HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNL TITLE REF6 ZnF2-4-NAC004 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.15 ANGSTORMS DBREF 6JNL A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 30 ASP ARG PRO LEU LYS CYS PRO TRP LYS GLY CYS LYS MET SEQRES 2 A 30 THR PHE LYS TRP ALA TRP SER ARG THR GLU HIS ILE ARG SEQRES 3 A 30 VAL HIS THR GLY ATOM 1 N ASP A1293 15.924 -9.609 -8.292 1.00 69.22 ATOM 2 CA ASP A1293 16.016 -8.584 -7.287 1.00 72.27 ATOM 3 C ASP A1293 17.415 -8.696 -6.745 1.00 70.12 ATOM 4 O ASP A1293 17.964 -9.795 -6.635 1.00 63.51 ATOM 5 CB ASP A1293 15.013 -8.751 -6.142 1.00 83.02 ATOM 6 CG ASP A1293 13.576 -8.629 -6.608 1.00 98.44 ATOM 7 OD1 ASP A1293 13.218 -7.609 -7.228 1.00109.78 ATOM 8 OD2 ASP A1293 12.801 -9.572 -6.385 1.00114.96 ATOM 9 N ARG A1294 17.972 -7.531 -6.475 1.00 69.39 ATOM 10 CA ARG A1294 19.255 -7.340 -5.828 1.00 64.56 ATOM 11 C ARG A1294 18.969 -6.355 -4.689 1.00 61.77 ATOM 12 O ARG A1294 19.298 -5.192 -4.803 1.00 57.51 ATOM 13 CB ARG A1294 20.236 -6.771 -6.849 1.00 61.30 ATOM 14 CG ARG A1294 20.510 -7.719 -8.048 1.00 50.16 ATOM 15 CD ARG A1294 21.682 -7.170 -8.907 1.00 56.98 ATOM 16 NE ARG A1294 22.977 -7.308 -8.225 1.00 61.82 ATOM 17 CZ ARG A1294 23.687 -8.448 -8.138 1.00 63.29 ATOM 18 NH1 ARG A1294 23.282 -9.570 -8.736 1.00 59.40 ATOM 19 NH2 ARG A1294 24.824 -8.492 -7.447 1.00 56.45 ATOM 20 N PRO A1295 18.305 -6.836 -3.610 1.00 57.89 ATOM 21 CA PRO A1295 17.855 -5.973 -2.545 1.00 64.50 ATOM 22 C PRO A1295 18.907 -5.387 -1.612 1.00 66.61 ATOM 23 O PRO A1295 18.600 -4.388 -0.996 1.00 65.82 ATOM 24 CB PRO A1295 16.886 -6.860 -1.742 1.00 62.77 ATOM 25 CG PRO A1295 17.184 -8.241 -2.074 1.00 58.87 ATOM 26 CD PRO A1295 18.010 -8.253 -3.323 1.00 57.80 ATOM 27 N LEU A1296 20.106 -5.965 -1.499 1.00 64.28 ATOM 28 CA LEU A1296 21.162 -5.407 -0.598 1.00 53.33 ATOM 29 C LEU A1296 21.930 -4.368 -1.377 1.00 53.12 ATOM 30 O LEU A1296 22.167 -4.527 -2.592 1.00 57.40 ATOM 31 CB LEU A1296 22.089 -6.509 -0.134 1.00 56.14 ATOM 32 CG LEU A1296 21.338 -7.715 0.490 1.00 59.66 ATOM 33 CD1 LEU A1296 22.256 -8.820 0.933 1.00 64.24 ATOM 34 CD2 LEU A1296 20.447 -7.343 1.676 1.00 59.61 ATOM 35 N LYS A1297 22.280 -3.300 -0.694 1.00 50.74 ATOM 36 CA LYS A1297 22.912 -2.126 -1.300 1.00 58.58 ATOM 37 C LYS A1297 24.268 -1.834 -0.617 1.00 57.31 ATOM 38 O LYS A1297 24.484 -2.204 