HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN B 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 B 30 ASP ARG PRO LEU LYS CYS PRO TRP LYS GLY CYS LYS MET SEQRES 2 B 30 THR PHE LYS TRP ALA TRP SER ARG THR GLU HIS ILE ARG SEQRES 3 B 30 VAL HIS THR GLY ATOM 1 N ASP B1293 94.579 3.848 -16.274 1.00 31.66 ATOM 2 CA ASP B1293 93.899 4.330 -17.447 1.00 34.59 ATOM 3 C ASP B1293 92.543 3.680 -17.609 1.00 37.06 ATOM 4 O ASP B1293 92.398 2.488 -17.345 1.00 42.27 ATOM 5 CB ASP B1293 94.658 3.987 -18.722 1.00 34.25 ATOM 6 CG ASP B1293 95.907 4.800 -18.908 1.00 39.22 ATOM 7 OD1 ASP B1293 96.387 5.427 -17.929 1.00 40.41 ATOM 8 OD2 ASP B1293 96.402 4.794 -20.062 1.00 39.67 ATOM 9 N ARG B1294 91.544 4.488 -17.990 1.00 33.57 ATOM 10 CA ARG B1294 90.228 3.979 -18.268 1.00 30.05 ATOM 11 C ARG B1294 89.767 4.599 -19.581 1.00 30.44 ATOM 12 O ARG B1294 88.792 5.353 -19.611 1.00 34.59 ATOM 13 CB ARG B1294 89.233 4.188 -17.115 1.00 27.82 ATOM 14 CG ARG B1294 89.728 3.573 -15.811 1.00 28.07 ATOM 15 CD ARG B1294 88.836 3.728 -14.601 1.00 28.69 ATOM 16 NE ARG B1294 87.544 3.025 -14.717 1.00 30.30 ATOM 17 CZ ARG B1294 87.337 1.736 -14.418 1.00 32.67 ATOM 18 NH1 ARG B1294 88.367 0.939 -14.069 1.00 35.33 ATOM 19 NH2 ARG B1294 86.099 1.231 -14.516 1.00 29.36 ATOM 20 N PRO B1295 90.431 4.242 -20.707 1.00 27.36 ATOM 21 CA PRO B1295 90.115 4.788 -22.019 1.00 25.16 ATOM 22 C PRO B1295 88.636 4.843 -22.377 1.00 24.82 ATOM 23 O PRO B1295 88.182 5.899 -22.873 1.00 33.33 ATOM 24 CB PRO B1295 90.815 3.833 -23.008 1.00 22.31 ATOM 25 CG PRO B1295 91.435 2.760 -22.257 1.00 23.37 ATOM 26 CD PRO B1295 91.479 3.207 -20.832 1.00 27.05 ATOM 27 N LEU B1296 87.872 3.793 -22.149 1.00 20.37 ATOM 28 CA LEU B1296 86.511 3.773 -22.673 1.00 17.93 ATOM 29 C LEU B1296 85.544 4.569 -21.820 1.00 16.27 ATOM 30 O LEU B1296 85.623 4.557 -20.624 1.00 15.30 ATOM 31 CB LEU B1296 86.033 2.341 -22.882 1.00 17.07 ATOM 32 CG LEU B1296 87.006 1.359 -23.494 1.00 15.30 ATOM 33 CD1 LEU B1296 86.318 -0.002 -23.592 1.00 14.95 ATOM 34 CD2 LEU B1296 87.464 1.871 -24.857 1.00 14.63 ATOM 35 N LYS B1297 84.708 5.333 -22.496 1.00 17.12 ATOM 36 CA LYS B1297 83.786 6.270 -21.862 1.00 18.80 ATOM 37 C LYS B1297 82.370 5.785 -21.950 1.00 19.17 ATOM 38 O LYS B1297 81.984 5.135 -22.892 1.00 19.10 ATOM 39 CB LYS B1297 83.958 7.679 -22.483 1.00 19.29 ATOM 40 CG LYS B1297 85.422 8.113 -22.547 1.00 21.28 ATOM 41 