HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 28 ARG ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN PHE SEQRES 2 A 28 PHE SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL HIS SEQRES 3 A 28 SER ASP ATOM 1 N ARG A1265 72.960 1.508 -9.030 1.00 52.28 ATOM 2 CA ARG A1265 73.072 2.939 -9.166 1.00 54.90 ATOM 3 C ARG A1265 71.688 3.560 -9.254 1.00 55.21 ATOM 4 O ARG A1265 70.714 2.859 -9.279 1.00 52.71 ATOM 5 CB ARG A1265 73.909 3.264 -10.386 1.00 30.00 ATOM 6 CG ARG A1265 74.427 2.056 -11.150 1.00 30.00 ATOM 7 CD ARG A1265 75.748 2.326 -11.839 1.00 30.00 ATOM 8 NE ARG A1265 76.857 1.654 -11.164 1.00 30.00 ATOM 9 CZ ARG A1265 78.111 1.613 -11.625 1.00 30.00 ATOM 10 NH1 ARG A1265 78.403 2.200 -12.773 1.00 30.00 ATOM 11 NH2 ARG A1265 79.079 0.990 -10.943 1.00 30.00 ATOM 12 N ASN A1266 71.626 4.886 -9.316 1.00 53.96 ATOM 13 CA ASN A1266 70.378 5.670 -9.352 1.00 45.63 ATOM 14 C ASN A1266 70.047 6.150 -10.762 1.00 43.75 ATOM 15 O ASN A1266 70.779 6.967 -11.303 1.00 39.19 ATOM 16 CB ASN A1266 70.494 6.895 -8.454 1.00 45.18 ATOM 17 CG ASN A1266 70.943 6.551 -7.064 1.00 44.68 ATOM 18 OD1 ASN A1266 70.159 6.038 -6.247 1.00 48.08 ATOM 19 ND2 ASN A1266 72.220 6.810 -6.791 1.00 43.92 ATOM 20 N ILE A1267 68.903 5.709 -11.284 1.00 42.96 ATOM 21 CA ILE A1267 68.585 5.938 -12.689 1.00 43.72 ATOM 22 C ILE A1267 67.171 6.475 -12.841 1.00 44.16 ATOM 23 O ILE A1267 66.225 5.946 -12.216 1.00 50.14 ATOM 24 CB ILE A1267 68.773 4.648 -13.518 1.00 41.80 ATOM 25 CG1 ILE A1267 70.249 4.223 -13.547 1.00 39.31 ATOM 26 CG2 ILE A1267 68.258 4.845 -14.943 1.00 42.62 ATOM 27 CD1 ILE A1267 71.117 5.001 -14.498 1.00 41.34 ATOM 28 N CYS A1268 67.044 7.522 -13.666 1.00 44.84 ATOM 29 CA CYS A1268 65.743 8.128 -13.950 1.00 44.73 ATOM 30 C CYS A1268 64.841 7.144 -14.709 1.00 45.75 ATOM 31 O CYS A1268 65.249 6.595 -15.723 1.00 49.70 ATOM 32 CB CYS A1268 65.877 9.422 -14.740 1.00 40.00 ATOM 33 SG CYS A1268 64.323 10.269 -15.033 1.00 35.19 ATOM 34 N PRO A1269 63.625 6.892 -14.179 1.00 44.94 ATOM 35 CA PRO A1269 62.704 6.005 -14.885 1.00 43.47 ATOM 36 C PRO A1269 62.099 6.584 -16.152 1.00 45.92 ATOM 37 O PRO A1269 61.548 5.787 -16.929 1.00 51.20 ATOM 38 CB PRO A1269 61.639 5.688 -13.853 1.00 48.59 ATOM 39 CG PRO A1269 61.680 6.836 -12.921 1.00 53.10 ATOM 40 CD PRO A1269 63.115 7.288 -12.861 1.00 49.07 ATOM 41 N ILE A1270 62.236 7.892 -16.414 1.00 45.52 ATOM 42 CA ILE A1270 61.595 8.458 -17.612 1.00 42.90 ATOM 43 C ILE A1270 62.264 7.997 -18.879 1.00 46.03 ATOM 44 O ILE A1270 63.420 