HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNM TITLE REF6 ZnF2-4-NAC004-mC3 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.05 ANGSTORMS DBREF 6JNM A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 31 ALA ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN SEQRES 2 A 31 THR PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG SEQRES 3 A 31 LYS THR GLY HIS SER ATOM 1 N ALA A1323 41.663 129.008 -2.920 1.00 19.45 ATOM 2 CA ALA A1323 40.746 129.425 -3.968 1.00 20.98 ATOM 3 C ALA A1323 39.372 129.992 -3.490 1.00 20.14 ATOM 4 O ALA A1323 38.888 129.664 -2.414 1.00 19.37 ATOM 5 CB ALA A1323 40.510 128.240 -4.871 1.00 19.87 ATOM 6 N ARG A1324 38.777 130.844 -4.302 1.00 21.57 ATOM 7 CA ARG A1324 37.480 131.366 -4.071 1.00 24.51 ATOM 8 C ARG A1324 36.703 131.244 -5.371 1.00 25.64 ATOM 9 O ARG A1324 36.426 132.219 -6.041 1.00 25.67 ATOM 10 CB ARG A1324 37.541 132.807 -3.528 1.00 28.47 ATOM 11 CG ARG A1324 38.281 132.920 -2.223 1.00 28.54 ATOM 12 CD ARG A1324 38.467 134.378 -1.825 1.00 33.11 ATOM 13 NE ARG A1324 37.247 134.770 -1.214 1.00 32.68 ATOM 14 CZ ARG A1324 36.949 134.571 0.064 1.00 36.99 ATOM 15 NH1 ARG A1324 35.752 134.958 0.510 1.00 40.72 ATOM 16 NH2 ARG A1324 37.828 134.040 0.917 1.00 36.37 ATOM 17 N PRO A1325 36.307 130.001 -5.722 1.00 24.04 ATOM 18 CA PRO A1325 35.791 129.851 -7.079 1.00 21.66 ATOM 19 C PRO A1325 34.371 130.382 -7.272 1.00 21.43 ATOM 20 O PRO A1325 33.933 130.454 -8.373 1.00 25.05 ATOM 21 CB PRO A1325 35.866 128.348 -7.309 1.00 21.22 ATOM 22 CG PRO A1325 35.677 127.739 -5.931 1.00 23.87 ATOM 23 CD PRO A1325 36.362 128.733 -4.978 1.00 21.54 ATOM 24 N TYR A1326 33.633 130.738 -6.251 1.00 18.74 ATOM 25 CA TYR A1326 32.278 131.207 -6.463 1.00 20.58 ATOM 26 C TYR A1326 32.316 132.713 -6.604 1.00 24.08 ATOM 27 O TYR A1326 32.640 133.413 -5.649 1.00 23.79 ATOM 28 CB TYR A1326 31.402 130.800 -5.269 1.00 22.15 ATOM 29 CG TYR A1326 31.342 129.250 -5.156 1.00 22.88 ATOM 30 CD1 TYR A1326 30.483 128.516 -6.012 1.00 22.86 ATOM 31 CD2 TYR A1326 32.209 128.540 -4.312 1.00 20.52 ATOM 32 CE1 TYR A1326 30.473 127.123 -6.001 1.00 22.32 ATOM 33 CE2 TYR A1326 32.153 127.158 -4.207 1.00 20.47 ATOM 34 CZ TYR A1326 31.280 126.460 -5.056 1.00 22.48 ATOM 35 OH TYR A1326 31.238 125.145 -5.061 1.00 21.49 ATOM 36 N VAL A1327 31.992 133.202 -7.802 1.00 28.84 ATOM 37 CA VAL A1327 32.160 