0.527 1.00 60.88 ATOM 39 CB LYS A1297 22.002 -0.898 -1.181 1.00 67.93 ATOM 40 CG LYS A1297 20.568 -1.092 -1.683 1.00 82.91 ATOM 41 CD LYS A1297 20.517 -1.413 -3.185 1.00102.32 ATOM 42 CE LYS A1297 19.453 -2.438 -3.616 1.00103.96 ATOM 43 NZ LYS A1297 18.224 -1.847 -4.197 1.00116.82 ATOM 44 N CYS A1298 25.185 -1.212 -1.351 1.00 54.40 ATOM 45 CA CYS A1298 26.465 -0.821 -0.815 1.00 50.20 ATOM 46 C CYS A1298 26.264 0.436 -0.015 1.00 52.26 ATOM 47 O CYS A1298 25.765 1.400 -0.549 1.00 54.44 ATOM 48 CB CYS A1298 27.520 -0.542 -1.896 1.00 56.36 ATOM 49 SG CYS A1298 29.151 -0.160 -1.164 1.00 50.57 ATOM 50 N PRO A1299 26.751 0.469 1.231 1.00 53.74 ATOM 51 CA PRO A1299 26.604 1.683 2.008 1.00 56.91 ATOM 52 C PRO A1299 27.612 2.735 1.662 1.00 51.00 ATOM 53 O PRO A1299 27.543 3.783 2.193 1.00 56.10 ATOM 54 CB PRO A1299 26.837 1.191 3.446 1.00 58.28 ATOM 55 CG PRO A1299 27.828 0.097 3.270 1.00 52.34 ATOM 56 CD PRO A1299 27.399 -0.586 2.018 1.00 49.75 ATOM 57 N TRP A1300 28.550 2.505 0.776 1.00 54.39 ATOM 58 CA TRP A1300 29.473 3.575 0.448 1.00 49.70 ATOM 59 C TRP A1300 28.820 4.640 -0.410 1.00 57.40 ATOM 60 O TRP A1300 27.987 4.371 -1.297 1.00 53.62 ATOM 61 CB TRP A1300 30.656 3.037 -0.304 1.00 56.21 ATOM 62 CG TRP A1300 31.870 3.845 -0.243 1.00 57.73 ATOM 63 CD1 TRP A1300 32.312 4.769 -1.160 1.00 61.22 ATOM 64 CD2 TRP A1300 32.865 3.775 0.766 1.00 57.59 ATOM 65 NE1 TRP A1300 33.543 5.258 -0.777 1.00 56.90 ATOM 66 CE2 TRP A1300 33.896 4.675 0.406 1.00 55.60 ATOM 67 CE3 TRP A1300 32.983 3.047 1.954 1.00 54.94 ATOM 68 CZ2 TRP A1300 35.035 4.851 1.182 1.00 61.87 ATOM 69 CZ3 TRP A1300 34.110 3.212 2.718 1.00 55.92 ATOM 70 CH2 TRP A1300 35.132 4.112 2.328 1.00 51.60 ATOM 71 N LYS A1301 29.258 5.850 -0.133 1.00 62.16 ATOM 72 CA LYS A1301 28.667 7.057 -0.654 1.00 69.80 ATOM 73 C LYS A1301 28.761 7.033 -2.135 1.00 64.60 ATOM 74 O LYS A1301 29.852 7.120 -2.650 1.00 65.80 ATOM 75 CB LYS A1301 29.481 8.224 -0.153 1.00 84.41 ATOM 76 CG LYS A1301 29.334 9.542 -0.872 1.00 89.88 ATOM 77 CD LYS A1301 28.092 10.272 -0.468 1.00 83.80 ATOM 78 CE LYS A1301 28.335 11.718 -0.829 1.00 85.97 ATOM 79 NZ LYS A1301 27.019 12.337 -1.037 1.00 86.70 ATOM 80 N GLY A1302 27.609 6.901 -2.793 1.00 63.33 ATOM 81 CA GLY A1302 27.522 6.915 -4.231 1.00 69.43 ATOM 82 C GLY A1302 28.235 5.762 -4.866 1.00 70.13 ATOM 83 O GLY A1302 28.924 5.940 -5.822 1.00 