HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNM TITLE REF6 ZnF2-4-NAC004-mC3 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.05 ANGSTORMS DBREF 6JNM A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 30 ASP ARG PRO LEU LYS CYS PRO TRP LYS GLY CYS LYS MET SEQRES 2 A 30 THR PHE LYS TRP ALA TRP SER ARG THR GLU HIS ILE ARG SEQRES 3 A 30 VAL HIS THR GLY ATOM 1 N ASP A1293 33.850 104.595 9.318 1.00 28.67 ATOM 2 CA ASP A1293 34.752 104.564 8.230 1.00 25.35 ATOM 3 C ASP A1293 34.731 105.913 7.534 1.00 25.20 ATOM 4 O ASP A1293 33.626 106.545 7.337 1.00 22.17 ATOM 5 CB ASP A1293 34.229 103.554 7.244 1.00 27.29 ATOM 6 CG ASP A1293 34.400 102.089 7.759 1.00 35.39 ATOM 7 OD1 ASP A1293 34.924 101.895 8.882 1.00 38.85 ATOM 8 OD2 ASP A1293 34.009 101.132 7.041 1.00 38.08 ATOM 9 N ARG A1294 35.922 106.309 7.127 1.00 25.08 ATOM 10 CA ARG A1294 36.165 107.611 6.473 1.00 24.63 ATOM 11 C ARG A1294 37.018 107.238 5.301 1.00 22.95 ATOM 12 O ARG A1294 38.223 107.414 5.343 1.00 21.11 ATOM 13 CB ARG A1294 36.852 108.568 7.437 1.00 24.20 ATOM 14 CG ARG A1294 36.017 108.827 8.688 1.00 26.02 ATOM 15 CD ARG A1294 36.585 109.922 9.602 1.00 26.04 ATOM 16 NE ARG A1294 36.424 111.242 8.956 1.00 26.85 ATOM 17 CZ ARG A1294 35.301 111.945 8.920 1.00 25.37 ATOM 18 NH1 ARG A1294 34.183 111.542 9.544 1.00 26.30 ATOM 19 NH2 ARG A1294 35.260 113.094 8.237 1.00 24.77 ATOM 20 N PRO A1295 36.393 106.717 4.239 1.00 23.88 ATOM 21 CA PRO A1295 37.199 106.144 3.142 1.00 27.74 ATOM 22 C PRO A1295 37.955 107.156 2.247 1.00 29.61 ATOM 23 O PRO A1295 38.776 106.716 1.445 1.00 28.71 ATOM 24 CB PRO A1295 36.144 105.361 2.292 1.00 24.85 ATOM 25 CG PRO A1295 35.011 105.134 3.248 1.00 27.93 ATOM 26 CD PRO A1295 34.967 106.408 4.048 1.00 26.91 ATOM 27 N LEU A1296 37.647 108.461 2.296 1.00 26.14 ATOM 28 CA LEU A1296 38.280 109.403 1.362 1.00 23.19 ATOM 29 C LEU A1296 39.329 110.168 2.097 1.00 23.57 ATOM 30 O LEU A1296 39.187 110.444 3.277 1.00 22.59 ATOM 31 CB LEU A1296 37.257 110.314 0.760 1.00 24.13 ATOM 32 CG LEU A1296 36.030 109.576 0.202 1.00 26.68 ATOM 33 CD1 LEU A1296 34.914 110.551 -0.155 1.00 27.67 ATOM 34 CD2 LEU A1296 36.331 108.671 -1.006 1.00 26.02 ATOM 35 N LYS A1297 40.394 110.503 1.388 1.00 22.78 ATOM 36 CA LYS A1297 41.584 111.075 1.979 1.00 27.16 ATOM 37 C LYS A1297 41.791 112.402 1.308 1.00 24.15 ATOM 38 O LYS A1297 41.431 112.560 0.163 1.00 21.04 