134.620 -8.186 1.00 27.44 ATOM 38 C VAL A1327 30.813 135.165 -8.518 1.00 26.56 ATOM 39 O VAL A1327 30.278 134.733 -9.522 1.00 31.17 ATOM 40 CB VAL A1327 33.004 134.745 -9.450 1.00 30.20 ATOM 41 CG1 VAL A1327 33.113 136.246 -9.856 1.00 33.85 ATOM 42 CG2 VAL A1327 34.390 134.173 -9.202 1.00 30.29 ATOM 43 N CYS A1328 30.214 136.007 -7.662 1.00 24.78 ATOM 44 CA CYS A1328 28.875 136.654 -7.941 1.00 28.24 ATOM 45 C CYS A1328 28.910 137.403 -9.273 1.00 28.37 ATOM 46 O CYS A1328 29.887 138.125 -9.555 1.00 23.51 ATOM 47 CB CYS A1328 28.584 137.671 -6.862 1.00 31.71 ATOM 48 SG CYS A1328 27.005 138.568 -6.770 1.00 34.47 ATOM 49 N ALA A1329 27.926 137.131 -10.119 1.00 28.30 ATOM 50 CA ALA A1329 27.841 137.733 -11.435 1.00 33.63 ATOM 51 C ALA A1329 27.001 139.012 -11.449 1.00 32.53 ATOM 52 O ALA A1329 27.033 139.680 -12.449 1.00 35.24 ATOM 53 CB ALA A1329 27.314 136.737 -12.493 1.00 33.13 ATOM 54 N GLU A1330 26.264 139.327 -10.386 1.00 33.53 ATOM 55 CA GLU A1330 25.429 140.544 -10.329 1.00 39.57 ATOM 56 C GLU A1330 26.250 141.773 -10.719 1.00 37.93 ATOM 57 O GLU A1330 27.321 141.979 -10.167 1.00 32.42 ATOM 58 CB GLU A1330 24.866 140.787 -8.924 1.00 42.01 ATOM 59 CG GLU A1330 23.903 141.991 -8.844 1.00 46.36 ATOM 60 CD GLU A1330 22.563 141.679 -9.485 1.00 51.89 ATOM 61 OE1 GLU A1330 22.235 140.459 -9.643 1.00 46.30 ATOM 62 OE2 GLU A1330 21.848 142.657 -9.826 1.00 56.93 ATOM 63 N PRO A1331 25.757 142.587 -11.682 1.00 39.53 ATOM 64 CA PRO A1331 26.542 143.769 -12.045 1.00 37.12 ATOM 65 C PRO A1331 27.013 144.588 -10.818 1.00 30.50 ATOM 66 O PRO A1331 26.192 144.872 -9.902 1.00 29.34 ATOM 67 CB PRO A1331 25.576 144.544 -12.950 1.00 40.97 ATOM 68 CG PRO A1331 24.815 143.444 -13.677 1.00 39.15 ATOM 69 CD PRO A1331 24.641 142.342 -12.640 1.00 39.47 ATOM 70 N ASP A1332 28.344 144.838 -10.793 1.00 29.33 ATOM 71 CA ASP A1332 29.063 145.578 -9.717 1.00 34.38 ATOM 72 C ASP A1332 29.098 144.975 -8.269 1.00 36.60 ATOM 73 O ASP A1332 29.447 145.685 -7.310 1.00 34.45 ATOM 74 CB ASP A1332 28.565 147.052 -9.622 1.00 37.05 ATOM 75 CG ASP A1332 28.531 147.769 -10.991 1.00 38.38 ATOM 76 OD1 ASP A1332 29.580 147.817 -11.703 1.00 34.82 ATOM 77 OD2 ASP A1332 27.425 148.280 -11.331 1.00 45.25 ATOM 78 N CYS A1333 28.753 143.692 -8.096 1.00 37.63 ATOM 79 CA CYS A1333 28.726 143.051 -6.751 1.00 38.38 ATOM 80 C CYS A1333 30.181 142.772 -6.461 