HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNM TITLE REF6 ZnF2-4-NAC004-mC3 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.05 ANGSTORMS DBREF 6JNM B 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 B 31 ALA ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN SEQRES 2 B 31 THR PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG SEQRES 3 B 31 LYS THR GLY HIS SER ATOM 1 N ALA B1323 3.806 91.158 -32.412 1.00 18.61 ATOM 2 CA ALA B1323 3.373 92.071 -31.332 1.00 19.53 ATOM 3 C ALA B1323 2.799 93.405 -31.839 1.00 19.22 ATOM 4 O ALA B1323 3.117 93.885 -32.926 1.00 19.74 ATOM 5 CB ALA B1323 4.543 92.322 -30.329 1.00 18.59 ATOM 6 N ARG B1324 1.932 93.989 -31.060 1.00 20.08 ATOM 7 CA ARG B1324 1.436 95.294 -31.292 1.00 21.55 ATOM 8 C ARG B1324 1.543 96.032 -29.967 1.00 22.81 ATOM 9 O ARG B1324 0.562 96.267 -29.269 1.00 23.07 ATOM 10 CB ARG B1324 0.000 95.256 -31.833 1.00 26.99 ATOM 11 CG ARG B1324 -0.172 94.375 -33.048 1.00 27.25 ATOM 12 CD ARG B1324 -1.646 94.159 -33.418 1.00 31.09 ATOM 13 NE ARG B1324 -2.019 95.401 -33.992 1.00 30.48 ATOM 14 CZ ARG B1324 -1.804 95.732 -35.242 1.00 35.63 ATOM 15 NH1 ARG B1324 -2.134 96.959 -35.654 1.00 39.05 ATOM 16 NH2 ARG B1324 -1.300 94.847 -36.093 1.00 41.61 ATOM 17 N PRO B1325 2.765 96.449 -29.612 1.00 21.47 ATOM 18 CA PRO B1325 2.910 97.018 -28.270 1.00 19.63 ATOM 19 C PRO B1325 2.368 98.433 -28.066 1.00 19.84 ATOM 20 O PRO B1325 2.303 98.859 -26.948 1.00 24.33 ATOM 21 CB PRO B1325 4.426 96.964 -28.043 1.00 19.71 ATOM 22 CG PRO B1325 5.053 97.052 -29.388 1.00 20.99 ATOM 23 CD PRO B1325 4.024 96.451 -30.376 1.00 20.37 ATOM 24 N TYR B1326 2.013 99.187 -29.079 1.00 17.58 ATOM 25 CA TYR B1326 1.564 100.540 -28.842 1.00 18.77 ATOM 26 C TYR B1326 0.060 100.470 -28.703 1.00 22.70 ATOM 27 O TYR B1326 -0.633 100.101 -29.649 1.00 20.86 ATOM 28 CB TYR B1326 1.951 101.394 -30.029 1.00 19.74 ATOM 29 CG TYR B1326 3.528 101.463 -30.145 1.00 21.10 ATOM 30 CD1 TYR B1326 4.277 102.288 -29.260 1.00 21.21 ATOM 31 CD2 TYR B1326 4.241 100.612 -30.995 1.00 20.52 ATOM 32 CE1 TYR B1326 5.686 102.314 -29.287 1.00 22.36 ATOM 33 CE2 TYR B1326 5.656 100.658 -31.084 1.00 20.98 ATOM 34 CZ TYR B1326 6.367 101.505 -30.208 1.00 20.91 ATOM 35 OH TYR B1326 7.693 101.565 -30.258 1.00 18.85 ATOM 36 N VAL B1327 -0.429 100.800 -27.517 1.00 24.05 ATOM 37 CA VAL B1327 -1.837 100.620 -27.126 1.00 25.95 ATOM 38 C