HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNM TITLE REF6 ZnF2-4-NAC004-mC3 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.05 ANGSTORMS DBREF 6JNM A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 28 ARG ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN PHE SEQRES 2 A 28 PHE SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL HIS SEQRES 3 A 28 SER ASP ATOM 1 N ARG A1265 8.596 103.957 1.539 1.00 74.90 ATOM 2 CA ARG A1265 9.296 105.028 0.781 1.00 72.64 ATOM 3 C ARG A1265 10.516 105.408 1.652 1.00 69.04 ATOM 4 O ARG A1265 10.598 106.500 2.260 1.00 62.71 ATOM 5 CB ARG A1265 8.318 106.166 0.534 1.00 78.62 ATOM 6 CG ARG A1265 8.733 107.356 -0.312 1.00 85.55 ATOM 7 CD ARG A1265 7.771 108.515 -0.008 1.00 93.64 ATOM 8 NE ARG A1265 7.808 108.893 1.424 1.00102.13 ATOM 9 CZ ARG A1265 7.018 108.426 2.412 1.00 99.71 ATOM 10 NH1 ARG A1265 7.203 108.853 3.659 1.00 92.64 ATOM 11 NH2 ARG A1265 6.051 107.533 2.195 1.00104.25 ATOM 12 N ASN A1266 11.392 104.402 1.765 1.00 55.72 ATOM 13 CA ASN A1266 12.847 104.504 2.024 1.00 51.05 ATOM 14 C ASN A1266 13.240 105.055 3.377 1.00 48.32 ATOM 15 O ASN A1266 13.926 106.086 3.507 1.00 47.00 ATOM 16 CB ASN A1266 13.552 105.251 0.895 1.00 48.40 ATOM 17 CG ASN A1266 13.103 104.783 -0.457 1.00 49.53 ATOM 18 OD1 ASN A1266 13.406 103.653 -0.878 1.00 46.20 ATOM 19 ND2 ASN A1266 12.371 105.651 -1.154 1.00 46.83 ATOM 20 N ILE A1267 12.856 104.300 4.383 1.00 46.59 ATOM 21 CA ILE A1267 12.949 104.728 5.759 1.00 45.70 ATOM 22 C ILE A1267 14.152 104.053 6.315 1.00 43.60 ATOM 23 O ILE A1267 14.350 102.841 6.064 1.00 37.12 ATOM 24 CB ILE A1267 11.761 104.274 6.600 1.00 48.53 ATOM 25 CG1 ILE A1267 10.443 104.612 5.864 1.00 55.64 ATOM 26 CG2 ILE A1267 11.893 104.857 8.011 1.00 46.41 ATOM 27 CD1 ILE A1267 9.909 103.526 4.901 1.00 60.61 ATOM 28 N CYS A1268 14.951 104.819 7.072 1.00 40.55 ATOM 29 CA CYS A1268 16.192 104.276 7.584 1.00 39.02 ATOM 30 C CYS A1268 15.820 103.604 8.856 1.00 35.63 ATOM 31 O CYS A1268 15.116 104.185 9.660 1.00 32.59 ATOM 32 CB CYS A1268 17.265 105.338 7.738 1.00 36.54 ATOM 33 SG CYS A1268 18.657 105.161 8.850 1.00 40.91 ATOM 34 N PRO A1269 16.259 102.361 9.003 1.00 36.01 ATOM 35 CA PRO A1269 15.839 101.589 10.175 1.00 40.51 ATOM 36 C PRO A1269 16.685 101.854 11.369 1.00 41.04 ATOM 37 O PRO A1269 16.294 101.461 12.466 1.00 38.72 ATOM 38 CB PRO A1269 16.029 100.119 9.728 1.00 39.07 ATOM 39 CG PRO A1269 17.116 100.166 8.690 1.00 37.84 ATOM 40 CD PRO A1269 17.029 101.542 8.038 1.00 37.43 ATOM 41 N ILE A1270 17.847 102.477 11.202 1.00 37.45 ATOM 42 CA ILE A1270 18.744 102.612 12.347 