 -21.008 5.545 1.00 72.38 ATOM 202 CD LYS A1347 43.490 -20.837 5.938 1.00 80.14 ATOM 203 CE LYS A1347 43.309 -20.489 7.395 1.00 83.55 ATOM 204 NZ LYS A1347 41.850 -20.417 7.643 1.00 86.57 ATOM 205 N ARG A1348 45.327 -23.798 2.087 1.00 63.92 ATOM 206 CA ARG A1348 45.205 -24.953 1.240 1.00 76.88 ATOM 207 C ARG A1348 46.569 -25.165 0.587 1.00 84.66 ATOM 208 O ARG A1348 47.225 -26.144 0.858 1.00 82.80 ATOM 209 CB ARG A1348 44.082 -24.664 0.195 1.00 95.07 ATOM 210 CG ARG A1348 44.031 -25.461 -1.127 1.00102.32 ATOM 211 CD ARG A1348 42.818 -26.364 -1.203 1.00 96.28 ATOM 212 NE ARG A1348 42.696 -27.082 0.064 1.00107.26 ATOM 213 CZ ARG A1348 42.012 -28.207 0.268 1.00112.85 ATOM 214 NH1 ARG A1348 41.998 -28.733 1.495 1.00106.87 ATOM 215 NH2 ARG A1348 41.376 -28.830 -0.719 1.00115.57 ATOM 216 N LYS A1349 47.003 -24.219 -0.241 1.00 87.98 ATOM 217 CA LYS A1349 48.287 -24.303 -0.933 1.00 84.31 ATOM 218 C LYS A1349 49.427 -24.672 0.022 1.00 86.67 ATOM 219 O LYS A1349 50.112 -25.645 -0.210 1.00 85.55 ATOM 220 CB LYS A1349 48.598 -22.983 -1.619 1.00 86.25 ATOM 221 CG LYS A1349 50.041 -22.844 -2.113 1.00 97.14 ATOM 222 CD LYS A1349 50.109 -22.256 -3.497 1.00 91.79 ATOM 223 CE LYS A1349 49.354 -23.178 -4.435 1.00 96.54 ATOM 224 NZ LYS A1349 49.936 -23.138 -5.790 1.00111.49 ATOM 225 N THR A1350 49.563 -23.928 1.115 1.00 81.91 ATOM 226 CA THR A1350 50.740 -23.955 1.960 1.00 73.25 ATOM 227 C THR A1350 50.735 -24.831 3.219 1.00 76.44 ATOM 228 O THR A1350 51.792 -25.112 3.745 1.00 79.58 ATOM 229 CB THR A1350 51.090 -22.527 2.446 1.00 71.93 ATOM 230 OG1 THR A1350 50.134 -22.055 3.433 1.00 79.02 ATOM 231 CG2 THR A1350 51.202 -21.591 1.258 1.00 63.91 ATOM 232 N GLY A1351 49.573 -25.184 3.744 1.00 83.17 ATOM 233 CA GLY A1351 49.479 -25.880 5.037 1.00 74.61 ATOM 234 C GLY A1351 49.479 -25.066 6.327 1.00 80.03 ATOM 235 O GLY A1351 49.507 -25.653 7.417 1.00 86.98 ATOM 236 N HIS A1352 49.404 -23.737 6.239 1.00 81.59 ATOM 237 CA HIS A1352 49.397 -22.863 7.439 1.00 77.11 ATOM 238 C HIS A1352 47.997 -22.961 8.088 1.00 80.34 ATOM 239 O HIS A1352 47.032 -23.076 7.360 1.00 99.16 ATOM 240 CB HIS A1352 49.768 -21.449 7.012 1.00 81.81 ATOM 241 CG HIS A1352 51.073 -21.367 6.272 1.00 90.29 ATOM 242 ND1 HIS A1352 51.777 -20.194 6.133 1.00102.71 ATOM 243 CD2 HIS A1352 51.821 -22.313 5.655 1.00 86.31 ATOM 244 CE1 HIS A1352 52.888 -20.408 5.452 1.00 82.79 ATOM 245 NE2 HIS A1352 52.934 -21.687 5.149 1.00 79.92 ATOM 246 N SER A1353 47.891 -22.990 9.426 1.00 97.94 ATOM 247 CA SER A1353 46.678 -23.478 10.201 1.00 88.17 ATOM 248 C SER A1353 46.003 -24.737 9.641 1.00 85.08 ATOM 249 O SER A1353 45.261 -25.401 10.364 1.00 90.65 ATOM 250 CB SER A1353 45.619 -22.379 10.393 1.00 92.70 ATOM 251 OG SER A1353 46.226 -21.101 10.452 1.00102.43 ATOM 252 ZN ZN A1402 50.825 -18.277 5.653 1.00 72.36 TER