HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNM TITLE REF6 ZnF2-4-NAC004-mC3 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.05 ANGSTORMS DBREF 6JNM B 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 B 28 ARG ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN PHE SEQRES 2 B 28 PHE SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL HIS SEQRES 3 B 28 SER ASP ATOM 1 N ARG B1265 26.650 124.041 -35.464 1.00 67.03 ATOM 2 CA ARG B1265 26.822 123.549 -36.867 1.00 69.56 ATOM 3 C ARG B1265 27.864 122.464 -36.912 1.00 62.75 ATOM 4 O ARG B1265 29.027 122.713 -36.638 1.00 60.89 ATOM 5 CB ARG B1265 27.247 124.658 -37.833 1.00 69.68 ATOM 6 CG ARG B1265 26.072 125.315 -38.530 1.00 77.70 ATOM 7 CD ARG B1265 26.290 126.805 -38.707 1.00 83.94 ATOM 8 NE ARG B1265 25.189 127.574 -38.110 1.00 95.41 ATOM 9 CZ ARG B1265 24.983 127.781 -36.796 1.00104.02 ATOM 10 NH1 ARG B1265 25.801 127.273 -35.870 1.00105.11 ATOM 11 NH2 ARG B1265 23.929 128.503 -36.390 1.00 99.04 ATOM 12 N ASN B1266 27.412 121.273 -37.287 1.00 54.95 ATOM 13 CA ASN B1266 28.221 120.060 -37.383 1.00 49.92 ATOM 14 C ASN B1266 27.815 119.511 -38.703 1.00 49.32 ATOM 15 O ASN B1266 26.799 118.808 -38.811 1.00 48.44 ATOM 16 CB ASN B1266 27.816 119.086 -36.306 1.00 44.58 ATOM 17 CG ASN B1266 28.213 119.558 -34.966 1.00 43.75 ATOM 18 OD1 ASN B1266 29.330 119.294 -34.519 1.00 40.51 ATOM 19 ND2 ASN B1266 27.299 120.248 -34.293 1.00 39.78 ATOM 20 N ILE B1267 28.547 119.927 -39.719 1.00 47.19 ATOM 21 CA ILE B1267 28.110 119.801 -41.103 1.00 46.45 ATOM 22 C ILE B1267 28.798 118.608 -41.672 1.00 43.69 ATOM 23 O ILE B1267 30.003 118.398 -41.475 1.00 39.64 ATOM 24 CB ILE B1267 28.462 121.036 -41.959 1.00 47.18 ATOM 25 CG1 ILE B1267 27.717 122.261 -41.388 1.00 56.58 ATOM 26 CG2 ILE B1267 28.149 120.784 -43.448 1.00 42.90 ATOM 27 CD1 ILE B1267 28.621 123.441 -41.013 1.00 61.50 ATOM 28 N CYS B1268 28.033 117.821 -42.411 1.00 40.77 ATOM 29 CA CYS B1268 28.593 116.597 -42.869 1.00 39.89 ATOM 30 C CYS B1268 29.280 116.922 -44.161 1.00 36.13 ATOM 31 O CYS B1268 28.709 117.587 -44.998 1.00 33.51 ATOM 32 CB CYS B1268 27.531 115.552 -42.988 1.00 36.47 ATOM 33 SG CYS B1268 27.874 114.116 -43.966 1.00 31.97 ATOM 34 N PRO B1269 30.516 116.458 -44.298 1.00 39.95 ATOM 35 CA PRO B1269 31.288 116.923 -45.444 1.00 45.45 ATOM 36 C PRO B1269 31.014 116.080 -46.666 1.00 42.36 ATOM 37 O PRO B1269 31.491 116.414 -47.747 1.00 40.37 ATOM 38 CB PRO B1269 32.740 116.738 -44.960 1.00 42.95 ATOM 39 CG PRO B1269 32.667 115.489 -44.106 1.00 41.27 ATOM 40 CD PRO B1269 31.268 115.453 -43.505 1.00 42.33 ATOM 41 N ILE B1270 30.282 114.978 -46.534 1.00 38.56 ATOM 42 CA ILE B1270 30.158 114.058 -47.673 1.00 35.24 ATOM 43 C ILE B1270 29.395 114.729 -48.869 1.00 36.56 ATOM 44 O ILE B1270 28.470 115.541 -48.697 1.00 32.80 ATOM 45 CB ILE B1270 29.584 112.696 -47.245 1.00 36.32 ATOM 46 CG1 ILE B1270 30.512 111.987 -46.250 1.00 36.43 ATOM 47 CG2 ILE B1270 29.352 111.795 -48.448 1.00 38.25 ATOM 48 CD1 ILE B1270 31.907 111.734 -46.801 1.00 37.95 ATOM 49 N LYS B1271 29.831 114.409 -50.087 1.00 39.94 ATOM 50 CA LYS B1271 29.264 115.050 -51.268 1.00 44.43 ATOM 51 C LYS B1271 27.796 114.648 -51.421 1.00 41.61 ATOM 52 O LYS B1271 27.466 113.470 -51.287 1.00 37.83 ATOM 53 CB LYS B1271 30.089 114.772 -52.545 1.00 48.24 ATOM 54 CG LYS B1271 29.293 115.035 -53.833 1.00 59.18 ATOM 55 CD LYS B1271 30.096 115.652 -54.953 1.00 59.44 ATOM 56 CE LYS B1271 29.169 116.476 -55.832 1.00 61.00 ATOM 57 NZ LYS B1271 29.932 116.832 -57.052 1.00 65.64 ATOM 58 N GLY B1272 26.954 115.659 -51.673 1.00 37.28 ATOM 59 CA GLY B1272 25.505 115.506 -51.760 1.00 37.18 ATOM 60 C GLY B1272 24.763 115.241 -50.446 1.00 36.57 ATOM 61 O GLY B1272 23.586 114.992 -50.542 1.00 36.60 ATOM 62 N CYS B1273 25.406 115.318 -49.257 1.00 35.28 ATOM 63 CA CYS B1273 24.770 115.228 -47.921 1.00 38.68 ATOM 64 C CYS B1273 24.684 116.721 -47.509 1.00 40.87 ATOM 65 O CYS B1273 23.666 117.337 -47.631 1.00 39.53 ATOM 66 CB CYS B1273 25.633 114.308 -46.899 1.00 40.59 ATOM 67 SG CYS B1273 25.658 114.129 -45.003 1.00 62.67 ATOM 68 N GLY B1274 25.779 117.250 -46.962 1.00 46.07 ATOM 69 CA GLY B1274 25.825 118.525 -46.242 1.00 44.54 ATOM 70 C GLY B1274 24.686 118.742 -45.273 1.00 48.49 ATOM 71 O GLY B1274 24.181 119.839 -45.202 1.00 50.06 ATOM 72 N LYS B1275 24.244 117.727 -44.527 1.00 39.00 ATOM 73 CA LYS B1275 23.248 118.020 -43.520 1.00 38.75 ATOM 74 C LYS B1275 24.008 118.527 -42.321 1.00 36.12 ATOM 75 O LYS B1275 25.187 118.214 -42.163 1.00 34.64 ATOM 76 CB LYS B1275 22.432 116.798 -43.179 1.00 40.27 ATOM 77 CG LYS B1275 21.856 116.124 -44.406 1.00 43.52 ATOM 78 CD LYS B1275 21.415 114.715 -44.074 1.00 47.06 ATOM 79 CE LYS B1275 19.964 114.673 -43.630 1.00 49.72 ATOM 80 NZ LYS B1275 19.212 114.400 -44.860 1.00 53.39 ATOM 81 N ASN B1276 23.355 119.299 -41.481 1.00 36.67 ATOM 82 CA ASN B1276 24.000 119.772 -40.255 1.00 43.50 ATOM 83 C ASN B1276 23.238 119.101 -39.140 1.00 37.01 ATOM 84 O ASN B1276 22.110 118.743 -39.328 1.00 40.01 ATOM 85 CB ASN B1276 24.068 121.323 -40.153 1.00 45.39 ATOM 86 CG ASN B1276 23.136 121.901 -39.086 1.00 58.18 ATOM 87 OD1 ASN B1276 21.974 122.175 -39.365 1.00 67.61 ATOM 88 ND2 ASN B1276 23.648 122.087 -37.851 1.00 64.85 ATOM 89 N PHE B1277 23.867 118.948 -37.988 1.00 36.04 ATOM 90 CA PHE B1277 23.354 118.087 -36.934 1.00 36.81 ATOM 91 C PHE