1.00 35.34 ATOM 81 O CYS A1333 30.722 143.325 -5.538 1.00 31.97 ATOM 82 CB CYS A1333 27.843 141.792 -6.797 1.00 42.94 ATOM 83 SG CYS A1333 27.919 140.459 -5.552 1.00 41.34 ATOM 84 N GLY A1334 30.809 141.991 -7.334 1.00 30.00 ATOM 85 CA GLY A1334 32.195 141.686 -7.230 1.00 34.02 ATOM 86 C GLY A1334 32.579 140.720 -6.096 1.00 34.49 ATOM 87 O GLY A1334 33.752 140.491 -5.880 1.00 33.86 ATOM 88 N GLN A1335 31.636 140.221 -5.331 1.00 30.29 ATOM 89 CA GLN A1335 32.027 139.389 -4.222 1.00 30.92 ATOM 90 C GLN A1335 32.408 137.973 -4.668 1.00 29.84 ATOM 91 O GLN A1335 31.900 137.422 -5.664 1.00 25.88 ATOM 92 CB GLN A1335 30.937 139.336 -3.202 1.00 31.51 ATOM 93 CG GLN A1335 30.798 140.667 -2.520 1.00 33.30 ATOM 94 CD GLN A1335 29.828 140.554 -1.419 1.00 37.55 ATOM 95 OE1 GLN A1335 28.985 141.403 -1.257 1.00 51.46 ATOM 96 NE2 GLN A1335 29.898 139.472 -0.662 1.00 41.36 ATOM 97 N THR A1336 33.339 137.392 -3.932 1.00 28.37 ATOM 98 CA THR A1336 33.689 136.009 -4.185 1.00 26.87 ATOM 99 C THR A1336 33.620 135.166 -2.911 1.00 26.68 ATOM 100 O THR A1336 33.692 135.704 -1.840 1.00 23.39 ATOM 101 CB THR A1336 35.065 135.906 -4.819 1.00 26.35 ATOM 102 OG1 THR A1336 36.056 136.158 -3.834 1.00 24.50 ATOM 103 CG2 THR A1336 35.177 136.867 -5.956 1.00 27.51 ATOM 104 N PHE A1337 33.509 133.827 -3.051 1.00 22.97 ATOM 105 CA PHE A1337 33.325 132.940 -1.910 1.00 20.73 ATOM 106 C PHE A1337 34.111 131.627 -2.094 1.00 20.23 ATOM 107 O PHE A1337 34.274 131.128 -3.215 1.00 20.20 ATOM 108 CB PHE A1337 31.838 132.650 -1.724 1.00 20.97 ATOM 109 CG PHE A1337 31.000 133.867 -1.682 1.00 22.68 ATOM 110 CD1 PHE A1337 30.540 134.446 -2.864 1.00 25.74 ATOM 111 CD2 PHE A1337 30.665 134.455 -0.429 1.00 23.28 ATOM 112 CE1 PHE A1337 29.758 135.597 -2.826 1.00 26.04 ATOM 113 CE2 PHE A1337 29.933 135.613 -0.396 1.00 23.63 ATOM 114 CZ PHE A1337 29.464 136.185 -1.598 1.00 24.48 ATOM 115 N ARG A1338 34.618 131.090 -0.990 1.00 17.84 ATOM 116 CA ARG A1338 35.355 129.858 -0.994 1.00 16.93 ATOM 117 C ARG A1338 34.403 128.673 -0.968 1.00 15.67 ATOM 118 O ARG A1338 34.743 127.648 -1.557 1.00 14.41 ATOM 119 CB ARG A1338 36.304 129.746 0.178 1.00 17.28 ATOM 120 CG ARG A1338 37.163 128.516 0.107 1.00 18.22 ATOM 121 CD ARG A1338 38.272 128.581 1.127 1.00 18.97 ATOM 122 NE ARG A1338 39.190 129.546 0.625 1.00 20.50 ATOM 123 CZ ARG A1338 39.687 130.558 1.310 1.00 24.02 