VAL B1327 -2.383 101.998 -26.838 1.00 27.68 ATOM 39 O VAL B1327 -1.978 102.563 -25.826 1.00 31.32 ATOM 40 CB VAL B1327 -1.972 99.832 -25.840 1.00 28.54 ATOM 41 CG1 VAL B1327 -3.487 99.672 -25.518 1.00 31.03 ATOM 42 CG2 VAL B1327 -1.308 98.451 -26.003 1.00 32.01 ATOM 43 N CYS B1328 -3.213 102.579 -27.708 1.00 23.70 ATOM 44 CA CYS B1328 -3.781 103.955 -27.432 1.00 28.66 ATOM 45 C CYS B1328 -4.535 103.972 -26.099 1.00 31.58 ATOM 46 O CYS B1328 -5.215 102.996 -25.765 1.00 28.03 ATOM 47 CB CYS B1328 -4.745 104.314 -28.534 1.00 32.78 ATOM 48 SG CYS B1328 -5.746 105.838 -28.537 1.00 32.55 ATOM 49 N ALA B1329 -4.308 105.022 -25.316 1.00 36.38 ATOM 50 CA ALA B1329 -4.826 105.120 -23.955 1.00 39.75 ATOM 51 C ALA B1329 -6.169 105.822 -23.945 1.00 36.03 ATOM 52 O ALA B1329 -6.887 105.636 -23.013 1.00 35.55 ATOM 53 CB ALA B1329 -3.843 105.859 -23.026 1.00 39.93 ATOM 54 N GLU B1330 -6.497 106.593 -24.973 1.00 40.88 ATOM 55 CA GLU B1330 -7.788 107.330 -25.026 1.00 45.71 ATOM 56 C GLU B1330 -8.983 106.469 -24.577 1.00 42.90 ATOM 57 O GLU B1330 -9.122 105.339 -25.036 1.00 34.83 ATOM 58 CB GLU B1330 -8.086 107.851 -26.437 1.00 48.50 ATOM 59 CG GLU B1330 -9.186 108.903 -26.501 1.00 50.61 ATOM 60 CD GLU B1330 -8.747 110.219 -25.863 1.00 54.52 ATOM 61 OE1 GLU B1330 -7.554 110.387 -25.469 1.00 53.65 ATOM 62 OE2 GLU B1330 -9.609 111.093 -25.753 1.00 61.12 ATOM 63 N PRO B1331 -9.835 106.997 -23.655 1.00 41.09 ATOM 64 CA PRO B1331 -11.001 106.170 -23.264 1.00 36.52 ATOM 65 C PRO B1331 -11.836 105.635 -24.486 1.00 31.36 ATOM 66 O PRO B1331 -12.167 106.429 -25.391 1.00 30.93 ATOM 67 CB PRO B1331 -11.786 107.119 -22.335 1.00 41.26 ATOM 68 CG PRO B1331 -10.705 107.984 -21.675 1.00 39.49 ATOM 69 CD PRO B1331 -9.695 108.218 -22.799 1.00 40.76 ATOM 70 N ASP B1332 -12.071 104.301 -24.545 1.00 28.11 ATOM 71 CA ASP B1332 -12.843 103.673 -25.661 1.00 34.93 ATOM 72 C ASP B1332 -12.225 103.683 -27.128 1.00 36.56 ATOM 73 O ASP B1332 -12.943 103.395 -28.114 1.00 32.63 ATOM 74 CB ASP B1332 -14.303 104.244 -25.688 1.00 38.31 ATOM 75 CG ASP B1332 -14.998 104.206 -24.274 1.00 41.38 ATOM 76 OD1 ASP B1332 -14.948 103.136 -23.599 1.00 39.21 ATOM 77 OD2 ASP B1332 -15.578 105.251 -23.848 1.00 50.89 ATOM 78 N CYS B1333 -10.932 104.032 -27.278 1.00 39.00 ATOM 79 CA CYS B1333 -10.255 104.054 -28.604 1.00 38.28 ATOM 80 C CYS B1333 -10.003 102.604 -28.904 1.00 37.84 ATOM 81 O CYS