8.339 -19.129 1.00 51.29 ATOM 45 CB ILE A1270 61.509 9.987 -17.538 1.00 42.65 ATOM 46 CG1 ILE A1270 60.714 10.413 -16.282 1.00 40.07 ATOM 47 CG2 ILE A1270 60.997 10.598 -18.843 1.00 35.84 ATOM 48 CD1 ILE A1270 59.202 10.554 -16.438 1.00 33.90 ATOM 49 N LYS A1271 61.508 7.237 -19.657 1.00 45.20 ATOM 50 CA LYS A1271 62.001 6.677 -20.908 1.00 39.39 ATOM 51 C LYS A1271 62.462 7.816 -21.820 1.00 36.15 ATOM 52 O LYS A1271 61.642 8.581 -22.351 1.00 38.16 ATOM 53 CB LYS A1271 60.922 5.826 -21.555 1.00 40.66 ATOM 54 N GLY A1272 63.763 7.891 -22.059 1.00 35.65 ATOM 55 CA GLY A1272 64.311 8.973 -22.888 1.00 32.08 ATOM 56 C GLY A1272 65.474 9.703 -22.242 1.00 31.67 ATOM 57 O GLY A1272 66.378 10.157 -22.953 1.00 31.52 ATOM 58 N CYS A1273 65.498 9.771 -20.890 1.00 30.23 ATOM 59 CA CYS A1273 66.727 10.124 -20.176 1.00 30.67 ATOM 60 C CYS A1273 66.828 9.063 -19.109 1.00 32.08 ATOM 61 O CYS A1273 66.077 9.084 -18.145 1.00 37.23 ATOM 62 CB CYS A1273 66.794 11.572 -19.586 1.00 30.51 ATOM 63 SG CYS A1273 66.099 11.943 -17.929 1.00 23.43 ATOM 64 N GLY A1274 67.668 8.073 -19.357 1.00 30.96 ATOM 65 CA GLY A1274 67.960 7.033 -18.371 1.00 30.06 ATOM 66 C GLY A1274 69.149 7.551 -17.613 1.00 33.68 ATOM 67 O GLY A1274 70.071 6.736 -17.264 1.00 38.29 ATOM 68 N LYS A1275 69.163 8.844 -17.255 1.00 30.59 ATOM 69 CA LYS A1275 70.315 9.438 -16.607 1.00 28.76 ATOM 70 C LYS A1275 70.544 8.857 -15.212 1.00 29.56 ATOM 71 O LYS A1275 69.611 8.319 -14.580 1.00 27.29 ATOM 72 CB LYS A1275 70.206 10.949 -16.478 1.00 27.21 ATOM 73 CG LYS A1275 70.121 11.741 -17.791 1.00 29.18 ATOM 74 CD LYS A1275 70.619 13.175 -17.584 1.00 28.89 ATOM 75 CE LYS A1275 71.452 13.739 -18.737 1.00 30.20 ATOM 76 NZ LYS A1275 72.260 14.900 -18.237 1.00 29.20 ATOM 77 N ASN A1276 71.811 8.885 -14.812 1.00 29.90 ATOM 78 CA ASN A1276 72.281 8.271 -13.575 1.00 29.63 ATOM 79 C ASN A1276 72.742 9.352 -12.612 1.00 30.94 ATOM 80 O ASN A1276 73.456 10.303 -13.032 1.00 37.80 ATOM 81 CB ASN A1276 73.419 7.273 -13.886 1.00 29.81 ATOM 82 CG ASN A1276 74.305 6.995 -12.695 1.00 31.36 ATOM 83 OD1 ASN A1276 73.944 6.266 -11.777 1.00 35.59 ATOM 84 ND2 ASN A1276 75.475 7.606 -12.691 1.00 32.70 ATOM 85 N PHE A1277 72.398 9.199 -11.329 1.00 28.52 ATOM 86 CA PHE A1277 72.630 10.253 -10.342 1.00 26.42 ATOM 87 C PHE A1277 73.277 9.744 -9.084 1.00 28.46 ATOM 88 O PHE A1277 72.856 8.693 -8.579 1.00 28.18 ATOM 89 CB PHE A1277 71.315 10.943 -9.938 1.00 26.59 ATOM 90 CG PHE A1277 70.521 11.472 -11.101 1.00 24.44 ATOM 91 CD1 PHE A1277 70.985 12.556 -11.832 1.00 23.21 ATOM 92 CD2 PHE A1277 69.308 10.860 -11.465 1.00 22.20 ATOM 93 CE1 PHE A1277 70.261 13.018 -12.925 1.00 23.46 ATOM 94 CE2 PHE A1277 68.586 11.332 -12.538 1.00 20.38 ATOM 95 CZ PHE A1277 69.054 12.412 -13.270 1.00 21.66 ATOM 96 N PHE A1278 74.242 10.524 -8.558 1.00 29.28 ATOM 97 CA PHE A1278 74.987 10.188 -7.350 1.00 31.55 ATOM 98 C PHE A1278 74.118 9.778 -6.162 1.00 32.49 ATOM 99 O PHE A1278 74.501 8.882 -5.424 1.00 34.25 ATOM 100 CB PHE A1278 75.877 11.368 -6.968 1.00 35.74 ATOM 101 CG PHE A1278 75.126 12.590 -6.483 1.00 39.37 ATOM 102 CD1 PHE A1278 74.536 13.495 -7.370 1.00 42.26 ATOM 103 CD2 PHE A1278 74.956 12.798 -5.113 1.00 40.84 ATOM 104 CE1 PHE A1278 73.832 14.594 -6.905 1.00 41.31 ATOM 105 CE2 PHE A1278 74.250 13.905 -4.633 1.00 42.33 ATOM 106 CZ PHE A1278 73.688 14.812 -5.540 1.00 43.27 ATOM 107 N SER A1279 72.968 10.445 -5.993 1.00 32.63 ATOM 108 CA SER A1279 72.112 10.207 -4.841 1.00 31.83 ATOM 109 C SER A1279 70.689 9.871 -5.266 1.00 32.24 ATOM 110 O SER A1279 70.268 10.230 -6.351 1.00 33.14 ATOM 111 CB SER A1279 72.066 11.395 -3.943 1.00 31.06 ATOM 112 OG SER A1279 71.046 12.313 -4.351 1.00 26.26 ATOM 113 N HIS A1280 69.965 9.217 -4.375 1.00 34.66 ATOM 114 CA HIS A1280 68.569 8.973 -4.669 1.00 33.22 ATOM 115 C HIS A1280 67.739 10.232 -4.491 1.00 33.37 ATOM 116 O HIS A1280 66.860 10.532 -5.293 1.00 33.53 ATOM 117 CB HIS A1280 68.002 7.856 -3.819 1.00 34.62 ATOM 118 CG HIS A1280 66.689 7.370 -4.321 1.00 38.21 ATOM 119 ND1 HIS A1280 65.497 7.898 -3.876 1.00 38.88 ATOM 120 CD2 HIS A1280 66.368 6.465 -5.284 1.00 40.29 ATOM 121 CE1 HIS A1280 64.492 7.325 -4.517 1.00 39.08 ATOM 122 NE2 HIS A1280 64.995 6.457 -5.383 1.00 40.95 ATOM 123 N LYS A1281 68.041 10.995 -3.445 1.00 32.92 ATOM 124 CA LYS A1281 67.308 12.211 -3.156 1.00 34.00 ATOM 125 C LYS A1281 67.300 13.165 -4.366 1.00 33.97 ATOM 126 O LYS A1281 66.243 13.635 -4.779 1.00 30.63 ATOM 127 CB LYS A1281 67.912 12.886 -1.932 1.00 40.14 ATOM 128 CG LYS A1281 68.938 12.037 -1.144 1.00 45.84 ATOM 129 CD LYS A1281 69.242 12.713 0.170 1.00 45.49 ATOM 130 CE LYS A1281 70.271 11.988 1.031 1.00 46.86 ATOM 131 NZ LYS A1281 71.654 12.510 0.867 1.00 49.63 ATOM 132 N TYR A1282 68.469 13.326 -4.978 1.00 36.35 ATOM 133 CA TYR A1282 68.527 14.110 -6.184 1.00 32.41 ATOM 134 C TYR A1282 67.871 13.438 -7.346 1.00 33.66 ATOM 135 O TYR A1282 67.527 14.098 -8.347 1.00 28.62 ATOM 136 CB TYR A1282 69.974 14.508 -6.560 1.00 32.28 ATOM 137 CG TYR A1282 69.979 15.438 -7.752 1.00 33.82 ATOM 138 CD1 TYR A1282 