B1277 23.464 118.800 -35.638 1.00 42.67 ATOM 92 O PHE B1277 24.378 119.614 -35.429 1.00 47.48 ATOM 93 CB PHE B1277 24.137 116.764 -36.852 1.00 34.09 ATOM 94 CG PHE B1277 23.990 115.950 -38.088 1.00 31.53 ATOM 95 CD1 PHE B1277 22.747 115.364 -38.397 1.00 32.16 ATOM 96 CD2 PHE B1277 25.002 115.848 -38.995 1.00 30.13 ATOM 97 CE1 PHE B1277 22.576 114.623 -39.561 1.00 27.65 ATOM 98 CE2 PHE B1277 24.818 115.168 -40.188 1.00 33.29 ATOM 99 CZ PHE B1277 23.611 114.542 -40.465 1.00 29.48 ATOM 100 N PHE B1278 22.561 118.422 -34.752 1.00 42.52 ATOM 101 CA PHE B1278 22.455 119.050 -33.471 1.00 46.15 ATOM 102 C PHE B1278 23.750 118.928 -32.660 1.00 43.16 ATOM 103 O PHE B1278 23.920 119.660 -31.712 1.00 47.46 ATOM 104 CB PHE B1278 21.209 118.490 -32.708 1.00 48.48 ATOM 105 CG PHE B1278 21.410 117.096 -32.075 1.00 51.70 ATOM 106 CD1 PHE B1278 21.299 115.917 -32.838 1.00 52.41 ATOM 107 CD2 PHE B1278 21.694 116.962 -30.682 1.00 50.35 ATOM 108 CE1 PHE B1278 21.498 114.662 -32.240 1.00 47.22 ATOM 109 CE2 PHE B1278 21.900 115.702 -30.097 1.00 48.56 ATOM 110 CZ PHE B1278 21.799 114.547 -30.884 1.00 42.95 ATOM 111 N SER B1279 24.638 117.987 -33.000 1.00 40.63 ATOM 112 CA SER B1279 25.764 117.637 -32.155 1.00 34.97 ATOM 113 C SER B1279 26.848 116.973 -32.981 1.00 39.75 ATOM 114 O SER B1279 26.537 116.339 -34.008 1.00 36.47 ATOM 115 CB SER B1279 25.341 116.667 -31.044 1.00 32.30 ATOM 116 OG SER B1279 25.512 115.326 -31.461 1.00 32.05 ATOM 117 N HIS B1280 28.113 117.099 -32.529 1.00 34.86 ATOM 118 CA HIS B1280 29.253 116.502 -33.232 1.00 33.97 ATOM 119 C HIS B1280 29.167 115.005 -33.118 1.00 32.35 ATOM 120 O HIS B1280 29.488 114.239 -34.069 1.00 28.75 ATOM 121 CB HIS B1280 30.601 116.972 -32.592 1.00 39.54 ATOM 122 CG HIS B1280 31.805 116.758 -33.451 1.00 40.39 ATOM 123 ND1 HIS B1280 31.948 115.684 -34.305 1.00 49.16 ATOM 124 CD2 HIS B1280 32.946 117.471 -33.559 1.00 45.31 ATOM 125 CE1 HIS B1280 33.102 115.759 -34.937 1.00 47.58 ATOM 126 NE2 HIS B1280 33.727 116.837 -34.500 1.00 50.68 ATOM 127 N LYS B1281 28.796 114.556 -31.920 1.00 31.09 ATOM 128 CA LYS B1281 28.736 113.145 -31.686 1.00 32.10 ATOM 129 C LYS B1281 27.779 112.449 -32.679 1.00 28.47 ATOM 130 O LYS B1281 28.052 111.348 -33.125 1.00 26.53 ATOM 131 CB LYS B1281 28.287 112.872 -30.276 1.00 36.80 ATOM 132 CG LYS B1281 28.771 111.523 -29.815 1.00 47.90 ATOM 133 CD LYS B1281 28.830 111.470 -28.291 1.00 60.96 ATOM 134 CE LYS B1281 30.026 112.217 -27.688 1.00 66.33 ATOM 135 NZ LYS B1281 29.590 112.840 -26.403 1.00 76.84 ATOM 136 N TYR B1282 26.662 113.094 -32.999 1.00 27.86 ATOM 137 CA TYR B1282 25.663 112.491 -33.942 1.00 29.56 ATOM 138 C TYR B1282 26.216 112.578 -35.357 1.00 