HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 31 ALA ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN SEQRES 2 A 31 THR PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG SEQRES 3 A 31 LYS THR GLY HIS SER ATOM 1 N ALA A1323 74.382 43.708 -9.789 1.00 30.29 ATOM 2 CA ALA A1323 75.489 43.349 -8.960 1.00 31.51 ATOM 3 C ALA A1323 76.480 42.456 -9.707 1.00 31.80 ATOM 4 O ALA A1323 76.091 41.656 -10.585 1.00 28.76 ATOM 5 CB ALA A1323 75.024 42.673 -7.680 1.00 35.39 ATOM 6 N ARG A1324 77.767 42.621 -9.362 1.00 36.77 ATOM 7 CA ARG A1324 78.829 41.830 -9.941 1.00 43.55 ATOM 8 C ARG A1324 79.683 41.211 -8.851 1.00 49.80 ATOM 9 O ARG A1324 80.847 41.569 -8.713 1.00 59.86 ATOM 10 CB ARG A1324 79.670 42.645 -10.926 1.00 44.94 ATOM 11 CG ARG A1324 78.962 42.980 -12.214 1.00 53.36 ATOM 12 CD ARG A1324 79.916 43.645 -13.183 1.00 52.16 ATOM 13 NE ARG A1324 79.651 43.290 -14.573 1.00 58.13 ATOM 14 CZ ARG A1324 80.463 42.530 -15.325 1.00 63.18 ATOM 15 NH1 ARG A1324 80.175 42.255 -16.587 1.00 59.25 ATOM 16 NH2 ARG A1324 81.554 42.008 -14.760 1.00 62.22 ATOM 17 N PRO A1325 79.129 40.235 -8.113 1.00 48.83 ATOM 18 CA PRO A1325 79.792 39.796 -6.889 1.00 50.66 ATOM 19 C PRO A1325 81.133 39.085 -7.058 1.00 51.77 ATOM 20 O PRO A1325 82.010 39.298 -6.215 1.00 56.97 ATOM 21 CB PRO A1325 78.761 38.872 -6.234 1.00 51.87 ATOM 22 CG PRO A1325 77.888 38.423 -7.342 1.00 51.11 ATOM 23 CD PRO A1325 77.841 39.541 -8.316 1.00 47.10 ATOM 24 N TYR A1326 81.332 38.322 -8.128 1.00 46.61 ATOM 25 CA TYR A1326 82.565 37.556 -8.267 1.00 42.35 ATOM 26 C TYR A1326 83.727 38.419 -8.676 1.00 40.94 ATOM 27 O TYR A1326 83.745 38.917 -9.773 1.00 44.29 ATOM 28 CB TYR A1326 82.348 36.416 -9.268 1.00 39.38 ATOM 29 CG TYR A1326 81.177 35.571 -8.893 1.00 39.53 ATOM 30 CD1 TYR A1326 79.883 35.900 -9.347 1.00 40.59 ATOM 31 CD2 TYR A1326 81.337 34.450 -8.078 1.00 32.61 ATOM 32 CE1 TYR A1326 78.790 35.174 -8.974 1.00 40.31 ATOM 33 CE2 TYR A1326 80.233 33.698 -7.700 1.00 32.30 ATOM 34 CZ TYR A1326 78.964 34.060 -8.170 1.00 37.35 ATOM 35 OH TYR A1326 77.872 33.304 -7.828 1.00 38.76 ATOM 36 N VAL A1327 84.667 38.571 -7.759 1.00 41.11 ATOM 37 CA VAL A1327 85.787 39.514 -7.848 1.00 39.95 ATOM 38 C VAL A1327 87.082 38.728 -7.800 1.00 38.76 ATOM 39 O VAL A1327 87.308 37.949 -6.871 1.00 32.01 ATOM 40 CB VAL A1327 85.744 