CD LYS B1297 85.859 8.536 -21.122 1.00 24.96 ATOM 42 CE LYS B1297 87.319 8.270 -20.762 1.00 24.77 ATOM 43 NZ LYS B1297 87.645 8.835 -19.418 1.00 25.20 ATOM 44 N CYS B1298 81.562 6.100 -20.943 1.00 19.55 ATOM 45 CA CYS B1298 80.102 5.962 -21.084 1.00 22.15 ATOM 46 C CYS B1298 79.656 6.940 -22.159 1.00 25.98 ATOM 47 O CYS B1298 80.130 8.082 -22.192 1.00 32.65 ATOM 48 CB CYS B1298 79.394 6.274 -19.795 1.00 23.26 ATOM 49 SG CYS B1298 77.616 5.939 -19.917 1.00 21.58 ATOM 50 N PRO B1299 78.769 6.493 -23.056 1.00 25.78 ATOM 51 CA PRO B1299 78.288 7.380 -24.115 1.00 24.81 ATOM 52 C PRO B1299 77.092 8.251 -23.674 1.00 26.39 ATOM 53 O PRO B1299 76.606 9.071 -24.459 1.00 27.58 ATOM 54 CB PRO B1299 77.876 6.396 -25.206 1.00 24.75 ATOM 55 CG PRO B1299 77.482 5.150 -24.477 1.00 24.26 ATOM 56 CD PRO B1299 78.327 5.094 -23.244 1.00 25.67 ATOM 57 N TRP B1300 76.584 8.027 -22.464 1.00 25.25 ATOM 58 CA TRP B1300 75.368 8.684 -22.038 1.00 27.81 ATOM 59 C TRP B1300 75.643 10.054 -21.509 1.00 33.21 ATOM 60 O TRP B1300 76.589 10.248 -20.751 1.00 30.79 ATOM 61 CB TRP B1300 74.685 7.921 -20.964 1.00 26.81 ATOM 62 CG TRP B1300 73.213 7.992 -21.017 1.00 25.60 ATOM 63 CD1 TRP B1300 72.418 8.795 -20.288 1.00 25.41 ATOM 64 CD2 TRP B1300 72.353 7.183 -21.822 1.00 24.04 ATOM 65 NE1 TRP B1300 71.091 8.550 -20.581 1.00 25.59 ATOM 66 CE2 TRP B1300 71.026 7.563 -21.525 1.00 23.99 ATOM 67 CE3 TRP B1300 72.574 6.167 -22.766 1.00 23.09 ATOM 68 CZ2 TRP B1300 69.914 6.971 -22.145 1.00 24.01 ATOM 69 CZ3 TRP B1300 71.461 5.561 -23.377 1.00 21.11 ATOM 70 CH2 TRP B1300 70.153 5.975 -23.063 1.00 22.24 ATOM 71 N LYS B1301 74.861 11.046 -21.939 1.00 39.88 ATOM 72 CA LYS B1301 75.075 12.431 -21.524 1.00 37.29 ATOM 73 C LYS B1301 75.078 12.538 -19.997 1.00 37.96 ATOM 74 O LYS B1301 74.198 11.993 -19.308 1.00 34.75 ATOM 75 CB LYS B1301 74.042 13.361 -22.170 1.00 36.04 ATOM 76 CG LYS B1301 74.445 13.873 -23.545 1.00 36.32 ATOM 77 CD LYS B1301 73.325 14.587 -24.296 1.00 34.03 ATOM 78 CE LYS B1301 73.828 15.203 -25.599 1.00 37.18 ATOM 79 NZ LYS B1301 72.775 15.403 -26.652 1.00 35.27 ATOM 80 N GLY B1302 76.079 13.242 -19.483 1.00 41.37 ATOM 81 CA GLY B1302 76.195 13.511 -18.068 1.00 40.98 ATOM 82 C GLY B1302 76.525 12.325 -17.191 1.00 46.50 ATOM 83 O GLY B1302 76.454 12.466 -15.955 1.00 47.38 ATOM 84 N CYS B1303 76.873 11.180 -17.794 1.00 43.65 ATOM 85 CA CYS B1303 77.377 10.058 -16.990 