1.00 32.77 ATOM 43 C ILE A1270 18.070 103.369 13.550 1.00 33.07 ATOM 44 O ILE A1270 17.271 104.321 13.408 1.00 31.89 ATOM 45 CB ILE A1270 20.135 103.121 11.907 1.00 34.43 ATOM 46 CG1 ILE A1270 21.019 101.961 11.400 1.00 38.49 ATOM 47 CG2 ILE A1270 20.910 103.699 13.085 1.00 33.46 ATOM 48 CD1 ILE A1270 20.506 101.197 10.239 1.00 43.45 ATOM 49 N LYS A1271 18.407 102.916 14.753 1.00 38.97 ATOM 50 CA LYS A1271 17.790 103.403 15.999 1.00 40.92 ATOM 51 C LYS A1271 18.106 104.877 16.124 1.00 41.73 ATOM 52 O LYS A1271 19.262 105.239 15.985 1.00 41.48 ATOM 53 CB LYS A1271 18.344 102.615 17.209 1.00 49.35 ATOM 54 CG LYS A1271 17.485 102.614 18.482 1.00 58.21 ATOM 55 CD LYS A1271 17.769 103.794 19.427 1.00 64.65 ATOM 56 CE LYS A1271 16.528 104.202 20.239 1.00 64.65 ATOM 57 NZ LYS A1271 16.130 103.138 21.213 1.00 62.44 ATOM 58 N GLY A1272 17.070 105.695 16.366 1.00 42.56 ATOM 59 CA GLY A1272 17.172 107.151 16.519 1.00 37.23 ATOM 60 C GLY A1272 17.466 107.943 15.242 1.00 37.28 ATOM 61 O GLY A1272 17.793 109.101 15.357 1.00 35.84 ATOM 62 N CYS A1273 17.354 107.356 14.036 1.00 37.31 ATOM 63 CA CYS A1273 17.466 108.103 12.780 1.00 35.81 ATOM 64 C CYS A1273 16.033 108.273 12.253 1.00 39.34 ATOM 65 O CYS A1273 15.487 109.394 12.203 1.00 41.85 ATOM 66 CB CYS A1273 18.440 107.342 11.782 1.00 38.88 ATOM 67 SG CYS A1273 18.563 107.465 9.918 1.00 47.72 ATOM 68 N GLY A1274 15.493 107.149 11.775 1.00 42.97 ATOM 69 CA GLY A1274 14.237 107.026 11.029 1.00 42.66 ATOM 70 C GLY A1274 13.984 108.103 10.013 1.00 48.54 ATOM 71 O GLY A1274 12.853 108.544 9.878 1.00 49.50 ATOM 72 N LYS A1275 15.022 108.571 9.314 1.00 42.32 ATOM 73 CA LYS A1275 14.792 109.524 8.246 1.00 42.55 ATOM 74 C LYS A1275 14.175 108.770 7.050 1.00 38.60 ATOM 75 O LYS A1275 14.354 107.543 6.929 1.00 36.10 ATOM 76 CB LYS A1275 16.107 110.154 7.855 1.00 46.15 ATOM 77 CG LYS A1275 16.729 110.982 8.953 1.00 47.08 ATOM 78 CD LYS A1275 16.615 112.474 8.635 1.00 58.27 ATOM 79 CE LYS A1275 17.981 113.142 8.535 1.00 55.29 ATOM 80 NZ LYS A1275 18.748 112.792 9.767 1.00 53.63 ATOM 81 N ASN A1276 13.499 109.482 6.160 1.00 36.01 ATOM 82 CA ASN A1276 12.925 108.841 4.975 1.00 42.00 ATOM 83 C ASN A1276 13.607 109.565 3.810 1.00 36.11 ATOM 84 O ASN A1276 13.915 110.729 3.918 1.00 37.70 ATOM 85 CB ASN A1276 11.359 108.923 4.946 1.00 44.01 ATOM 86 CG ASN A1276 10.814 109.780 3.775 1.00 54.95 ATOM 87 OD1 ASN A1276 10.716 109.318 2.610 1.00 70.40 ATOM 88 ND2 ASN A1276 10.463 111.032 4.073 1.00 54.25 ATOM 89 N PHE A1277 13.809 108.888 2.692 1.00 35.19 ATOM 90 CA PHE A1277 14.599 109.449 1.602 1.00 36.95 ATOM 91 C PHE A1277 