40.563 -6.704 1.00 39.35 ATOM 41 CG1 VAL A1327 84.660 41.598 -6.927 1.00 39.93 ATOM 42 CG2 VAL A1327 85.468 39.916 -5.341 1.00 42.36 ATOM 43 N CYS A1328 87.922 38.880 -8.810 1.00 45.25 ATOM 44 CA CYS A1328 89.135 38.072 -8.919 1.00 47.63 ATOM 45 C CYS A1328 90.125 38.409 -7.816 1.00 53.67 ATOM 46 O CYS A1328 90.414 39.617 -7.584 1.00 47.15 ATOM 47 CB CYS A1328 89.774 38.262 -10.288 1.00 50.07 ATOM 48 SG CYS A1328 91.063 37.071 -10.618 1.00 51.05 ATOM 49 N ALA A1329 90.555 37.384 -7.055 1.00 61.66 ATOM 50 CA ALA A1329 91.437 37.613 -5.898 1.00 62.41 ATOM 51 C ALA A1329 92.923 37.697 -6.277 1.00 69.24 ATOM 52 O ALA A1329 93.779 37.997 -5.447 1.00 64.88 ATOM 53 CB ALA A1329 91.205 36.577 -4.814 1.00 58.07 ATOM 54 N GLU A1330 93.215 37.429 -7.545 1.00 68.96 ATOM 55 CA GLU A1330 94.573 37.409 -8.079 1.00 71.63 ATOM 56 C GLU A1330 95.112 38.817 -8.275 1.00 76.20 ATOM 57 O GLU A1330 94.420 39.664 -8.868 1.00 73.58 ATOM 58 CB GLU A1330 94.559 36.673 -9.424 1.00 68.36 ATOM 59 CG GLU A1330 95.922 36.493 -10.070 1.00 67.00 ATOM 60 CD GLU A1330 96.758 35.413 -9.365 1.00 62.11 ATOM 61 OE1 GLU A1330 96.368 34.914 -8.291 1.00 55.30 ATOM 62 OE2 GLU A1330 97.804 34.995 -9.910 1.00 55.29 ATOM 63 N PRO A1331 96.323 39.104 -7.756 1.00 80.21 ATOM 64 CA PRO A1331 96.899 40.456 -7.903 1.00 78.24 ATOM 65 C PRO A1331 97.109 40.841 -9.379 1.00 84.79 ATOM 66 O PRO A1331 97.485 39.990 -10.187 1.00 82.96 ATOM 67 CB PRO A1331 98.249 40.359 -7.183 1.00 74.26 ATOM 68 CG PRO A1331 98.429 38.954 -6.755 1.00 67.07 ATOM 69 CD PRO A1331 97.360 38.128 -7.392 1.00 79.61 ATOM 70 N ASP A1332 96.830 42.099 -9.698 1.00 90.29 ATOM 71 CA ASP A1332 96.875 42.617 -11.068 1.00 96.65 ATOM 72 C ASP A1332 95.909 41.886 -12.004 1.00 97.83 ATOM 73 O ASP A1332 96.178 41.739 -13.208 1.00103.98 ATOM 74 CB ASP A1332 98.300 42.630 -11.664 1.00103.84 ATOM 75 CG ASP A1332 99.253 43.554 -10.924 1.00108.61 ATOM 76 OD1 ASP A1332 99.190 44.790 -11.105 1.00103.18 ATOM 77 OD2 ASP A1332 100.088 43.020 -10.157 1.00115.76 ATOM 78 N CYS A1333 94.771 41.458 -11.467 1.00 99.64 ATOM 79 CA CYS A1333 93.650 41.071 -12.315 1.00 88.68 ATOM 80 C CYS A1333 92.494 42.061 -12.128 1.00 78.87 ATOM 81 O CYS A1333 92.385 43.039 -12.849 1.00 73.70 ATOM 82 CB CYS A1333 93.224 39.617 -12.127 1.00 88.26 ATOM 83 SG CYS A1333 91.920 39.168 -13.265 1.00 90.16 