ATOM 39 CB LYS A1297 42.779 110.198 1.682 1.00 33.98 ATOM 40 CG LYS A1297 42.927 109.049 2.654 1.00 46.39 ATOM 41 CD LYS A1297 44.041 109.362 3.688 1.00 64.34 ATOM 42 CE LYS A1297 43.836 108.751 5.083 1.00 67.27 ATOM 43 NZ LYS A1297 43.974 107.276 5.032 1.00 72.26 ATOM 44 N CYS A1298 42.386 113.333 2.027 1.00 21.47 ATOM 45 CA CYS A1298 42.751 114.613 1.450 1.00 21.47 ATOM 46 C CYS A1298 43.988 114.348 0.639 1.00 22.47 ATOM 47 O CYS A1298 44.901 113.715 1.185 1.00 19.48 ATOM 48 CB CYS A1298 43.146 115.614 2.530 1.00 19.06 ATOM 49 SG CYS A1298 43.627 117.238 1.856 1.00 16.50 ATOM 50 N PRO A1299 44.100 114.919 -0.584 1.00 20.73 ATOM 51 CA PRO A1299 45.332 114.672 -1.295 1.00 21.35 ATOM 52 C PRO A1299 46.486 115.619 -0.942 1.00 22.07 ATOM 53 O PRO A1299 47.507 115.520 -1.533 1.00 23.33 ATOM 54 CB PRO A1299 44.905 114.904 -2.742 1.00 22.43 ATOM 55 CG PRO A1299 43.933 116.070 -2.569 1.00 22.45 ATOM 56 CD PRO A1299 43.130 115.645 -1.411 1.00 21.26 ATOM 57 N TRP A1300 46.366 116.517 -0.007 1.00 20.27 ATOM 58 CA TRP A1300 47.387 117.514 0.201 1.00 21.89 ATOM 59 C TRP A1300 48.387 116.867 1.089 1.00 24.71 ATOM 60 O TRP A1300 48.039 116.251 2.105 1.00 22.96 ATOM 61 CB TRP A1300 46.853 118.707 0.990 1.00 20.65 ATOM 62 CG TRP A1300 47.677 119.935 0.917 1.00 21.46 ATOM 63 CD1 TRP A1300 48.599 120.428 1.868 1.00 22.33 ATOM 64 CD2 TRP A1300 47.648 120.897 -0.135 1.00 22.03 ATOM 65 NE1 TRP A1300 49.087 121.649 1.434 1.00 22.16 ATOM 66 CE2 TRP A1300 48.524 121.951 0.228 1.00 22.80 ATOM 67 CE3 TRP A1300 46.941 120.986 -1.327 1.00 21.83 ATOM 68 CZ2 TRP A1300 48.718 123.033 -0.571 1.00 24.00 ATOM 69 CZ3 TRP A1300 47.105 122.064 -2.102 1.00 22.87 ATOM 70 CH2 TRP A1300 48.007 123.071 -1.745 1.00 24.12 ATOM 71 N LYS A1301 49.636 117.076 0.762 1.00 25.39 ATOM 72 CA LYS A1301 50.690 116.351 1.439 1.00 27.26 ATOM 73 C LYS A1301 50.774 116.725 2.889 1.00 24.01 ATOM 74 O LYS A1301 50.931 117.910 3.190 1.00 23.29 ATOM 75 CB LYS A1301 52.015 116.687 0.747 1.00 31.80 ATOM 76 CG LYS A1301 53.267 116.381 1.530 1.00 33.90 ATOM 77 CD LYS A1301 53.621 114.945 1.409 1.00 37.57 ATOM 78 CE LYS A1301 55.149 114.813 1.618 1.00 40.18 ATOM 79 NZ LYS A1301 55.446 113.361 1.615 1.00 38.91 ATOM 80 N GLY A1302 50.804 115.716 3.748 1.00 23.07 ATOM 81 CA GLY A1302 50.780 115.933 5.192 1.00 25.54 ATOM 82 C GLY A1302 49.422 116.058 5.860 1.00 28.24 ATOM 83 O GLY A1302 49.342 