27.23 ATOM 139 O TYR B1282 26.142 111.599 -36.133 1.00 26.92 ATOM 140 CB TYR B1282 24.189 113.047 -33.827 1.00 26.48 ATOM 141 CG TYR B1282 23.325 112.235 -34.832 1.00 25.61 ATOM 142 CD1 TYR B1282 23.089 110.848 -34.629 1.00 25.92 ATOM 143 CD2 TYR B1282 22.912 112.789 -36.055 1.00 25.20 ATOM 144 CE1 TYR B1282 22.433 110.085 -35.604 1.00 27.44 ATOM 145 CE2 TYR B1282 22.274 112.016 -37.010 1.00 23.74 ATOM 146 CZ TYR B1282 21.996 110.681 -36.764 1.00 22.40 ATOM 147 OH TYR B1282 21.371 109.906 -37.721 1.00 21.59 ATOM 148 N LEU B1283 26.856 113.714 -35.657 1.00 28.67 ATOM 149 CA LEU B1283 27.570 113.840 -36.920 1.00 27.46 ATOM 150 C LEU B1283 28.421 112.617 -37.202 1.00 28.76 ATOM 151 O LEU B1283 28.445 112.141 -38.357 1.00 26.43 ATOM 152 CB LEU B1283 28.381 115.162 -37.059 1.00 30.07 ATOM 153 CG LEU B1283 29.366 115.235 -38.291 1.00 32.42 ATOM 154 CD1 LEU B1283 28.679 115.185 -39.665 1.00 31.60 ATOM 155 CD2 LEU B1283 30.270 116.497 -38.204 1.00 37.28 ATOM 156 N VAL B1284 29.101 112.066 -36.185 1.00 25.95 ATOM 157 CA VAL B1284 29.930 110.914 -36.512 1.00 28.54 ATOM 158 C VAL B1284 29.110 109.637 -36.634 1.00 26.86 ATOM 159 O VAL B1284 29.345 108.820 -37.534 1.00 26.84 ATOM 160 CB VAL B1284 31.214 110.710 -35.624 1.00 31.32 ATOM 161 CG1 VAL B1284 31.576 111.906 -34.760 1.00 37.64 ATOM 162 CG2 VAL B1284 31.145 109.480 -34.777 1.00 32.76 ATOM 163 N GLN B1285 28.121 109.463 -35.764 1.00 28.11 ATOM 164 CA GLN B1285 27.195 108.312 -35.936 1.00 27.59 ATOM 165 C GLN B1285 26.492 108.331 -37.279 1.00 22.43 ATOM 166 O GLN B1285 26.401 107.329 -37.936 1.00 21.52 ATOM 167 CB GLN B1285 26.192 108.246 -34.795 1.00 32.18 ATOM 168 CG GLN B1285 26.837 108.061 -33.428 1.00 32.59 ATOM 169 CD GLN B1285 25.830 108.288 -32.325 1.00 43.83 ATOM 170 OE1 GLN B1285 25.408 107.317 -31.668 1.00 50.71 ATOM 171 NE2 GLN B1285 25.367 109.551 -32.154 1.00 43.99 ATOM 172 N HIS B1286 26.121 109.523 -37.732 1.00 23.30 ATOM 173 CA HIS B1286 25.499 109.697 -39.051 1.00 22.20 ATOM 174 C HIS B1286 26.296 109.118 -40.211 1.00 23.75 ATOM 175 O HIS B1286 25.689 108.651 -41.239 1.00 19.06 ATOM 176 CB HIS B1286 25.152 111.159 -39.255 1.00 22.80 ATOM 177 CG HIS B1286 24.963 111.566 -40.686 1.00 24.96 ATOM 178 ND1 HIS B1286 23.735 111.545 -41.331 1.00 22.67 ATOM 179 CD2 HIS B1286 25.857 112.073 -41.578 1.00 25.60 ATOM 180 CE1 HIS B1286 23.887 112.017 -42.568 1.00 23.72 ATOM 181 NE2 HIS B1286 25.155 112.389 -42.720 1.00 24.73 ATOM 182 N GLN B1287 27.635 109.114 -40.078 1.00 23.16 ATOM 183 CA GLN B1287 28.513 108.622 -41.145 1.00 23.44 ATOM 184 C GLN B1287 28.171 107.204 -41.567 1.00 23.87 ATOM 185 O GLN B1287 28.374 106.841 -42.730 1.00 23.72 ATOM 186 CB GLN B1287 