ATOM 84 N GLY A1334 91.638 41.786 -11.156 1.00 78.42 ATOM 85 CA GLY A1334 90.526 42.659 -10.825 1.00 77.00 ATOM 86 C GLY A1334 89.473 42.824 -11.901 1.00 74.26 ATOM 87 O GLY A1334 88.871 43.887 -11.972 1.00 68.95 ATOM 88 N GLN A1335 89.150 41.777 -12.651 1.00 71.61 ATOM 89 CA GLN A1335 87.864 41.732 -13.347 1.00 66.18 ATOM 90 C GLN A1335 86.801 41.235 -12.376 1.00 65.85 ATOM 91 O GLN A1335 87.101 40.676 -11.320 1.00 71.55 ATOM 92 CB GLN A1335 87.890 40.810 -14.548 1.00 64.76 ATOM 93 CG GLN A1335 88.833 41.165 -15.656 1.00 64.90 ATOM 94 CD GLN A1335 89.466 39.912 -16.230 1.00 63.99 ATOM 95 OE1 GLN A1335 88.953 39.296 -17.175 1.00 61.68 ATOM 96 NE2 GLN A1335 90.590 39.514 -15.635 1.00 64.80 ATOM 97 N THR A1336 85.554 41.490 -12.733 1.00 60.58 ATOM 98 CA THR A1336 84.407 41.039 -11.967 1.00 53.04 ATOM 99 C THR A1336 83.428 40.295 -12.854 1.00 54.88 ATOM 100 O THR A1336 83.490 40.456 -14.083 1.00 59.59 ATOM 101 CB THR A1336 83.683 42.173 -11.246 1.00 51.87 ATOM 102 OG1 THR A1336 83.021 42.969 -12.217 1.00 56.38 ATOM 103 CG2 THR A1336 84.656 43.051 -10.484 1.00 48.29 ATOM 104 N PHE A1337 82.580 39.447 -12.265 1.00 45.25 ATOM 105 CA PHE A1337 81.584 38.709 -13.044 1.00 41.64 ATOM 106 C PHE A1337 80.242 38.615 -12.363 1.00 40.87 ATOM 107 O PHE A1337 80.173 38.457 -11.146 1.00 48.37 ATOM 108 CB PHE A1337 82.098 37.311 -13.376 1.00 41.08 ATOM 109 CG PHE A1337 83.462 37.303 -13.943 1.00 41.65 ATOM 110 CD1 PHE A1337 84.592 37.263 -13.137 1.00 41.57 ATOM 111 CD2 PHE A1337 83.610 37.266 -15.307 1.00 41.85 ATOM 112 CE1 PHE A1337 85.836 37.287 -13.672 1.00 45.08 ATOM 113 CE2 PHE A1337 84.872 37.228 -15.886 1.00 45.17 ATOM 114 CZ PHE A1337 85.985 37.239 -15.055 1.00 49.19 ATOM 115 N ARG A1338 79.186 38.701 -13.158 1.00 33.67 ATOM 116 CA ARG A1338 77.827 38.607 -12.646 1.00 31.46 ATOM 117 C ARG A1338 77.483 37.150 -12.308 1.00 25.61 ATOM 118 O ARG A1338 76.874 36.896 -11.279 1.00 24.52 ATOM 119 CB ARG A1338 76.842 39.179 -13.686 1.00 32.55 ATOM 120 CG ARG A1338 75.390 39.214 -13.209 1.00 37.54 ATOM 121 CD ARG A1338 74.610 40.333 -13.885 1.00 37.11 ATOM 122 NE ARG A1338 75.177 41.672 -13.618 1.00 40.24 ATOM 123 CZ ARG A1338 75.589 42.532 -14.561 1.00 42.29 ATOM 124 NH1 ARG A1338 75.497 42.153 -15.822 1.00 40.36 ATOM 125 NH2 ARG A1338 76.096 43.710 -14.247 1.00 44.83 ATOM 126 N PHE A1339 