116.004 7.060 1.00 29.97 ATOM 84 N CYS A1303 48.330 116.234 5.127 1.00 28.34 ATOM 85 CA CYS A1303 47.078 116.556 5.784 1.00 25.63 ATOM 86 C CYS A1303 46.448 115.241 6.167 1.00 25.60 ATOM 87 O CYS A1303 46.350 114.371 5.367 1.00 25.32 ATOM 88 CB CYS A1303 46.169 117.391 4.855 1.00 25.51 ATOM 89 SG CYS A1303 44.502 117.604 5.477 1.00 19.93 ATOM 90 N LYS A1304 45.941 115.129 7.377 1.00 26.48 ATOM 91 CA LYS A1304 45.325 113.875 7.819 1.00 30.30 ATOM 92 C LYS A1304 43.840 113.819 7.684 1.00 29.03 ATOM 93 O LYS A1304 43.248 112.802 8.053 1.00 28.27 ATOM 94 CB LYS A1304 45.609 113.611 9.327 1.00 37.68 ATOM 95 CG LYS A1304 47.074 113.679 9.749 1.00 43.61 ATOM 96 CD LYS A1304 47.844 112.494 9.198 1.00 48.52 ATOM 97 CE LYS A1304 49.038 112.902 8.368 1.00 52.67 ATOM 98 NZ LYS A1304 49.855 111.684 8.137 1.00 58.38 ATOM 99 N MET A1305 43.216 114.871 7.179 1.00 25.59 ATOM 100 CA MET A1305 41.752 114.884 7.104 1.00 24.25 ATOM 101 C MET A1305 41.261 113.748 6.222 1.00 20.94 ATOM 102 O MET A1305 41.852 113.411 5.175 1.00 21.86 ATOM 103 CB MET A1305 41.296 116.236 6.516 1.00 28.94 ATOM 104 CG MET A1305 39.790 116.496 6.576 1.00 33.60 ATOM 105 SD MET A1305 39.226 116.722 8.285 1.00 39.26 ATOM 106 CE MET A1305 40.677 117.520 9.073 1.00 39.95 ATOM 107 N THR A1306 40.162 113.157 6.618 1.00 18.57 ATOM 108 CA THR A1306 39.484 112.116 5.841 1.00 18.73 ATOM 109 C THR A1306 38.030 112.485 5.801 1.00 17.58 ATOM 110 O THR A1306 37.579 113.280 6.626 1.00 17.37 ATOM 111 CB THR A1306 39.634 110.731 6.510 1.00 20.99 ATOM 112 OG1 THR A1306 39.002 110.791 7.765 1.00 18.86 ATOM 113 CG2 THR A1306 41.137 110.388 6.753 1.00 20.86 ATOM 114 N PHE A1307 37.288 111.863 4.907 1.00 17.01 ATOM 115 CA PHE A1307 35.927 112.190 4.636 1.00 16.71 ATOM 116 C PHE A1307 35.095 110.949 4.370 1.00 19.86 ATOM 117 O PHE A1307 35.606 109.858 3.992 1.00 17.09 ATOM 118 CB PHE A1307 35.846 113.024 3.372 1.00 17.25 ATOM 119 CG PHE A1307 36.856 114.124 3.348 1.00 18.30 ATOM 120 CD1 PHE A1307 38.155 113.868 2.857 1.00 18.74 ATOM 121 CD2 PHE A1307 36.562 115.365 3.914 1.00 18.12 ATOM 122 CE1 PHE A1307 39.096 114.878 2.920 1.00 19.87 ATOM 123 CE2 PHE A1307 37.516 116.374 3.989 1.00 18.75 ATOM 124 CZ PHE A1307 38.763 116.129 3.469 1.00 20.06 ATOM 125 N LYS A1308 33.795 111.168 4.460 1.00 17.34 ATOM 126 CA LYS A1308 32.851 110.230 3.987 1.00 17.07 ATOM 127 C LYS A1308 32.227 110.645 2.710 