ATOM 124 NH1 ARG A1338 40.462 131.383 0.665 1.00 25.61 ATOM 125 NH2 ARG A1338 39.472 130.719 2.623 1.00 26.74 ATOM 126 N PHE A1339 33.241 128.801 -0.325 1.00 14.22 ATOM 127 CA PHE A1339 32.399 127.641 -0.074 1.00 14.37 ATOM 128 C PHE A1339 31.018 127.838 -0.621 1.00 14.57 ATOM 129 O PHE A1339 30.479 128.964 -0.624 1.00 14.59 ATOM 130 CB PHE A1339 32.309 127.335 1.394 1.00 15.12 ATOM 131 CG PHE A1339 33.644 127.115 2.029 1.00 15.05 ATOM 132 CD1 PHE A1339 34.319 125.933 1.794 1.00 15.23 ATOM 133 CD2 PHE A1339 34.215 128.072 2.821 1.00 15.00 ATOM 134 CE1 PHE A1339 35.559 125.712 2.322 1.00 15.30 ATOM 135 CE2 PHE A1339 35.457 127.855 3.378 1.00 16.06 ATOM 136 CZ PHE A1339 36.120 126.635 3.162 1.00 15.97 ATOM 137 N VAL A1340 30.483 126.777 -1.176 1.00 14.17 ATOM 138 CA VAL A1340 29.228 126.886 -1.883 1.00 14.61 ATOM 139 C VAL A1340 28.077 127.404 -1.029 1.00 15.82 ATOM 140 O VAL A1340 27.224 128.221 -1.489 1.00 16.31 ATOM 141 CB VAL A1340 28.836 125.596 -2.602 1.00 15.68 ATOM 142 CG1 VAL A1340 28.456 124.456 -1.706 1.00 15.56 ATOM 143 CG2 VAL A1340 27.677 125.889 -3.543 1.00 17.06 ATOM 144 N SER A1341 28.029 126.953 0.205 1.00 16.42 ATOM 145 CA SER A1341 26.977 127.377 1.110 1.00 17.52 ATOM 146 C SER A1341 27.023 128.912 1.342 1.00 19.40 ATOM 147 O SER A1341 25.991 129.513 1.536 1.00 17.27 ATOM 148 CB SER A1341 27.151 126.765 2.490 1.00 17.53 ATOM 149 OG SER A1341 26.028 127.125 3.306 1.00 15.15 ATOM 150 N ASP A1342 28.224 129.480 1.355 1.00 19.12 ATOM 151 CA ASP A1342 28.354 130.906 1.616 1.00 22.49 ATOM 152 C ASP A1342 27.879 131.711 0.389 1.00 23.02 ATOM 153 O ASP A1342 27.352 132.842 0.549 1.00 23.62 ATOM 154 CB ASP A1342 29.810 131.298 1.936 1.00 20.67 ATOM 155 CG ASP A1342 30.358 130.630 3.228 1.00 20.21 ATOM 156 OD1 ASP A1342 29.569 130.385 4.185 1.00 19.72 ATOM 157 OD2 ASP A1342 31.592 130.392 3.251 1.00 19.70 ATOM 158 N PHE A1343 28.130 131.174 -0.794 1.00 19.46 ATOM 159 CA PHE A1343 27.669 131.794 -2.031 1.00 23.03 ATOM 160 C PHE A1343 26.150 131.693 -2.093 1.00 26.12 ATOM 161 O PHE A1343 25.491 132.684 -2.396 1.00 25.95 ATOM 162 CB PHE A1343 28.274 131.124 -3.266 1.00 22.88 ATOM 163 CG PHE A1343 27.868 131.720 -4.568 1.00 24.10 ATOM 164 CD1 PHE A1343 27.671 133.120 -4.716 1.00 26.54 ATOM 165 CD2 PHE A1343 27.716 130.911 -5.688 1.00 25.45 ATOM 166 CE1 PHE A1343 27.282 133.667 -5.947 1.00 26.82 ATOM 