76.90 ATOM 84 N CYS A1303 28.133 4.588 -4.276 1.00 70.12 ATOM 85 CA CYS A1303 28.474 3.366 -4.961 1.00 69.14 ATOM 86 C CYS A1303 27.121 2.727 -5.238 1.00 63.43 ATOM 87 O CYS A1303 26.243 2.727 -4.358 1.00 61.32 ATOM 88 CB CYS A1303 29.353 2.476 -4.083 1.00 69.58 ATOM 89 SG CYS A1303 29.544 0.819 -4.729 1.00 61.60 ATOM 90 N LYS A1304 26.957 2.212 -6.453 1.00 59.62 ATOM 91 CA LYS A1304 25.650 1.751 -6.956 1.00 62.66 ATOM 92 C LYS A1304 25.549 0.263 -6.962 1.00 64.75 ATOM 93 O LYS A1304 24.478 -0.306 -7.265 1.00 57.42 ATOM 94 CB LYS A1304 25.388 2.363 -8.346 1.00 76.82 ATOM 95 CG LYS A1304 24.705 3.740 -8.338 1.00 83.00 ATOM 96 CD LYS A1304 24.912 4.555 -7.049 1.00101.08 ATOM 97 CE LYS A1304 23.946 5.715 -6.909 1.00109.12 ATOM 98 NZ LYS A1304 23.996 6.568 -8.129 1.00121.91 ATOM 99 N MET A1305 26.633 -0.387 -6.543 1.00 62.16 ATOM 100 CA MET A1305 26.614 -1.843 -6.383 1.00 60.40 ATOM 101 C MET A1305 25.480 -2.342 -5.493 1.00 56.84 ATOM 102 O MET A1305 25.157 -1.732 -4.470 1.00 56.50 ATOM 103 CB MET A1305 27.927 -2.334 -5.806 1.00 69.74 ATOM 104 CG MET A1305 28.307 -3.726 -6.215 1.00 85.68 ATOM 105 SD MET A1305 28.768 -3.728 -7.945 1.00103.11 ATOM 106 CE MET A1305 29.245 -2.039 -8.431 1.00 77.87 ATOM 107 N THR A1306 24.925 -3.493 -5.872 1.00 53.46 ATOM 108 CA THR A1306 23.821 -4.109 -5.195 1.00 53.90 ATOM 109 C THR A1306 24.079 -5.595 -5.133 1.00 52.53 ATOM 110 O THR A1306 24.876 -6.068 -5.875 1.00 46.76 ATOM 111 CB THR A1306 22.513 -3.886 -5.958 1.00 59.68 ATOM 112 OG1 THR A1306 22.605 -4.549 -7.214 1.00 61.05 ATOM 113 CG2 THR A1306 22.272 -2.429 -6.173 1.00 50.73 ATOM 114 N PHE A1307 23.392 -6.329 -4.266 1.00 49.63 ATOM 115 CA PHE A1307 23.746 -7.699 -4.048 1.00 49.49 ATOM 116 C PHE A1307 22.548 -8.507 -3.713 1.00 54.48 ATOM 117 O PHE A1307 21.519 -7.942 -3.343 1.00 54.32 ATOM 118 CB PHE A1307 24.688 -7.826 -2.826 1.00 50.74 ATOM 119 CG PHE A1307 25.866 -6.941 -2.910 1.00 55.35 ATOM 120 CD1 PHE A1307 25.796 -5.660 -2.432 1.00 58.21 ATOM 121 CD2 PHE A1307 27.016 -7.368 -3.565 1.00 57.01 ATOM 122 CE1 PHE A1307 26.864 -4.832 -2.570 1.00 54.92 ATOM 123 CE2 PHE A1307 28.098 -6.547 -3.697 1.00 54.91 ATOM 124 CZ PHE A1307 28.000 -5.268 -3.215 1.00 57.00 ATOM 125 N LYS A1308 22.706 -9.832 -3.785 1.00 48.82 ATOM 126 CA LYS A1308 21.683 -10.755 -3.225 1.00 54.14 ATOM 127 C LYS A1308 22.091 -11.440 -1.948 1.00 57.77 