30.041 108.740 -40.763 1.00 24.31 ATOM 187 CG GLN B1287 30.518 110.179 -40.550 1.00 23.45 ATOM 188 CD GLN B1287 30.122 111.109 -41.682 1.00 22.35 ATOM 189 OE1 GLN B1287 29.589 112.208 -41.456 1.00 27.77 ATOM 190 NE2 GLN B1287 30.310 110.652 -42.895 1.00 19.93 ATOM 191 N ARG B1288 27.490 106.434 -40.704 1.00 23.12 ATOM 192 CA ARG B1288 27.149 105.058 -41.058 1.00 21.82 ATOM 193 C ARG B1288 26.152 105.029 -42.259 1.00 22.60 ATOM 194 O ARG B1288 26.022 104.024 -43.034 1.00 21.30 ATOM 195 CB ARG B1288 26.661 104.315 -39.823 1.00 20.96 ATOM 196 CG ARG B1288 25.151 104.512 -39.577 1.00 21.12 ATOM 197 CD ARG B1288 24.725 103.917 -38.273 1.00 21.59 ATOM 198 NE ARG B1288 25.376 104.514 -37.123 1.00 23.36 ATOM 199 CZ ARG B1288 25.346 104.043 -35.893 1.00 25.40 ATOM 200 NH1 ARG B1288 24.605 103.004 -35.616 1.00 27.94 ATOM 201 NH2 ARG B1288 26.003 104.679 -34.921 1.00 26.60 ATOM 202 N VAL B1289 25.449 106.129 -42.420 1.00 19.91 ATOM 203 CA VAL B1289 24.531 106.260 -43.552 1.00 24.19 ATOM 204 C VAL B1289 25.313 106.174 -44.868 1.00 28.30 ATOM 205 O VAL B1289 24.820 105.687 -45.876 1.00 25.16 ATOM 206 CB VAL B1289 23.801 107.647 -43.426 1.00 28.10 ATOM 207 CG1 VAL B1289 23.559 108.342 -44.737 1.00 31.85 ATOM 208 CG2 VAL B1289 22.563 107.544 -42.526 1.00 26.53 ATOM 209 N HIS B1290 26.528 106.714 -44.870 1.00 28.90 ATOM 210 CA HIS B1290 27.361 106.782 -46.101 1.00 28.20 ATOM 211 C HIS B1290 28.288 105.550 -46.257 1.00 30.44 ATOM 212 O HIS B1290 29.119 105.537 -47.121 1.00 30.59 ATOM 213 CB HIS B1290 28.198 108.053 -45.999 1.00 24.30 ATOM 214 CG HIS B1290 27.380 109.307 -45.944 1.00 22.22 ATOM 215 ND1 HIS B1290 26.507 109.628 -46.949 1.00 21.43 ATOM 216 CD2 HIS B1290 27.307 110.326 -45.028 1.00 20.42 ATOM 217 CE1 HIS B1290 25.929 110.788 -46.659 1.00 21.99 ATOM 218 NE2 HIS B1290 26.424 111.245 -45.528 1.00 18.23 ATOM 219 N SER B1291 28.188 104.561 -45.371 1.00 31.26 ATOM 220 CA SER B1291 28.910 103.300 -45.509 1.00 28.92 ATOM 221 C SER B1291 27.898 102.175 -45.749 1.00 32.01 ATOM 222 O SER B1291 26.786 102.244 -45.270 1.00 27.54 ATOM 223 CB SER B1291 29.676 103.000 -44.253 1.00 28.55 ATOM 224 OG SER B1291 29.882 101.603 -44.245 1.00 31.11 ATOM 225 N ASP B1292 28.324 101.103 -46.403 1.00 34.19 ATOM 226 CA ASP B1292 27.481 99.949 -46.722 1.00 34.80 ATOM 227 C ASP B1292 27.504 98.812 -45.688 1.00 29.32 ATOM 228 O ASP B1292 26.790 97.840 -45.822 1.00 31.79 ATOM 229 CB ASP B1292 27.923 99.365 -48.054 1.00 39.54 ATOM 230 CG ASP B1292 27.519 100.198 -49.203 1.00 45.95 ATOM 231 OD1 ASP B1292 26.631 101.067 -49.084 1.00 53.78 ATOM 232 OD2 ASP B1292 28.094 99.979 -50.264 1.00 55.84 ATOM 233 ZN ZN B1401 26.153 112.766 -44.409 1.00 31.53 TER