77.875 36.231 -13.182 1.00 25.77 ATOM 127 CA PHE A1339 77.529 34.824 -13.047 1.00 25.38 ATOM 128 C PHE A1339 78.722 33.933 -12.780 1.00 24.72 ATOM 129 O PHE A1339 79.837 34.250 -13.189 1.00 25.16 ATOM 130 CB PHE A1339 76.790 34.336 -14.300 1.00 23.55 ATOM 131 CG PHE A1339 75.760 35.293 -14.796 1.00 21.54 ATOM 132 CD1 PHE A1339 76.086 36.296 -15.697 1.00 20.81 ATOM 133 CD2 PHE A1339 74.458 35.189 -14.337 1.00 20.90 ATOM 134 CE1 PHE A1339 75.105 37.187 -16.140 1.00 20.53 ATOM 135 CE2 PHE A1339 73.477 36.114 -14.744 1.00 20.89 ATOM 136 CZ PHE A1339 73.803 37.097 -15.656 1.00 19.96 ATOM 137 N VAL A1340 78.471 32.814 -12.115 1.00 22.26 ATOM 138 CA VAL A1340 79.530 31.862 -11.752 1.00 24.15 ATOM 139 C VAL A1340 80.196 31.281 -12.972 1.00 24.23 ATOM 140 O VAL A1340 81.416 31.139 -13.004 1.00 25.76 ATOM 141 CB VAL A1340 78.992 30.679 -10.887 1.00 24.41 ATOM 142 CG1 VAL A1340 78.598 31.107 -9.528 1.00 20.94 ATOM 143 CG2 VAL A1340 77.786 30.029 -11.534 1.00 26.36 ATOM 144 N SER A1341 79.388 30.947 -13.969 1.00 27.67 ATOM 145 CA SER A1341 79.879 30.356 -15.205 1.00 30.57 ATOM 146 C SER A1341 81.047 31.176 -15.749 1.00 34.62 ATOM 147 O SER A1341 82.114 30.606 -16.043 1.00 45.33 ATOM 148 CB SER A1341 78.761 30.273 -16.241 1.00 29.31 ATOM 149 OG SER A1341 78.971 29.190 -17.126 1.00 32.03 ATOM 150 N ASP A1342 80.870 32.486 -15.834 1.00 32.81 ATOM 151 CA ASP A1342 81.898 33.357 -16.349 1.00 32.84 ATOM 152 C ASP A1342 83.168 33.269 -15.506 1.00 36.46 ATOM 153 O ASP A1342 84.264 33.157 -16.053 1.00 45.36 ATOM 154 CB ASP A1342 81.363 34.796 -16.433 1.00 32.64 ATOM 155 CG ASP A1342 80.119 34.912 -17.270 1.00 32.70 ATOM 156 OD1 ASP A1342 79.947 34.044 -18.155 1.00 33.77 ATOM 157 OD2 ASP A1342 79.334 35.876 -17.043 1.00 33.37 ATOM 158 N PHE A1343 83.017 33.248 -14.187 1.00 37.86 ATOM 159 CA PHE A1343 84.195 33.191 -13.307 1.00 40.91 ATOM 160 C PHE A1343 84.949 31.862 -13.400 1.00 45.18 ATOM 161 O PHE A1343 86.186 31.833 -13.342 1.00 44.59 ATOM 162 CB PHE A1343 83.830 33.480 -11.867 1.00 36.12 ATOM 163 CG PHE A1343 85.015 33.698 -10.944 1.00 40.97 ATOM 164 CD1 PHE A1343 86.212 34.322 -11.361 1.00 44.18 ATOM 165 CD2 PHE A1343 84.886 33.393 -9.573 1.00 39.12 ATOM 166 CE1 PHE A1343 87.256 34.539 -10.479 1.00 45.32 ATOM 167 CE2 PHE A1343 85.933 33.642 -8.669 1.00 39.03 ATOM 168 CZ PHE A1343 87.116 