ATOM 128 O LYS A1308 21.257 -11.967 -1.212 1.00 51.92 ATOM 129 CB LYS A1308 21.419 -11.865 -4.236 1.00 51.87 ATOM 130 CG LYS A1308 21.111 -11.343 -5.642 1.00 56.01 ATOM 131 CD LYS A1308 20.443 -12.452 -6.457 1.00 58.05 ATOM 132 CE LYS A1308 20.225 -12.040 -7.908 1.00 61.23 ATOM 133 NZ LYS A1308 19.950 -13.300 -8.666 1.00 62.59 ATOM 134 N TRP A1309 23.401 -11.514 -1.735 1.00 49.94 ATOM 135 CA TRP A1309 23.941 -12.263 -0.647 1.00 47.36 ATOM 136 C TRP A1309 24.684 -11.329 0.241 1.00 48.40 ATOM 137 O TRP A1309 25.512 -10.502 -0.222 1.00 52.24 ATOM 138 CB TRP A1309 24.884 -13.257 -1.241 1.00 54.24 ATOM 139 CG TRP A1309 24.242 -14.307 -2.108 1.00 56.22 ATOM 140 CD1 TRP A1309 24.464 -14.543 -3.425 1.00 55.91 ATOM 141 CD2 TRP A1309 23.332 -15.319 -1.661 1.00 57.96 ATOM 142 NE1 TRP A1309 23.733 -15.652 -3.843 1.00 56.70 ATOM 143 CE2 TRP A1309 23.045 -16.151 -2.771 1.00 58.52 ATOM 144 CE3 TRP A1309 22.764 -15.620 -0.425 1.00 56.10 ATOM 145 CZ2 TRP A1309 22.185 -17.236 -2.690 1.00 60.11 ATOM 146 CZ3 TRP A1309 21.913 -16.727 -0.342 1.00 61.74 ATOM 147 CH2 TRP A1309 21.622 -17.507 -1.478 1.00 62.18 ATOM 148 N ALA A1310 24.451 -11.469 1.527 1.00 47.56 ATOM 149 CA ALA A1310 24.955 -10.491 2.451 1.00 51.14 ATOM 150 C ALA A1310 26.515 -10.605 2.528 1.00 50.87 ATOM 151 O ALA A1310 27.210 -9.600 2.704 1.00 51.01 ATOM 152 CB ALA A1310 24.338 -10.738 3.800 1.00 47.50 ATOM 153 N TRP A1311 27.038 -11.831 2.427 1.00 45.84 ATOM 154 CA TRP A1311 28.472 -12.027 2.474 1.00 47.61 ATOM 155 C TRP A1311 29.174 -11.248 1.301 1.00 49.79 ATOM 156 O TRP A1311 30.255 -10.679 1.510 1.00 49.53 ATOM 157 CB TRP A1311 28.879 -13.493 2.465 1.00 43.56 ATOM 158 CG TRP A1311 30.370 -13.624 2.661 1.00 50.75 ATOM 159 CD1 TRP A1311 31.303 -14.042 1.742 1.00 54.99 ATOM 160 CD2 TRP A1311 31.092 -13.259 3.831 1.00 48.04 ATOM 161 NE1 TRP A1311 32.545 -13.985 2.287 1.00 52.13 ATOM 162 CE2 TRP A1311 32.453 -13.477 3.560 1.00 50.90 ATOM 163 CE3 TRP A1311 30.710 -12.749 5.095 1.00 50.23 ATOM 164 CZ2 TRP A1311 33.456 -13.227 4.507 1.00 50.58 ATOM 165 CZ3 TRP A1311 31.712 -12.457 6.035 1.00 50.19 ATOM 166 CH2 TRP A1311 33.068 -12.717 5.739 1.00 51.84 ATOM 167 N SER A1312 28.552 -11.176 0.118 1.00 47.82 ATOM 168 CA SER A1312 29.180 -10.510 -0.970 1.00 48.78 ATOM 169 C SER A1312 29.278 -9.087 -0.570 1.00 51.31 ATOM 170 O SER A1312 30.287 -8.430 -0.895 1.00 