1.00 40.08 ATOM 86 C CYS B1303 78.894 10.121 -17.005 1.00 43.21 ATOM 87 O CYS B1303 79.493 10.302 -18.078 1.00 47.47 ATOM 88 CB CYS B1303 76.887 8.733 -17.538 1.00 36.95 ATOM 89 SG CYS B1303 77.579 7.299 -16.703 1.00 29.85 ATOM 90 N LYS B1304 79.523 9.997 -15.839 1.00 39.83 ATOM 91 CA LYS B1304 80.966 10.099 -15.734 1.00 42.22 ATOM 92 C LYS B1304 81.687 8.749 -15.744 1.00 41.65 ATOM 93 O LYS B1304 82.935 8.729 -15.694 1.00 42.42 ATOM 94 CB LYS B1304 81.360 10.871 -14.480 1.00 49.12 ATOM 95 CG LYS B1304 80.915 12.318 -14.435 1.00 51.97 ATOM 96 CD LYS B1304 79.626 12.467 -13.611 1.00 52.18 ATOM 97 CE LYS B1304 78.857 13.775 -13.945 1.00 52.37 ATOM 98 NZ LYS B1304 77.359 13.702 -14.087 1.00 47.21 ATOM 99 N MET B1305 80.929 7.649 -15.829 1.00 37.08 ATOM 100 CA MET B1305 81.512 6.329 -15.772 1.00 35.52 ATOM 101 C MET B1305 82.523 6.088 -16.918 1.00 33.63 ATOM 102 O MET B1305 82.345 6.533 -18.016 1.00 34.42 ATOM 103 CB MET B1305 80.435 5.256 -15.805 1.00 37.06 ATOM 104 CG MET B1305 80.901 3.842 -15.504 1.00 39.39 ATOM 105 SD MET B1305 81.398 3.561 -13.817 1.00 44.56 ATOM 106 CE MET B1305 79.849 4.010 -13.013 1.00 47.79 ATOM 107 N THR B1306 83.576 5.352 -16.594 1.00 30.20 ATOM 108 CA THR B1306 84.625 4.961 -17.505 1.00 28.74 ATOM 109 C THR B1306 84.892 3.477 -17.368 1.00 27.62 ATOM 110 O THR B1306 84.488 2.870 -16.390 1.00 28.74 ATOM 111 CB THR B1306 85.930 5.666 -17.139 1.00 28.92 ATOM 112 OG1 THR B1306 86.177 5.500 -15.740 1.00 25.29 ATOM 113 CG2 THR B1306 85.859 7.154 -17.504 1.00 31.39 ATOM 114 N PHE B1307 85.546 2.891 -18.358 1.00 24.48 ATOM 115 CA PHE B1307 85.881 1.476 -18.331 1.00 21.81 ATOM 116 C PHE B1307 87.238 1.228 -18.974 1.00 21.78 ATOM 117 O PHE B1307 87.845 2.106 -19.609 1.00 20.05 ATOM 118 CB PHE B1307 84.831 0.638 -19.042 1.00 19.55 ATOM 119 CG PHE B1307 83.463 1.024 -18.694 1.00 19.17 ATOM 120 CD1 PHE B1307 82.842 2.106 -19.304 1.00 19.57 ATOM 121 CD2 PHE B1307 82.774 0.292 -17.762 1.00 18.45 ATOM 122 CE1 PHE B1307 81.555 2.464 -18.928 1.00 20.14 ATOM 123 CE2 PHE B1307 81.451 0.593 -17.444 1.00 18.47 ATOM 124 CZ PHE B1307 80.853 1.692 -18.012 1.00 19.17 ATOM 125 N LYS B1308 87.720 0.007 -18.748 1.00 21.50 ATOM 126 CA LYS B1308 88.822 -0.566 -19.488 1.00 18.48 ATOM 127 C LYS B1308 88.301 -1.621 -20.456 1.00 17.51 ATOM 128 O LYS B1308 89.034 -1.961 -21.427 1.00 17.66 ATOM 129 CB LYS B1308 89.788 -1.186 -18.507 1.00 19.36 