34.218 -9.121 1.00 42.67 ATOM 169 N SER A1344 84.219 30.774 -13.623 1.00 50.40 ATOM 170 CA SER A1344 84.836 29.465 -13.692 1.00 52.88 ATOM 171 C SER A1344 85.549 29.258 -15.019 1.00 53.93 ATOM 172 O SER A1344 86.726 28.837 -15.006 1.00 54.38 ATOM 173 CB SER A1344 83.796 28.372 -13.491 1.00 56.62 ATOM 174 OG SER A1344 83.183 28.464 -12.227 1.00 67.11 ATOM 175 N ARG A1345 84.892 29.643 -16.123 1.00 49.49 ATOM 176 CA ARG A1345 85.583 29.689 -17.403 1.00 48.96 ATOM 177 C ARG A1345 86.829 30.570 -17.301 1.00 52.63 ATOM 178 O ARG A1345 87.861 30.245 -17.843 1.00 61.24 ATOM 179 CB ARG A1345 84.621 30.131 -18.517 1.00 49.28 ATOM 180 CG ARG A1345 85.178 30.978 -19.648 1.00 46.01 ATOM 181 CD ARG A1345 83.977 31.422 -20.480 1.00 42.00 ATOM 182 NE ARG A1345 83.603 30.329 -21.378 1.00 47.10 ATOM 183 CZ ARG A1345 83.840 30.287 -22.702 1.00 45.76 ATOM 184 NH1 ARG A1345 84.439 31.307 -23.327 1.00 42.60 ATOM 185 NH2 ARG A1345 83.471 29.214 -23.403 1.00 41.25 ATOM 186 N HIS A1346 86.751 31.652 -16.534 1.00 51.47 ATOM 187 CA HIS A1346 87.840 32.595 -16.404 1.00 48.17 ATOM 188 C HIS A1346 89.047 31.948 -15.749 1.00 47.69 ATOM 189 O HIS A1346 90.145 31.929 -16.339 1.00 48.88 ATOM 190 CB HIS A1346 87.399 33.824 -15.628 1.00 52.22 ATOM 191 CG HIS A1346 88.510 34.771 -15.318 1.00 54.37 ATOM 192 ND1 HIS A1346 89.258 34.677 -14.162 1.00 54.37 ATOM 193 CD2 HIS A1346 88.959 35.852 -15.987 1.00 56.53 ATOM 194 CE1 HIS A1346 90.147 35.651 -14.153 1.00 58.52 ATOM 195 NE2 HIS A1346 89.988 36.375 -15.249 1.00 59.56 ATOM 196 N LYS A1347 88.916 31.441 -14.517 1.00 47.49 ATOM 197 CA LYS A1347 90.111 30.841 -13.882 1.00 50.45 ATOM 198 C LYS A1347 90.560 29.608 -14.650 1.00 59.23 ATOM 199 O LYS A1347 91.714 29.316 -14.673 1.00 70.71 ATOM 200 CB LYS A1347 89.913 30.599 -12.393 1.00 49.12 ATOM 201 CG LYS A1347 88.696 29.833 -11.955 1.00 46.64 ATOM 202 CD LYS A1347 88.104 30.560 -10.727 1.00 41.05 ATOM 203 CE LYS A1347 87.168 29.682 -9.905 1.00 41.97 ATOM 204 NZ LYS A1347 86.822 30.258 -8.579 1.00 41.16 ATOM 205 N ARG A1348 89.674 28.856 -15.272 1.00 62.49 ATOM 206 CA ARG A1348 90.084 27.841 -16.253 1.00 63.26 ATOM 207 C ARG A1348 91.118 28.339 -17.287 1.00 69.87 ATOM 208 O ARG A1348 92.182 27.793 -17.386 1.00 70.48 ATOM 209 CB ARG A1348 88.826 27.316 -16.970 1.00 54.86 ATOM 210 CG ARG A1348 89.117 26.527 -18.214 