69.439 16.739 -7.648 1.00 33.53 ATOM 139 CD2 TYR A1282 70.389 14.993 -9.022 1.00 33.99 ATOM 140 CE1 TYR A1282 69.353 17.570 -8.753 1.00 34.06 ATOM 141 CE2 TYR A1282 70.288 15.821 -10.127 1.00 36.14 ATOM 142 CZ TYR A1282 69.782 17.100 -9.983 1.00 36.03 ATOM 143 OH TYR A1282 69.724 17.888 -11.100 1.00 41.10 ATOM 144 N LEU A1283 67.691 12.120 -7.287 1.00 39.04 ATOM 145 CA LEU A1283 66.884 11.453 -8.331 1.00 41.79 ATOM 146 C LEU A1283 65.410 11.921 -8.236 1.00 43.51 ATOM 147 O LEU A1283 64.769 12.152 -9.251 1.00 48.01 ATOM 148 CB LEU A1283 66.992 9.944 -8.289 1.00 46.16 ATOM 149 CG LEU A1283 66.386 9.152 -9.476 1.00 53.71 ATOM 150 CD1 LEU A1283 66.995 7.745 -9.545 1.00 57.43 ATOM 151 CD2 LEU A1283 64.853 9.010 -9.529 1.00 44.40 ATOM 152 N VAL A1284 64.912 12.068 -7.020 1.00 38.96 ATOM 153 CA VAL A1284 63.609 12.672 -6.833 1.00 40.35 ATOM 154 C VAL A1284 63.599 14.110 -7.360 1.00 38.70 ATOM 155 O VAL A1284 62.774 14.463 -8.223 1.00 33.37 ATOM 156 CB VAL A1284 63.147 12.612 -5.362 1.00 42.33 ATOM 157 CG1 VAL A1284 61.723 13.149 -5.249 1.00 41.45 ATOM 158 CG2 VAL A1284 63.320 11.197 -4.820 1.00 44.00 ATOM 159 N GLN A1285 64.532 14.940 -6.868 1.00 36.81 ATOM 160 CA GLN A1285 64.557 16.357 -7.235 1.00 31.54 ATOM 161 C GLN A1285 64.655 16.575 -8.742 1.00 33.57 ATOM 162 O GLN A1285 64.000 17.470 -9.302 1.00 38.26 ATOM 163 CB GLN A1285 65.732 17.058 -6.585 1.00 28.76 ATOM 164 CG GLN A1285 65.770 17.149 -5.096 1.00 30.87 ATOM 165 CD GLN A1285 66.481 18.431 -4.622 1.00 32.35 ATOM 166 OE1 GLN A1285 65.887 19.242 -3.925 1.00 37.81 ATOM 167 NE2 GLN A1285 67.750 18.615 -4.999 1.00 31.58 ATOM 168 N HIS A1286 65.390 15.663 -9.402 1.00 32.17 ATOM 169 CA HIS A1286 65.565 15.692 -10.838 1.00 28.76 ATOM 170 C HIS A1286 64.246 15.696 -11.599 1.00 29.87 ATOM 171 O HIS A1286 64.201 16.139 -12.754 1.00 30.63 ATOM 172 CB HIS A1286 66.470 14.545 -11.303 1.00 25.63 ATOM 173 CG HIS A1286 66.358 14.208 -12.762 1.00 22.60 ATOM 174 ND1 HIS A1286 66.958 14.960 -13.745 1.00 23.17 ATOM 175 CD2 HIS A1286 65.671 13.224 -13.401 1.00 21.40 ATOM 176 CE1 HIS A1286 66.645 14.452 -14.934 1.00 22.04 ATOM 177 NE2 HIS A1286 65.906 13.373 -14.746 1.00 19.41 ATOM 178 N GLN A1287 63.159 15.247 -10.990 1.00 29.18 ATOM 179 CA GLN A1287 61.985 15.035 -11.814 1.00 33.24 ATOM 180 C GLN A1287 61.320 16.309 -12.309 1.00 33.16 ATOM 181 O GLN A1287 60.690 16.272 -13.332 1.00 37.86 ATOM 182 CB GLN A1287 61.017 14.115 -11.135 1.00 39.21 ATOM 183 CG GLN A1287 61.634 12.784 -10.667 1.00 43.23 ATOM 184 CD GLN A1287 62.256 