B1333 -10.529 102.112 -29.878 1.00 36.36 ATOM 82 CB CYS B1333 -8.977 104.902 -28.515 1.00 42.47 ATOM 83 SG CYS B1333 -7.622 104.902 -29.743 1.00 41.77 ATOM 84 N GLY B1334 -9.295 101.900 -28.013 1.00 32.89 ATOM 85 CA GLY B1334 -9.062 100.471 -28.185 1.00 35.52 ATOM 86 C GLY B1334 -7.998 100.083 -29.257 1.00 36.28 ATOM 87 O GLY B1334 -7.681 98.933 -29.384 1.00 42.18 ATOM 88 N GLN B1335 -7.446 101.030 -29.992 1.00 29.90 ATOM 89 CA GLN B1335 -6.620 100.696 -31.117 1.00 31.96 ATOM 90 C GLN B1335 -5.203 100.345 -30.676 1.00 32.45 ATOM 91 O GLN B1335 -4.641 100.936 -29.699 1.00 27.87 ATOM 92 CB GLN B1335 -6.533 101.847 -32.055 1.00 31.74 ATOM 93 CG GLN B1335 -7.823 102.082 -32.830 1.00 33.73 ATOM 94 CD GLN B1335 -7.522 102.932 -34.015 1.00 37.21 ATOM 95 OE1 GLN B1335 -8.258 103.842 -34.343 1.00 41.50 ATOM 96 NE2 GLN B1335 -6.383 102.666 -34.661 1.00 45.35 ATOM 97 N THR B1336 -4.631 99.373 -31.369 1.00 28.12 ATOM 98 CA THR B1336 -3.229 99.044 -31.124 1.00 26.60 ATOM 99 C THR B1336 -2.374 99.154 -32.400 1.00 28.49 ATOM 100 O THR B1336 -2.905 99.077 -33.477 1.00 24.39 ATOM 101 CB THR B1336 -3.103 97.648 -30.502 1.00 26.35 ATOM 102 OG1 THR B1336 -3.400 96.655 -31.475 1.00 22.71 ATOM 103 CG2 THR B1336 -4.016 97.522 -29.265 1.00 27.58 ATOM 104 N PHE B1337 -1.043 99.284 -32.264 1.00 23.15 ATOM 105 CA PHE B1337 -0.152 99.420 -33.418 1.00 22.35 ATOM 106 C PHE B1337 1.160 98.660 -33.196 1.00 21.77 ATOM 107 O PHE B1337 1.647 98.518 -32.046 1.00 19.57 ATOM 108 CB PHE B1337 0.143 100.883 -33.649 1.00 24.44 ATOM 109 CG PHE B1337 -1.072 101.725 -33.699 1.00 24.85 ATOM 110 CD1 PHE B1337 -1.646 102.184 -32.515 1.00 26.37 ATOM 111 CD2 PHE B1337 -1.637 102.074 -34.932 1.00 23.64 ATOM 112 CE1 PHE B1337 -2.776 102.991 -32.552 1.00 27.98 ATOM 113 CE2 PHE B1337 -2.761 102.843 -34.962 1.00 23.86 ATOM 114 CZ PHE B1337 -3.321 103.323 -33.766 1.00 24.93 ATOM 115 N ARG B1338 1.694 98.131 -34.285 1.00 19.15 ATOM 116 CA ARG B1338 2.935 97.395 -34.272 1.00 17.36 ATOM 117 C ARG B1338 4.153 98.332 -34.324 1.00 16.76 ATOM 118 O ARG B1338 5.193 97.973 -33.751 1.00 15.31 ATOM 119 CB ARG B1338 3.042 96.479 -35.455 1.00 18.03 ATOM 120 CG ARG B1338 4.293 95.612 -35.444 1.00 17.81 ATOM 121 CD ARG B1338 4.201 94.529 -36.473 1.00 18.08 ATOM 122 NE ARG B1338 3.238 93.609 -35.971 1.00 20.33 ATOM 123 CZ ARG B1338 2.222 93.102 -36.654 1.00 23.59 ATOM 124 NH1 ARG B1338 1.375 