167 CE2 PHE A1343 27.357 131.445 -6.941 1.00 28.68 ATOM 168 CZ PHE A1343 27.144 132.850 -7.077 1.00 28.44 ATOM 169 N SER A1344 25.599 130.513 -1.794 1.00 24.99 ATOM 170 CA SER A1344 24.137 130.373 -1.651 1.00 25.13 ATOM 171 C SER A1344 23.533 131.381 -0.645 1.00 27.97 ATOM 172 O SER A1344 22.460 131.938 -0.883 1.00 25.80 ATOM 173 CB SER A1344 23.690 128.987 -1.219 1.00 24.18 ATOM 174 OG SER A1344 24.136 128.002 -2.099 1.00 26.25 ATOM 175 N ARG A1345 24.204 131.601 0.466 1.00 26.39 ATOM 176 CA ARG A1345 23.715 132.531 1.445 1.00 29.01 ATOM 177 C ARG A1345 23.642 133.969 0.895 1.00 29.64 ATOM 178 O ARG A1345 22.672 134.692 1.165 1.00 30.20 ATOM 179 CB ARG A1345 24.575 132.521 2.677 1.00 28.74 ATOM 180 CG ARG A1345 24.055 133.417 3.775 1.00 33.49 ATOM 181 CD ARG A1345 24.914 133.368 5.055 1.00 38.41 ATOM 182 NE ARG A1345 25.340 132.040 5.559 1.00 41.32 ATOM 183 CZ ARG A1345 24.686 131.236 6.427 1.00 47.22 ATOM 184 NH1 ARG A1345 23.473 131.512 6.919 1.00 48.41 ATOM 185 NH2 ARG A1345 25.270 130.090 6.812 1.00 48.45 ATOM 186 N HIS A1346 24.692 134.373 0.212 1.00 29.25 ATOM 187 CA HIS A1346 24.768 135.647 -0.415 1.00 29.89 ATOM 188 C HIS A1346 23.630 135.828 -1.436 1.00 33.35 ATOM 189 O HIS A1346 22.952 136.855 -1.443 1.00 34.56 ATOM 190 CB HIS A1346 26.117 135.828 -1.084 1.00 30.12 ATOM 191 CG HIS A1346 26.181 137.056 -1.938 1.00 33.54 ATOM 192 ND1 HIS A1346 26.316 138.328 -1.401 1.00 35.02 ATOM 193 CD2 HIS A1346 26.166 137.213 -3.281 1.00 30.93 ATOM 194 CE1 HIS A1346 26.346 139.217 -2.376 1.00 36.52 ATOM 195 NE2 HIS A1346 26.226 138.571 -3.523 1.00 37.91 ATOM 196 N LYS A1347 23.406 134.826 -2.257 1.00 31.30 ATOM 197 CA LYS A1347 22.319 134.856 -3.233 1.00 35.44 ATOM 198 C LYS A1347 20.992 135.031 -2.533 1.00 38.55 ATOM 199 O LYS A1347 20.217 135.882 -2.897 1.00 36.51 ATOM 200 CB LYS A1347 22.318 133.596 -4.103 1.00 35.12 ATOM 201 CG LYS A1347 23.387 133.705 -5.185 1.00 38.64 ATOM 202 CD LYS A1347 23.967 132.406 -5.677 1.00 45.34 ATOM 203 CE LYS A1347 22.958 131.270 -5.787 1.00 46.86 ATOM 204 NZ LYS A1347 23.461 130.222 -6.711 1.00 50.68 ATOM 205 N ARG A1348 20.763 134.269 -1.485 1.00 37.30 ATOM 206 CA ARG A1348 19.488 134.296 -0.806 1.00 44.11 ATOM 207 C ARG A1348 19.275 135.665 -0.155 1.00 47.03 ATOM 208 O ARG A1348 18.175 136.168 -0.166 1.00 45.80 ATOM 209 CB ARG A1348 19.438 133.160 0.219 1.00 44.83 ATOM 