1.00 17.09 ATOM 128 O LYS A1308 31.670 109.774 2.001 1.00 15.67 ATOM 129 CB LYS A1308 31.752 110.080 5.036 1.00 18.82 ATOM 130 CG LYS A1308 32.215 109.666 6.413 1.00 19.12 ATOM 131 CD LYS A1308 30.976 109.275 7.208 1.00 19.99 ATOM 132 CE LYS A1308 31.268 109.025 8.665 1.00 22.54 ATOM 133 NZ LYS A1308 30.000 108.728 9.419 1.00 23.17 ATOM 134 N TRP A1309 32.159 111.967 2.431 1.00 16.14 ATOM 135 CA TRP A1309 31.485 112.414 1.230 1.00 15.33 ATOM 136 C TRP A1309 32.477 113.140 0.313 1.00 15.05 ATOM 137 O TRP A1309 33.281 113.989 0.778 1.00 16.69 ATOM 138 CB TRP A1309 30.334 113.335 1.518 1.00 17.69 ATOM 139 CG TRP A1309 29.355 112.854 2.415 1.00 18.26 ATOM 140 CD1 TRP A1309 29.277 113.158 3.697 1.00 19.56 ATOM 141 CD2 TRP A1309 28.287 111.966 2.125 1.00 19.09 ATOM 142 NE1 TRP A1309 28.224 112.532 4.267 1.00 20.01 ATOM 143 CE2 TRP A1309 27.591 111.774 3.321 1.00 20.68 ATOM 144 CE3 TRP A1309 27.868 111.291 0.969 1.00 19.26 ATOM 145 CZ2 TRP A1309 26.441 110.957 3.420 1.00 18.72 ATOM 146 CZ3 TRP A1309 26.726 110.493 1.040 1.00 21.14 ATOM 147 CH2 TRP A1309 26.016 110.332 2.259 1.00 22.38 ATOM 148 N ALA A1310 32.364 112.847 -0.978 1.00 13.99 ATOM 149 CA ALA A1310 33.234 113.398 -2.013 1.00 15.13 ATOM 150 C ALA A1310 33.133 114.986 -2.051 1.00 14.23 ATOM 151 O ALA A1310 34.134 115.661 -2.182 1.00 14.98 ATOM 152 CB ALA A1310 32.838 112.831 -3.372 1.00 15.14 ATOM 153 N TRP A1311 31.937 115.517 -1.940 1.00 13.53 ATOM 154 CA TRP A1311 31.786 116.975 -1.926 1.00 13.77 ATOM 155 C TRP A1311 32.545 117.620 -0.754 1.00 13.84 ATOM 156 O TRP A1311 33.169 118.652 -0.911 1.00 13.54 ATOM 157 CB TRP A1311 30.317 117.382 -1.909 1.00 13.07 ATOM 158 CG TRP A1311 30.183 118.864 -2.059 1.00 13.07 ATOM 159 CD1 TRP A1311 29.770 119.738 -1.129 1.00 12.88 ATOM 160 CD2 TRP A1311 30.597 119.638 -3.174 1.00 12.60 ATOM 161 NE1 TRP A1311 29.849 121.006 -1.597 1.00 12.85 ATOM 162 CE2 TRP A1311 30.393 120.991 -2.835 1.00 12.53 ATOM 163 CE3 TRP A1311 31.111 119.322 -4.418 1.00 13.42 ATOM 164 CZ2 TRP A1311 30.656 122.049 -3.720 1.00 13.08 ATOM 165 CZ3 TRP A1311 31.406 120.370 -5.324 1.00 14.40 ATOM 166 CH2 TRP A1311 31.209 121.730 -4.941 1.00 13.14 ATOM 167 N SER A1312 32.513 116.957 0.399 1.00 13.73 ATOM 168 CA SER A1312 33.215 117.409 1.545 1.00 15.17 ATOM 169 C SER A1312 34.743 117.522 1.268 1.00 14.91 ATOM 170 O SER A1312 35.373 118.542 1.575 1.00 12.41 ATOM 171 CB