92.343 -36.002 1.00 24.46 ATOM 125 NH2 ARG B1338 2.090 93.289 -37.970 1.00 25.05 ATOM 126 N PHE B1339 4.017 99.484 -34.989 1.00 14.57 ATOM 127 CA PHE B1339 5.158 100.364 -35.245 1.00 15.34 ATOM 128 C PHE B1339 4.932 101.741 -34.669 1.00 15.46 ATOM 129 O PHE B1339 3.800 102.273 -34.701 1.00 14.74 ATOM 130 CB PHE B1339 5.458 100.478 -36.717 1.00 14.90 ATOM 131 CG PHE B1339 5.725 99.172 -37.351 1.00 15.25 ATOM 132 CD1 PHE B1339 6.903 98.506 -37.089 1.00 15.14 ATOM 133 CD2 PHE B1339 4.756 98.560 -38.130 1.00 14.84 ATOM 134 CE1 PHE B1339 7.125 97.242 -37.604 1.00 15.63 ATOM 135 CE2 PHE B1339 4.978 97.323 -38.655 1.00 16.29 ATOM 136 CZ PHE B1339 6.195 96.671 -38.437 1.00 16.61 ATOM 137 N VAL B1340 5.986 102.311 -34.109 1.00 15.16 ATOM 138 CA VAL B1340 5.874 103.555 -33.401 1.00 15.25 ATOM 139 C VAL B1340 5.368 104.695 -34.289 1.00 17.09 ATOM 140 O VAL B1340 4.571 105.571 -33.837 1.00 15.79 ATOM 141 CB VAL B1340 7.176 103.927 -32.692 1.00 16.32 ATOM 142 CG1 VAL B1340 8.348 104.275 -33.611 1.00 16.13 ATOM 143 CG2 VAL B1340 6.910 105.104 -31.772 1.00 17.65 ATOM 144 N SER B1341 5.818 104.727 -35.535 1.00 17.50 ATOM 145 CA SER B1341 5.391 105.813 -36.436 1.00 18.43 ATOM 146 C SER B1341 3.868 105.720 -36.632 1.00 19.48 ATOM 147 O SER B1341 3.227 106.723 -36.791 1.00 15.21 ATOM 148 CB SER B1341 6.001 105.674 -37.817 1.00 17.78 ATOM 149 OG SER B1341 5.635 106.774 -38.650 1.00 17.08 ATOM 150 N ASP B1342 3.341 104.499 -36.671 1.00 20.42 ATOM 151 CA ASP B1342 1.889 104.359 -36.895 1.00 23.32 ATOM 152 C ASP B1342 1.119 104.899 -35.675 1.00 23.41 ATOM 153 O ASP B1342 0.053 105.510 -35.852 1.00 25.24 ATOM 154 CB ASP B1342 1.475 102.903 -37.194 1.00 21.37 ATOM 155 CG ASP B1342 2.115 102.351 -38.514 1.00 21.23 ATOM 156 OD1 ASP B1342 2.337 103.182 -39.439 1.00 18.99 ATOM 157 OD2 ASP B1342 2.384 101.095 -38.575 1.00 20.13 ATOM 158 N PHE B1343 1.634 104.656 -34.479 1.00 21.23 ATOM 159 CA PHE B1343 1.018 105.145 -33.250 1.00 24.08 ATOM 160 C PHE B1343 1.088 106.675 -33.204 1.00 25.60 ATOM 161 O PHE B1343 0.086 107.317 -32.913 1.00 26.36 ATOM 162 CB PHE B1343 1.700 104.578 -32.013 1.00 23.32 ATOM 163 CG PHE B1343 1.058 104.956 -30.712 1.00 24.14 ATOM 164 CD1 PHE B1343 -0.360 105.002 -30.571 1.00 27.30 ATOM 165 CD2 PHE B1343 1.842 105.235 -29.590 1.00 26.30 ATOM 166 CE1 PHE B1343 -0.955 105.352 -29.334 1.00 26.86 ATOM 167 CE2 PHE B1343 1.262 105.556 -28.353 