13.838 109.370 0.310 1.00 41.71 ATOM 92 O PHE A1277 12.894 108.579 0.148 1.00 47.79 ATOM 93 CB PHE A1277 15.973 108.779 1.497 1.00 34.58 ATOM 94 CG PHE A1277 16.772 108.917 2.760 1.00 32.05 ATOM 95 CD1 PHE A1277 17.409 110.129 3.060 1.00 31.07 ATOM 96 CD2 PHE A1277 16.812 107.899 3.676 1.00 29.76 ATOM 97 CE1 PHE A1277 18.123 110.277 4.229 1.00 30.52 ATOM 98 CE2 PHE A1277 17.471 108.048 4.877 1.00 32.91 ATOM 99 CZ PHE A1277 18.145 109.231 5.153 1.00 33.07 ATOM 100 N PHE A1278 14.283 110.200 -0.610 1.00 42.65 ATOM 101 CA PHE A1278 13.691 110.286 -1.913 1.00 45.78 ATOM 102 C PHE A1278 13.835 108.992 -2.710 1.00 42.54 ATOM 103 O PHE A1278 13.111 108.783 -3.657 1.00 48.81 ATOM 104 CB PHE A1278 14.283 111.529 -2.662 1.00 46.98 ATOM 105 CG PHE A1278 15.682 111.333 -3.267 1.00 47.08 ATOM 106 CD1 PHE A1278 16.858 111.497 -2.489 1.00 48.92 ATOM 107 CD2 PHE A1278 15.837 111.034 -4.654 1.00 45.27 ATOM 108 CE1 PHE A1278 18.126 111.320 -3.065 1.00 41.46 ATOM 109 CE2 PHE A1278 17.114 110.847 -5.211 1.00 45.36 ATOM 110 CZ PHE A1278 18.261 110.988 -4.408 1.00 38.35 ATOM 111 N SER A1279 14.802 108.143 -2.361 1.00 40.02 ATOM 112 CA SER A1279 15.148 107.006 -3.179 1.00 33.07 ATOM 113 C SER A1279 15.769 105.930 -2.321 1.00 37.52 ATOM 114 O SER A1279 16.307 106.206 -1.247 1.00 37.81 ATOM 115 CB SER A1279 16.154 107.405 -4.270 1.00 32.46 ATOM 116 OG SER A1279 17.496 107.279 -3.794 1.00 31.18 ATOM 117 N HIS A1280 15.721 104.696 -2.822 1.00 33.89 ATOM 118 CA HIS A1280 16.259 103.562 -2.118 1.00 33.88 ATOM 119 C HIS A1280 17.766 103.625 -2.181 1.00 32.26 ATOM 120 O HIS A1280 18.460 103.301 -1.196 1.00 29.88 ATOM 121 CB HIS A1280 15.762 102.266 -2.812 1.00 41.29 ATOM 122 CG HIS A1280 15.917 101.031 -1.986 1.00 44.46 ATOM 123 ND1 HIS A1280 16.918 100.881 -1.051 1.00 45.77 ATOM 124 CD2 HIS A1280 15.200 99.882 -1.956 1.00 47.80 ATOM 125 CE1 HIS A1280 16.797 99.714 -0.455 1.00 46.81 ATOM 126 NE2 HIS A1280 15.766 99.084 -0.989 1.00 51.00 ATOM 127 N LYS A1281 18.281 103.979 -3.372 1.00 30.86 ATOM 128 CA LYS A1281 19.701 104.008 -3.616 1.00 32.60 ATOM 129 C LYS A1281 20.411 105.001 -2.646 1.00 31.03 ATOM 130 O LYS A1281 21.531 104.738 -2.179 1.00 31.07 ATOM 131 CB LYS A1281 19.989 104.395 -5.068 1.00 37.71 ATOM 132 CG LYS A1281 21.416 104.062 -5.442 1.00 44.87 ATOM 133 CD LYS A1281 21.976 104.986 -6.527 1.00 56.17 ATOM 134 CE LYS A1281 23.529 105.115 -6.453 1.00 57.81 ATOM 135 NZ LYS A1281 24.123 106.039 -7.485 1.00 53.37 ATOM 136 N TYR A1282 19.761 106.130 -2.351 1.00 29.02 ATOM 137 CA TYR A1282 20.315 107.099 -1.341 1.00 27.09 ATOM 138 C TYR A1282 20.216 106.564 0.091 