43.77 ATOM 171 CB SER A1312 28.403 -10.542 -2.289 1.00 53.53 ATOM 172 OG SER A1312 28.425 -11.806 -2.885 1.00 63.61 ATOM 173 N ARG A1313 28.204 -8.573 0.042 1.00 44.53 ATOM 174 CA ARG A1313 28.206 -7.169 0.402 1.00 44.08 ATOM 175 C ARG A1313 29.315 -6.868 1.454 1.00 45.11 ATOM 176 O ARG A1313 30.022 -5.852 1.366 1.00 42.63 ATOM 177 CB ARG A1313 26.836 -6.753 0.891 1.00 49.80 ATOM 178 CG ARG A1313 26.701 -5.343 1.467 1.00 50.31 ATOM 179 CD ARG A1313 25.300 -5.146 2.004 1.00 56.97 ATOM 180 NE ARG A1313 25.177 -3.858 2.659 1.00 61.73 ATOM 181 CZ ARG A1313 25.537 -3.587 3.934 1.00 67.65 ATOM 182 NH1 ARG A1313 26.060 -4.524 4.752 1.00 62.94 ATOM 183 NH2 ARG A1313 25.376 -2.360 4.418 1.00 56.49 ATOM 184 N THR A1314 29.401 -7.712 2.469 1.00 40.70 ATOM 185 CA THR A1314 30.441 -7.549 3.502 1.00 49.09 ATOM 186 C THR A1314 31.838 -7.464 2.904 1.00 46.75 ATOM 187 O THR A1314 32.531 -6.474 3.129 1.00 54.90 ATOM 188 CB THR A1314 30.341 -8.735 4.421 1.00 49.36 ATOM 189 OG1 THR A1314 29.046 -8.697 4.917 1.00 46.82 ATOM 190 CG2 THR A1314 31.394 -8.772 5.646 1.00 43.14 ATOM 191 N GLU A1315 32.191 -8.449 2.068 1.00 40.54 ATOM 192 CA GLU A1315 33.548 -8.482 1.467 1.00 44.90 ATOM 193 C GLU A1315 33.746 -7.277 0.555 1.00 44.23 ATOM 194 O GLU A1315 34.821 -6.642 0.547 1.00 44.27 ATOM 195 CB GLU A1315 33.822 -9.799 0.743 1.00 46.63 ATOM 196 CG GLU A1315 33.777 -10.982 1.699 1.00 44.07 ATOM 197 CD GLU A1315 34.810 -12.060 1.405 1.00 51.14 ATOM 198 OE1 GLU A1315 35.866 -12.125 2.111 1.00 48.21 ATOM 199 OE2 GLU A1315 34.572 -12.816 0.458 1.00 38.43 ATOM 200 N HIS A1316 32.684 -6.909 -0.157 1.00 41.20 ATOM 201 CA HIS A1316 32.770 -5.802 -1.082 1.00 45.27 ATOM 202 C HIS A1316 33.150 -4.471 -0.442 1.00 42.43 ATOM 203 O HIS A1316 33.821 -3.664 -1.042 1.00 44.09 ATOM 204 CB HIS A1316 31.459 -5.655 -1.883 1.00 45.23 ATOM 205 CG HIS A1316 31.300 -4.314 -2.540 1.00 48.31 ATOM 206 ND1 HIS A1316 31.870 -3.992 -3.758 1.00 45.75 ATOM 207 CD2 HIS A1316 30.676 -3.194 -2.113 1.00 49.20 ATOM 208 CE1 HIS A1316 31.538 -2.759 -4.080 1.00 42.08 ATOM 209 NE2 HIS A1316 30.819 -2.258 -3.098 1.00 50.38 ATOM 210 N ILE A1317 32.728 -4.234 0.776 1.00 47.90 ATOM 211 CA ILE A1317 32.984 -2.901 1.395 1.00 49.71 ATOM 212 C ILE A1317 34.493 -2.705 1.545 1.00 48.85 ATOM 213 O ILE A1317 34.933 -1.575 1.511 1.00 53.37 ATOM 214 CB ILE A1317 32.236 -2.748 2.748 1.00 