210 CG ARG A1348 18.089 132.796 0.804 1.00 49.38 ATOM 211 CD ARG A1348 18.137 131.500 1.642 1.00 47.35 ATOM 212 NE ARG A1348 19.138 131.502 2.768 1.00 49.96 ATOM 213 CZ ARG A1348 20.350 130.871 2.823 1.00 49.88 ATOM 214 NH1 ARG A1348 21.057 131.020 3.950 1.00 51.04 ATOM 215 NH2 ARG A1348 20.882 130.099 1.812 1.00 37.98 ATOM 216 N LYS A1349 20.331 136.279 0.363 1.00 44.90 ATOM 217 CA LYS A1349 20.188 137.507 1.127 1.00 44.24 ATOM 218 C LYS A1349 20.057 138.698 0.210 1.00 44.71 ATOM 219 O LYS A1349 19.307 139.593 0.500 1.00 45.38 ATOM 220 CB LYS A1349 21.366 137.745 2.055 1.00 46.81 ATOM 221 CG LYS A1349 20.972 138.236 3.438 1.00 58.12 ATOM 222 CD LYS A1349 21.985 137.808 4.486 1.00 62.85 ATOM 223 CE LYS A1349 21.771 136.342 4.872 1.00 67.39 ATOM 224 NZ LYS A1349 22.790 135.899 5.856 1.00 71.43 ATOM 225 N THR A1350 20.805 138.711 -0.878 1.00 39.70 ATOM 226 CA THR A1350 20.823 139.811 -1.761 1.00 34.99 ATOM 227 C THR A1350 19.880 139.711 -2.953 1.00 34.57 ATOM 228 O THR A1350 19.688 140.709 -3.585 1.00 37.37 ATOM 229 CB THR A1350 22.240 140.014 -2.368 1.00 35.65 ATOM 230 OG1 THR A1350 22.559 138.938 -3.271 1.00 31.87 ATOM 231 CG2 THR A1350 23.273 140.166 -1.294 1.00 37.13 ATOM 232 N GLY A1351 19.386 138.539 -3.332 1.00 33.51 ATOM 233 CA GLY A1351 18.734 138.326 -4.672 1.00 31.09 ATOM 234 C GLY A1351 19.665 138.275 -5.883 1.00 34.68 ATOM 235 O GLY A1351 19.208 138.147 -7.027 1.00 35.61 ATOM 236 N HIS A1352 20.989 138.308 -5.679 1.00 35.65 ATOM 237 CA HIS A1352 21.941 138.222 -6.836 1.00 32.59 ATOM 238 C HIS A1352 21.887 136.827 -7.518 1.00 38.05 ATOM 239 O HIS A1352 21.654 135.847 -6.847 1.00 34.43 ATOM 240 CB HIS A1352 23.312 138.653 -6.360 1.00 33.53 ATOM 241 CG HIS A1352 23.360 140.095 -5.883 1.00 42.03 ATOM 242 ND1 HIS A1352 24.533 140.814 -5.759 1.00 47.55 ATOM 243 CD2 HIS A1352 22.374 140.956 -5.510 1.00 40.78 ATOM 244 CE1 HIS A1352 24.288 142.019 -5.280 1.00 41.25 ATOM 245 NE2 HIS A1352 22.977 142.135 -5.140 1.00 45.98 ATOM 246 N SER A1353 22.019 136.767 -8.849 1.00 46.64 ATOM 247 CA SER A1353 21.595 135.622 -9.711 1.00 48.74 ATOM 248 C SER A1353 20.127 135.248 -9.553 1.00 48.25 ATOM 249 O SER A1353 19.640 134.407 -10.322 1.00 60.04 ATOM 250 CB SER A1353 22.500 134.398 -9.508 1.00 49.84 ATOM 251 OG SER A1353 23.806 134.865 -9.153 1.00 58.24 ATOM 252 ZN ZN A1403 26.395 139.488 -5.266 1.00 32.05 TER