1.00 28.93 ATOM 168 CZ PHE B1343 -0.152 105.630 -28.217 1.00 27.41 ATOM 169 N SER B1344 2.266 107.231 -33.481 1.00 24.47 ATOM 170 CA SER B1344 2.399 108.667 -33.639 1.00 26.56 ATOM 171 C SER B1344 1.393 109.268 -34.655 1.00 27.13 ATOM 172 O SER B1344 0.890 110.359 -34.468 1.00 25.15 ATOM 173 CB SER B1344 3.811 109.103 -34.019 1.00 25.33 ATOM 174 OG SER B1344 4.782 108.558 -33.162 1.00 25.44 ATOM 175 N ARG B1345 1.152 108.587 -35.746 1.00 25.38 ATOM 176 CA ARG B1345 0.271 109.097 -36.755 1.00 29.28 ATOM 177 C ARG B1345 -1.164 109.165 -36.220 1.00 30.65 ATOM 178 O ARG B1345 -1.878 110.133 -36.518 1.00 28.55 ATOM 179 CB ARG B1345 0.278 108.225 -37.981 1.00 31.11 ATOM 180 CG ARG B1345 -0.718 108.591 -39.090 1.00 38.48 ATOM 181 CD ARG B1345 -0.640 107.587 -40.242 1.00 41.59 ATOM 182 NE ARG B1345 0.296 108.062 -41.267 1.00 50.04 ATOM 183 CZ ARG B1345 1.592 107.766 -41.377 1.00 56.76 ATOM 184 NH1 ARG B1345 2.292 108.320 -42.372 1.00 55.78 ATOM 185 NH2 ARG B1345 2.198 106.908 -40.532 1.00 66.76 ATOM 186 N HIS B1346 -1.566 108.109 -35.546 1.00 27.82 ATOM 187 CA HIS B1346 -2.834 108.015 -34.915 1.00 32.25 ATOM 188 C HIS B1346 -3.011 109.146 -33.877 1.00 34.21 ATOM 189 O HIS B1346 -4.070 109.743 -33.836 1.00 38.24 ATOM 190 CB HIS B1346 -3.006 106.652 -34.267 1.00 32.32 ATOM 191 CG HIS B1346 -4.221 106.567 -33.397 1.00 34.55 ATOM 192 ND1 HIS B1346 -5.502 106.523 -33.918 1.00 37.52 ATOM 193 CD2 HIS B1346 -4.359 106.501 -32.055 1.00 30.71 ATOM 194 CE1 HIS B1346 -6.378 106.443 -32.936 1.00 36.94 ATOM 195 NE2 HIS B1346 -5.710 106.428 -31.798 1.00 38.40 ATOM 196 N LYS B1347 -1.986 109.459 -33.094 1.00 31.71 ATOM 197 CA LYS B1347 -2.063 110.535 -32.103 1.00 33.79 ATOM 198 C LYS B1347 -2.210 111.886 -32.787 1.00 37.37 ATOM 199 O LYS B1347 -2.971 112.688 -32.313 1.00 33.41 ATOM 200 CB LYS B1347 -0.852 110.546 -31.166 1.00 32.78 ATOM 201 CG LYS B1347 -0.907 109.411 -30.149 1.00 37.34 ATOM 202 CD LYS B1347 0.431 108.813 -29.787 1.00 45.91 ATOM 203 CE LYS B1347 1.519 109.835 -29.532 1.00 50.19 ATOM 204 NZ LYS B1347 2.617 109.239 -28.752 1.00 52.95 ATOM 205 N ARG B1348 -1.515 112.139 -33.895 1.00 37.60 ATOM 206 CA ARG B1348 -1.733 113.376 -34.651 1.00 43.19 ATOM 207 C ARG B1348 -3.140 113.430 -35.174 1.00 44.26 ATOM 208 O ARG B1348 -3.799 114.407 -34.962 1.00 51.25 ATOM 209 CB ARG B1348 -0.827 113.505 -35.884 1.00 44.66 ATOM 210 CG ARG B1348 0.498 