1.00 26.09 ATOM 139 O TYR A1282 21.166 106.689 0.904 1.00 25.46 ATOM 140 CB TYR A1282 19.736 108.557 -1.477 1.00 25.46 ATOM 141 CG TYR A1282 20.555 109.419 -0.516 1.00 24.65 ATOM 142 CD1 TYR A1282 21.935 109.699 -0.769 1.00 26.80 ATOM 143 CD2 TYR A1282 20.037 109.797 0.711 1.00 23.58 ATOM 144 CE1 TYR A1282 22.709 110.366 0.174 1.00 25.98 ATOM 145 CE2 TYR A1282 20.813 110.451 1.630 1.00 21.16 ATOM 146 CZ TYR A1282 22.134 110.743 1.358 1.00 21.69 ATOM 147 OH TYR A1282 22.879 111.381 2.300 1.00 20.94 ATOM 148 N LEU A1283 19.093 105.895 0.385 1.00 27.11 ATOM 149 CA LEU A1283 18.969 105.192 1.631 1.00 26.36 ATOM 150 C LEU A1283 20.164 104.296 1.910 1.00 27.78 ATOM 151 O LEU A1283 20.662 104.290 3.051 1.00 26.72 ATOM 152 CB LEU A1283 17.639 104.437 1.772 1.00 31.28 ATOM 153 CG LEU A1283 17.572 103.446 2.998 1.00 34.77 ATOM 154 CD1 LEU A1283 17.595 104.154 4.367 1.00 34.65 ATOM 155 CD2 LEU A1283 16.331 102.536 2.859 1.00 38.97 ATOM 156 N VAL A1284 20.655 103.567 0.901 1.00 25.89 ATOM 157 CA VAL A1284 21.853 102.785 1.123 1.00 27.64 ATOM 158 C VAL A1284 23.104 103.643 1.298 1.00 28.02 ATOM 159 O VAL A1284 23.838 103.453 2.256 1.00 28.54 ATOM 160 CB VAL A1284 22.059 101.645 0.049 1.00 33.92 ATOM 161 CG1 VAL A1284 21.976 102.124 -1.363 1.00 42.66 ATOM 162 CG2 VAL A1284 23.422 100.981 0.148 1.00 34.17 ATOM 163 N GLN A1285 23.358 104.603 0.403 1.00 30.01 ATOM 164 CA GLN A1285 24.524 105.552 0.594 1.00 29.01 ATOM 165 C GLN A1285 24.501 106.306 1.937 1.00 23.24 ATOM 166 O GLN A1285 25.468 106.434 2.603 1.00 23.31 ATOM 167 CB GLN A1285 24.550 106.540 -0.550 1.00 33.80 ATOM 168 CG GLN A1285 24.836 105.900 -1.902 1.00 34.19 ATOM 169 CD GLN A1285 24.542 106.849 -3.024 1.00 41.58 ATOM 170 OE1 GLN A1285 25.464 107.285 -3.709 1.00 49.98 ATOM 171 NE2 GLN A1285 23.274 107.256 -3.166 1.00 42.09 ATOM 172 N HIS A1286 23.322 106.682 2.364 1.00 23.85 ATOM 173 CA HIS A1286 23.112 107.283 3.693 1.00 23.25 ATOM 174 C HIS A1286 23.648 106.513 4.874 1.00 23.11 ATOM 175 O HIS A1286 24.079 107.113 5.888 1.00 20.56 ATOM 176 CB HIS A1286 21.644 107.571 3.853 1.00 23.04 ATOM 177 CG HIS A1286 21.224 107.793 5.263 1.00 26.27 ATOM 178 ND1 HIS A1286 21.217 109.045 5.866 1.00 23.31 ATOM 179 CD2 HIS A1286 20.798 106.909 6.203 1.00 26.58 ATOM 180 CE1 HIS A1286 20.756 108.923 7.102 1.00 24.06 ATOM 181 NE2 HIS A1286 20.486 107.641 7.324 1.00 25.21 ATOM 182 N GLN A1287 23.654 105.178 4.765 1.00 23.01 ATOM 183 CA GLN A1287 24.176 104.328 5.824 1.00 21.02 ATOM 184 C GLN A1287 25.593 104.633 6.196 1.00 21.55 ATOM 185 O GLN A1287 25.972 104.398 7.342 1.00 22.34 ATOM 186 CB GLN A1287 24.035 