11.925 -11.802 1.00 51.90 ATOM 185 OE1 GLN A1287 63.412 11.495 -11.694 1.00 57.05 ATOM 186 NE2 GLN A1287 61.509 11.724 -12.905 1.00 54.37 ATOM 187 N ARG A1288 61.598 17.416 -11.647 1.00 31.73 ATOM 188 CA ARG A1288 61.076 18.688 -12.069 1.00 31.13 ATOM 189 C ARG A1288 61.420 18.998 -13.518 1.00 36.99 ATOM 190 O ARG A1288 60.615 19.582 -14.250 1.00 47.21 ATOM 191 CB ARG A1288 61.512 19.792 -11.133 1.00 26.54 ATOM 192 CG ARG A1288 63.017 20.052 -11.130 1.00 24.42 ATOM 193 CD ARG A1288 63.425 20.999 -10.015 1.00 20.51 ATOM 194 NE ARG A1288 63.544 20.339 -8.736 1.00 18.08 ATOM 195 CZ ARG A1288 63.665 20.956 -7.587 1.00 18.02 ATOM 196 NH1 ARG A1288 63.714 22.281 -7.549 1.00 17.82 ATOM 197 NH2 ARG A1288 63.772 20.240 -6.461 1.00 17.99 ATOM 198 N VAL A1289 62.572 18.537 -13.971 1.00 35.69 ATOM 199 CA VAL A1289 62.959 18.541 -15.407 1.00 33.35 ATOM 200 C VAL A1289 61.822 18.107 -16.332 1.00 31.03 ATOM 201 O VAL A1289 61.645 18.636 -17.410 1.00 29.76 ATOM 202 CB VAL A1289 64.202 17.644 -15.629 1.00 33.09 ATOM 203 CG1 VAL A1289 64.490 17.467 -17.101 1.00 33.79 ATOM 204 CG2 VAL A1289 65.397 18.221 -14.891 1.00 29.85 ATOM 205 N HIS A1290 61.054 17.136 -15.921 1.00 34.30 ATOM 206 CA HIS A1290 60.043 16.574 -16.798 1.00 37.63 ATOM 207 C HIS A1290 58.666 17.231 -16.636 1.00 43.31 ATOM 208 O HIS A1290 57.838 17.038 -17.476 1.00 48.42 ATOM 209 CB HIS A1290 59.986 15.050 -16.650 1.00 30.45 ATOM 210 CG HIS A1290 61.309 14.359 -16.846 1.00 28.53 ATOM 211 ND1 HIS A1290 62.015 14.363 -18.040 1.00 29.05 ATOM 212 CD2 HIS A1290 62.050 13.632 -15.987 1.00 25.40 ATOM 213 CE1 HIS A1290 63.145 13.699 -17.884 1.00 27.67 ATOM 214 NE2 HIS A1290 63.182 13.219 -16.656 1.00 24.03 ATOM 215 N SER A1291 58.469 18.005 -15.566 1.00 46.32 ATOM 216 CA SER A1291 57.246 18.772 -15.404 1.00 45.01 ATOM 217 C SER A1291 57.420 20.117 -16.043 1.00 42.27 ATOM 218 O SER A1291 58.518 20.652 -16.059 1.00 37.53 ATOM 219 CB SER A1291 56.874 18.920 -13.933 1.00 43.33 ATOM 220 OG SER A1291 55.543 19.400 -13.788 1.00 45.64 ATOM 221 N ASP A1292 56.331 20.677 -16.529 1.00 44.74 ATOM 222 CA ASP A1292 56.320 22.060 -17.015 1.00 43.40 ATOM 223 C ASP A1292 56.108 23.076 -15.884 1.00 41.01 ATOM 224 O ASP A1292 56.280 24.266 -16.098 1.00 43.77 ATOM 225 CB ASP A1292 55.271 22.230 -18.092 1.00 45.56 ATOM 226 CG ASP A1292 55.725 21.731 -19.462 1.00 58.93 ATOM 227 OD1 ASP A1292 56.521 22.452 -20.131 1.00 60.40 ATOM 228 OD2 ASP A1292 55.243 20.642 -19.892 1.00 61.62 ATOM 229 ZN ZN A1403 65.083 11.932 -16.054 1.00 33.98 TER