43.80 ATOM 215 CG1 ILE A1317 30.701 -2.637 2.539 1.00 55.72 ATOM 216 CG2 ILE A1317 32.733 -1.542 3.563 1.00 46.57 ATOM 217 CD1 ILE A1317 29.874 -3.178 3.738 1.00 57.28 ATOM 218 N ARG A1318 35.247 -3.806 1.671 1.00 46.84 ATOM 219 CA ARG A1318 36.705 -3.788 1.774 1.00 50.02 ATOM 220 C ARG A1318 37.368 -3.308 0.532 1.00 48.68 ATOM 221 O ARG A1318 38.492 -2.748 0.590 1.00 49.41 ATOM 222 CB ARG A1318 37.301 -5.146 2.194 1.00 50.01 ATOM 223 CG ARG A1318 36.687 -5.704 3.494 1.00 45.32 ATOM 224 CD ARG A1318 37.252 -7.045 3.836 1.00 49.25 ATOM 225 NE ARG A1318 36.367 -7.917 4.630 1.00 44.88 ATOM 226 CZ ARG A1318 36.113 -9.197 4.393 1.00 48.78 ATOM 227 NH1 ARG A1318 36.640 -9.848 3.335 1.00 47.21 ATOM 228 NH2 ARG A1318 35.339 -9.905 5.257 1.00 55.27 ATOM 229 N VAL A1319 36.693 -3.417 -0.603 1.00 48.51 ATOM 230 CA VAL A1319 37.296 -2.778 -1.742 1.00 48.90 ATOM 231 C VAL A1319 37.304 -1.267 -1.490 1.00 51.26 ATOM 232 O VAL A1319 38.208 -0.599 -1.924 1.00 52.57 ATOM 233 CB VAL A1319 36.808 -3.197 -3.158 1.00 54.61 ATOM 234 CG1 VAL A1319 36.284 -4.631 -3.201 1.00 57.30 ATOM 235 CG2 VAL A1319 35.826 -2.261 -3.780 1.00 62.35 ATOM 236 N HIS A1320 36.324 -0.734 -0.779 1.00 49.56 ATOM 237 CA HIS A1320 36.300 0.706 -0.514 1.00 50.49 ATOM 238 C HIS A1320 37.285 1.044 0.563 1.00 53.90 ATOM 239 O HIS A1320 38.005 1.947 0.411 1.00 53.27 ATOM 240 CB HIS A1320 34.925 1.177 -0.151 1.00 52.08 ATOM 241 CG HIS A1320 33.938 1.078 -1.277 1.00 52.68 ATOM 242 ND1 HIS A1320 34.081 1.800 -2.436 1.00 62.16 ATOM 243 CD2 HIS A1320 32.758 0.403 -1.402 1.00 52.11 ATOM 244 CE1 HIS A1320 33.050 1.574 -3.236 1.00 52.58 ATOM 245 NE2 HIS A1320 32.231 0.735 -2.629 1.00 51.64 ATOM 246 N THR A1321 37.393 0.265 1.624 1.00 57.54 ATOM 247 CA THR A1321 38.295 0.638 2.731 1.00 56.77 ATOM 248 C THR A1321 39.765 0.273 2.544 1.00 53.74 ATOM 249 O THR A1321 40.611 0.874 3.156 1.00 55.84 ATOM 250 CB THR A1321 37.825 -0.009 4.043 1.00 51.68 ATOM 251 OG1 THR A1321 37.900 -1.435 3.926 1.00 52.40 ATOM 252 CG2 THR A1321 36.418 0.351 4.308 1.00 49.21 ATOM 253 N GLY A1322 40.066 -0.732 1.740 1.00 48.06 ATOM 254 CA GLY A1322 41.434 -1.203 1.610 1.00 49.62 ATOM 255 C GLY A1322 41.771 -2.212 2.680 1.00 51.72 ATOM 256 O GLY A1322 42.853 -2.729 2.697 1.00 60.96 ATOM 257 ZN ZN A1403 30.462 -0.257 -2.945 1.00 53.11 ATOM 258 MG MG A1404 25.695 3.676 -1.740 1.00 54.57 TER