102.804 5.478 1.00 24.00 ATOM 187 CG GLN A1287 22.606 102.372 5.193 1.00 24.63 ATOM 188 CD GLN A1287 21.668 102.706 6.327 1.00 25.15 ATOM 189 OE1 GLN A1287 20.534 103.182 6.107 1.00 26.42 ATOM 190 NE2 GLN A1287 22.133 102.468 7.548 1.00 23.69 ATOM 191 N ARG A1288 26.388 105.288 5.335 1.00 21.60 ATOM 192 CA ARG A1288 27.759 105.633 5.728 1.00 19.42 ATOM 193 C ARG A1288 27.778 106.644 6.890 1.00 21.84 ATOM 194 O ARG A1288 28.777 106.761 7.671 1.00 22.32 ATOM 195 CB ARG A1288 28.517 106.153 4.534 1.00 19.61 ATOM 196 CG ARG A1288 28.233 107.660 4.260 1.00 19.12 ATOM 197 CD ARG A1288 28.878 108.058 2.983 1.00 20.27 ATOM 198 NE ARG A1288 28.245 107.424 1.859 1.00 21.71 ATOM 199 CZ ARG A1288 28.717 107.429 0.638 1.00 23.20 ATOM 200 NH1 ARG A1288 29.784 108.146 0.352 1.00 24.27 ATOM 201 NH2 ARG A1288 28.030 106.837 -0.319 1.00 26.03 ATOM 202 N VAL A1289 26.682 107.377 7.045 1.00 19.82 ATOM 203 CA VAL A1289 26.613 108.271 8.188 1.00 24.55 ATOM 204 C VAL A1289 26.604 107.443 9.486 1.00 28.64 ATOM 205 O VAL A1289 27.036 107.896 10.504 1.00 26.34 ATOM 206 CB VAL A1289 25.337 109.126 8.125 1.00 27.08 ATOM 207 CG1 VAL A1289 24.952 109.639 9.486 1.00 35.84 ATOM 208 CG2 VAL A1289 25.428 110.247 7.098 1.00 25.63 ATOM 209 N HIS A1290 26.038 106.246 9.469 1.00 29.35 ATOM 210 CA HIS A1290 25.961 105.441 10.712 1.00 31.65 ATOM 211 C HIS A1290 27.200 104.520 10.926 1.00 34.26 ATOM 212 O HIS A1290 27.176 103.713 11.812 1.00 35.55 ATOM 213 CB HIS A1290 24.665 104.599 10.678 1.00 27.79 ATOM 214 CG HIS A1290 23.405 105.406 10.571 1.00 23.55 ATOM 215 ND1 HIS A1290 23.070 106.366 11.501 1.00 21.05 ATOM 216 CD2 HIS A1290 22.363 105.357 9.676 1.00 23.02 ATOM 217 CE1 HIS A1290 21.896 106.899 11.159 1.00 21.78 ATOM 218 NE2 HIS A1290 21.427 106.274 10.087 1.00 18.75 ATOM 219 N SER A1291 28.235 104.604 10.081 1.00 33.67 ATOM 220 CA SER A1291 29.516 103.918 10.311 1.00 33.47 ATOM 221 C SER A1291 30.690 104.931 10.519 1.00 33.87 ATOM 222 O SER A1291 30.633 106.030 10.048 1.00 29.62 ATOM 223 CB SER A1291 29.811 102.981 9.127 1.00 31.82 ATOM 224 OG SER A1291 31.199 102.899 8.956 1.00 34.69 ATOM 225 N ASP A1292 31.769 104.525 11.183 1.00 34.92 ATOM 226 CA ASP A1292 32.945 105.375 11.424 1.00 36.61 ATOM 227 C ASP A1292 34.091 105.287 10.394 1.00 30.70 ATOM 228 O ASP A1292 35.130 105.907 10.543 1.00 35.18 ATOM 229 CB ASP A1292 33.523 105.047 12.780 1.00 41.12 ATOM 230 CG ASP A1292 32.591 105.351 13.872 1.00 46.87 ATOM 231 OD1 ASP A1292 31.674 106.178 13.727 1.00 50.91 ATOM 232 OD2 ASP A1292 32.774 104.738 14.912 1.00 58.93 ATOM 233 ZN ZN A1401 19.961 106.671 9.039 1.00 31.37 TER