114.170 -35.648 1.00 46.16 ATOM 211 CD ARG B1348 1.193 114.560 -36.960 1.00 45.13 ATOM 212 NE ARG B1348 1.220 113.528 -38.040 1.00 47.42 ATOM 213 CZ ARG B1348 1.915 112.343 -38.084 1.00 47.51 ATOM 214 NH1 ARG B1348 1.816 111.610 -39.196 1.00 47.56 ATOM 215 NH2 ARG B1348 2.700 111.854 -37.078 1.00 37.90 ATOM 216 N LYS B1349 -3.583 112.389 -35.871 1.00 46.21 ATOM 217 CA LYS B1349 -4.892 112.402 -36.550 1.00 47.81 ATOM 218 C LYS B1349 -5.989 112.655 -35.539 1.00 48.39 ATOM 219 O LYS B1349 -6.866 113.441 -35.781 1.00 51.43 ATOM 220 CB LYS B1349 -5.225 111.100 -37.313 1.00 52.84 ATOM 221 CG LYS B1349 -5.049 111.133 -38.840 1.00 63.10 ATOM 222 CD LYS B1349 -3.633 110.698 -39.281 1.00 73.51 ATOM 223 CE LYS B1349 -3.158 111.231 -40.635 1.00 76.68 ATOM 224 NZ LYS B1349 -4.229 111.088 -41.655 1.00 85.87 ATOM 225 N THR B1350 -5.931 111.974 -34.408 1.00 46.19 ATOM 226 CA THR B1350 -7.029 111.926 -33.490 1.00 38.05 ATOM 227 C THR B1350 -6.968 112.867 -32.285 1.00 35.32 ATOM 228 O THR B1350 -7.973 113.011 -31.645 1.00 36.74 ATOM 229 CB THR B1350 -7.189 110.492 -32.905 1.00 39.41 ATOM 230 OG1 THR B1350 -6.114 110.169 -32.000 1.00 33.20 ATOM 231 CG2 THR B1350 -7.292 109.473 -33.997 1.00 41.87 ATOM 232 N GLY B1351 -5.797 113.390 -31.910 1.00 34.58 ATOM 233 CA GLY B1351 -5.556 114.014 -30.576 1.00 31.44 ATOM 234 C GLY B1351 -5.438 113.101 -29.354 1.00 34.12 ATOM 235 O GLY B1351 -5.272 113.573 -28.221 1.00 33.28 ATOM 236 N HIS B1352 -5.479 111.779 -29.544 1.00 35.11 ATOM 237 CA HIS B1352 -5.400 110.839 -28.392 1.00 33.84 ATOM 238 C HIS B1352 -4.006 110.858 -27.755 1.00 40.17 ATOM 239 O HIS B1352 -3.045 111.174 -28.446 1.00 41.10 ATOM 240 CB HIS B1352 -5.839 109.436 -28.854 1.00 33.34 ATOM 241 CG HIS B1352 -7.254 109.386 -29.389 1.00 38.66 ATOM 242 ND1 HIS B1352 -7.896 108.210 -29.712 1.00 41.75 ATOM 243 CD2 HIS B1352 -8.145 110.376 -29.676 1.00 39.32 ATOM 244 CE1 HIS B1352 -9.108 108.462 -30.177 1.00 38.41 ATOM 245 NE2 HIS B1352 -9.282 109.775 -30.164 1.00 40.99 ATOM 246 N SER B1353 -3.930 110.572 -26.449 1.00 50.49 ATOM 247 CA SER B1353 -2.695 110.533 -25.630 1.00 52.76 ATOM 248 C SER B1353 -1.871 111.812 -25.758 1.00 56.18 ATOM 249 O SER B1353 -1.685 112.522 -24.766 1.00 61.82 ATOM 250 CB SER B1353 -1.878 109.271 -25.956 1.00 53.54 ATOM 251 OG SER B1353 -2.741 108.175 -26.383 1.00 47.65 ATOM 252 ZN ZN B1403 -6.699 106.366 -30.055 1.00 31.01 TER