1.00 52.38 ATOM 211 CD ARG A1348 88.061 25.417 -18.340 1.00 58.32 ATOM 212 NE ARG A1348 86.819 25.783 -17.647 1.00 61.96 ATOM 213 CZ ARG A1348 85.710 26.171 -18.248 1.00 56.40 ATOM 214 NH1 ARG A1348 84.651 26.488 -17.523 1.00 60.78 ATOM 215 NH2 ARG A1348 85.620 26.187 -19.571 1.00 51.10 ATOM 216 N LYS A1349 90.779 29.447 -17.967 1.00 77.95 ATOM 217 CA LYS A1349 91.638 30.008 -18.993 1.00 71.86 ATOM 218 C LYS A1349 92.693 31.000 -18.472 1.00 77.37 ATOM 219 O LYS A1349 93.456 31.531 -19.266 1.00 81.64 ATOM 220 CB LYS A1349 90.836 30.583 -20.188 1.00 64.72 ATOM 221 CG LYS A1349 90.401 29.526 -21.203 1.00 74.38 ATOM 222 CD LYS A1349 88.915 29.119 -21.135 1.00 72.69 ATOM 223 CE LYS A1349 88.642 27.821 -21.864 1.00 64.70 ATOM 224 NZ LYS A1349 87.185 27.505 -21.936 1.00 54.52 ATOM 225 N THR A1350 92.808 31.157 -17.169 1.00 78.78 ATOM 226 CA THR A1350 93.881 31.953 -16.567 1.00 74.90 ATOM 227 C THR A1350 94.692 31.223 -15.470 1.00 80.25 ATOM 228 O THR A1350 95.893 31.423 -15.308 1.00 83.77 ATOM 229 CB THR A1350 93.390 33.326 -16.056 1.00 72.59 ATOM 230 OG1 THR A1350 92.633 33.209 -14.842 1.00 64.94 ATOM 231 CG2 THR A1350 92.555 34.080 -17.071 1.00 75.87 ATOM 232 N GLY A1351 93.998 30.403 -14.690 1.00 74.65 ATOM 233 CA GLY A1351 94.581 29.692 -13.562 1.00 69.26 ATOM 234 C GLY A1351 94.650 30.497 -12.271 1.00 73.86 ATOM 235 O GLY A1351 95.357 30.095 -11.321 1.00 72.21 ATOM 236 N HIS A1352 93.843 31.554 -12.194 1.00 69.78 ATOM 237 CA HIS A1352 93.850 32.393 -10.973 1.00 71.22 ATOM 238 C HIS A1352 93.052 31.762 -9.836 1.00 73.96 ATOM 239 O HIS A1352 91.987 31.196 -10.071 1.00 80.75 ATOM 240 CB HIS A1352 93.315 33.779 -11.214 1.00 71.32 ATOM 241 CG HIS A1352 94.004 34.547 -12.303 1.00 71.60 ATOM 242 ND1 HIS A1352 93.561 35.782 -12.731 1.00 70.93 ATOM 243 CD2 HIS A1352 95.102 34.276 -13.039 1.00 72.56 ATOM 244 CE1 HIS A1352 94.332 36.219 -13.705 1.00 70.97 ATOM 245 NE2 HIS A1352 95.271 35.317 -13.919 1.00 74.56 ATOM 246 N SER A1353 93.645 31.787 -8.646 1.00 75.34 ATOM 247 CA SER A1353 93.057 31.150 -7.431 1.00 79.38 ATOM 248 C SER A1353 92.793 29.633 -7.568 1.00 79.75 ATOM 249 O SER A1353 93.665 28.797 -7.383 1.00 75.52 ATOM 250 CB SER A1353 91.744 31.836 -7.025 1.00 78.16 ATOM 251 OG SER A1353 91.828 33.251 -7.108 1.00 74.50 ATOM 252 ZN ZN A1402 91.832 37.036 -12.683 1.00 62.97 TER