SER A1312 32.826 116.567 2.730 1.00 16.45 ATOM 172 OG SER A1312 33.331 117.198 3.847 1.00 22.50 ATOM 173 N ARG A1313 35.322 116.508 0.625 1.00 13.36 ATOM 174 CA ARG A1313 36.722 116.573 0.198 1.00 14.51 ATOM 175 C ARG A1313 36.981 117.698 -0.813 1.00 14.12 ATOM 176 O ARG A1313 37.990 118.403 -0.708 1.00 14.36 ATOM 177 CB ARG A1313 37.167 115.220 -0.349 1.00 16.02 ATOM 178 CG ARG A1313 38.542 115.097 -0.968 1.00 18.11 ATOM 179 CD ARG A1313 38.753 113.636 -1.442 1.00 20.60 ATOM 180 NE ARG A1313 40.022 113.500 -2.111 1.00 23.43 ATOM 181 CZ ARG A1313 40.249 113.871 -3.387 1.00 25.73 ATOM 182 NH1 ARG A1313 39.285 114.359 -4.176 1.00 24.31 ATOM 183 NH2 ARG A1313 41.465 113.754 -3.890 1.00 27.40 ATOM 184 N THR A1314 36.093 117.852 -1.755 1.00 12.47 ATOM 185 CA THR A1314 36.228 118.936 -2.709 1.00 14.44 ATOM 186 C THR A1314 36.313 120.319 -2.069 1.00 14.22 ATOM 187 O THR A1314 37.256 121.097 -2.334 1.00 13.96 ATOM 188 CB THR A1314 35.118 118.850 -3.748 1.00 15.60 ATOM 189 OG1 THR A1314 35.252 117.611 -4.461 1.00 16.51 ATOM 190 CG2 THR A1314 35.123 120.064 -4.800 1.00 15.53 ATOM 191 N GLU A1315 35.391 120.606 -1.160 1.00 13.27 ATOM 192 CA GLU A1315 35.356 121.950 -0.561 1.00 12.24 ATOM 193 C GLU A1315 36.586 122.087 0.323 1.00 12.24 ATOM 194 O GLU A1315 37.238 123.106 0.344 1.00 10.76 ATOM 195 CB GLU A1315 34.079 122.174 0.236 1.00 11.87 ATOM 196 CG GLU A1315 32.810 122.044 -0.574 1.00 12.74 ATOM 197 CD GLU A1315 31.808 123.179 -0.275 1.00 14.91 ATOM 198 OE1 GLU A1315 32.000 124.294 -0.819 1.00 15.80 ATOM 199 OE2 GLU A1315 30.857 122.950 0.475 1.00 13.96 ATOM 200 N HIS A1316 36.959 121.012 0.998 1.00 11.91 ATOM 201 CA HIS A1316 38.068 121.043 1.892 1.00 12.65 ATOM 202 C HIS A1316 39.395 121.409 1.221 1.00 14.33 ATOM 203 O HIS A1316 40.286 122.080 1.811 1.00 14.28 ATOM 204 CB HIS A1316 38.198 119.707 2.639 1.00 13.76 ATOM 205 CG HIS A1316 39.496 119.565 3.335 1.00 15.16 ATOM 206 ND1 HIS A1316 39.746 120.110 4.592 1.00 16.90 ATOM 207 CD2 HIS A1316 40.664 119.015 2.920 1.00 15.30 ATOM 208 CE1 HIS A1316 40.997 119.837 4.933 1.00 15.84 ATOM 209 NE2 HIS A1316 41.546 119.126 3.959 1.00 16.50 ATOM 210 N ILE A1317 39.571 120.908 0.018 1.00 15.36 ATOM 211 CA ILE A1317 40.812 121.174 -0.687 1.00 17.40 ATOM 212 C ILE A1317 41.010 122.665 -0.889 1.00 17.34 ATOM 213 O ILE A1317 42.138 123.117 -0.882 1.00 15.67 ATOM 214 CB ILE A1317 40.892 120.418 -2.015 1.00 17.83 ATOM 215 CG1 ILE A1317 41.086 118.903 -1.724 1.00 18.83 ATOM 216 CG2 ILE A1317 42.114 120.847 -2.837 1.00 20.40 ATOM 217 CD1 ILE A1317 40.649 118.050 -2.905 1.00 18.02 ATOM 218 N ARG A1318 39.930 123.415 -0.972 1.00 16.30 ATOM 219 CA ARG A1318 40.038 124.876 -1.099 1.00 18.29 ATOM 220 C ARG A1318 40.649 125.568 0.084 1.00 17.89 ATOM 221 O ARG A1318 41.231 126.637 -0.077 1.00 17.79 ATOM 222 CB ARG A1318 38.690 125.503 -1.458 1.00 17.30 ATOM 223 CG ARG A1318 38.087 124.829 -2.685 1.00 16.50 ATOM 224 CD ARG A1318 36.821 125.520 -3.078 1.00 16.14 ATOM 225 NE ARG A1318 35.878 124.719 -3.851 1.00 15.08 ATOM 226 CZ ARG A1318 34.642 124.466 -3.459 1.00 14.32 ATOM 227 NH1 ARG A1318 34.140 124.933 -2.305 1.00 13.34 ATOM 228 NH2 ARG A1318 33.871 123.721 -4.216 1.00 16.29 ATOM 229 N VAL A1319 40.551 124.959 1.254 1.00 17.44 ATOM 230 CA VAL A1319 41.239 125.457 2.438 1.00 18.79 ATOM 231 C VAL A1319 42.750 125.461 2.227 1.00 20.68 ATOM 232 O VAL A1319 43.391 126.355 2.645 1.00 21.69 ATOM 233 CB VAL A1319 40.973 124.575 3.657 1.00 20.83 ATOM 234 CG1 VAL A1319 41.759 125.059 4.860 1.00 22.73 ATOM 235 CG2 VAL A1319 39.499 124.649 4.039 1.00 22.39 ATOM 236 N HIS A1320 43.305 124.438 1.598 1.00 21.24 ATOM 237 CA HIS A1320 44.736 124.422 1.241 1.00 20.37 ATOM 238 C HIS A1320 45.057 125.394 0.109 1.00 21.38 ATOM 239 O HIS A1320 46.024 126.092 0.212 1.00 24.53 ATOM 240 CB HIS A1320 45.249 123.030 0.877 1.00 18.84 ATOM 241 CG HIS A1320 45.078 121.994 1.964 1.00 17.14 ATOM 242 ND1 HIS A1320 45.805 122.029 3.119 1.00 17.81 ATOM 243 CD2 HIS A1320 44.286 120.887 2.053 1.00 17.31 ATOM 244 CE1 HIS A1320 45.456 121.022 3.903 1.00 18.95 ATOM 245 NE2 HIS A1320 44.545 120.292 3.277 1.00 18.70 ATOM 246 N THR A1321 44.266 125.454 -0.945 1.00 21.28 ATOM 247 CA THR A1321 44.667 126.180 -2.112 1.00 22.32 ATOM 248 C THR A1321 44.323 127.673 -1.938 1.00 24.45 ATOM 249 O THR A1321 44.877 128.487 -2.608 1.00 25.96 ATOM 250 CB THR A1321 43.974 125.752 -3.408 1.00 20.78 ATOM 251 OG1 THR A1321 42.565 126.057 -3.335 1.00 21.96 ATOM 252 CG2 THR A1321 44.190 124.308 -3.748 1.00 19.46 ATOM 253 N GLY A1322 43.372 128.035 -1.113 1.00 20.49 ATOM 254 CA GLY A1322 43.072 129.416 -0.965 1.00 21.09 ATOM 255 C GLY A1322 42.095 129.876 -2.033 1.00 20.97 ATOM 256 O GLY A1322 41.638 130.990 -1.970 1.00 22.87 ATOM 257 ZN ZN A1402 43.598 118.561 3.687 1.00 18.28 TER