ATOM 130 CG LYS B1308 90.340 -0.274 -17.395 1.00 21.13 ATOM 131 CD LYS B1308 91.241 -1.089 -16.465 1.00 21.55 ATOM 132 CE LYS B1308 91.807 -0.276 -15.326 1.00 21.82 ATOM 133 NZ LYS B1308 92.627 -1.167 -14.491 1.00 23.28 ATOM 134 N TRP B1309 87.068 -2.095 -20.280 1.00 16.07 ATOM 135 CA TRP B1309 86.601 -3.210 -21.135 1.00 16.95 ATOM 136 C TRP B1309 85.331 -2.854 -21.832 1.00 16.73 ATOM 137 O TRP B1309 84.367 -2.439 -21.205 1.00 17.47 ATOM 138 CB TRP B1309 86.358 -4.577 -20.410 1.00 17.62 ATOM 139 CG TRP B1309 87.450 -5.073 -19.588 1.00 18.32 ATOM 140 CD1 TRP B1309 87.519 -5.017 -18.225 1.00 18.63 ATOM 141 CD2 TRP B1309 88.667 -5.633 -20.038 1.00 18.74 ATOM 142 NE1 TRP B1309 88.702 -5.588 -17.785 1.00 19.02 ATOM 143 CE2 TRP B1309 89.447 -5.925 -18.893 1.00 18.91 ATOM 144 CE3 TRP B1309 89.182 -5.937 -21.301 1.00 22.39 ATOM 145 CZ2 TRP B1309 90.689 -6.542 -18.972 1.00 19.04 ATOM 146 CZ3 TRP B1309 90.466 -6.524 -21.375 1.00 22.75 ATOM 147 CH2 TRP B1309 91.196 -6.801 -20.209 1.00 22.01 ATOM 148 N ALA B1310 85.301 -3.064 -23.148 1.00 16.36 ATOM 149 CA ALA B1310 84.126 -2.863 -23.962 1.00 17.29 ATOM 150 C ALA B1310 82.878 -3.565 -23.402 1.00 19.11 ATOM 151 O ALA B1310 81.811 -3.007 -23.419 1.00 20.17 ATOM 152 CB ALA B1310 84.390 -3.377 -25.376 1.00 15.25 ATOM 153 N TRP B1311 83.000 -4.778 -22.887 1.00 18.12 ATOM 154 CA TRP B1311 81.805 -5.485 -22.514 1.00 16.58 ATOM 155 C TRP B1311 81.193 -4.902 -21.246 1.00 18.56 ATOM 156 O TRP B1311 79.959 -4.806 -21.102 1.00 18.48 ATOM 157 CB TRP B1311 82.084 -6.996 -22.332 1.00 16.53 ATOM 158 CG TRP B1311 80.844 -7.673 -21.958 1.00 15.68 ATOM 159 CD1 TRP B1311 80.480 -8.062 -20.713 1.00 15.80 ATOM 160 CD2 TRP B1311 79.728 -7.958 -22.818 1.00 14.40 ATOM 161 NE1 TRP B1311 79.209 -8.606 -20.743 1.00 15.20 ATOM 162 CE2 TRP B1311 78.735 -8.533 -22.032 1.00 15.04 ATOM 163 CE3 TRP B1311 79.471 -7.744 -24.171 1.00 14.27 ATOM 164 CZ2 TRP B1311 77.512 -8.921 -22.556 1.00 15.12 ATOM 165 CZ3 TRP B1311 78.254 -8.123 -24.679 1.00 14.62 ATOM 166 CH2 TRP B1311 77.295 -8.716 -23.888 1.00 13.55 ATOM 167 N SER B1312 82.046 -4.481 -20.320 1.00 17.86 ATOM 168 CA SER B1312 81.577 -3.665 -19.211 1.00 19.08 ATOM 169 C SER B1312 80.731 -2.486 -19.727 1.00 19.56 ATOM 170 O SER B1312 79.607 -2.274 -19.243 1.00 19.90 ATOM 171 CB SER B1312 82.724 -3.169 -18.377 1.00 18.97 ATOM 172 OG SER B1312 82.820 -4.018 -17.265 1.00 22.29 ATOM 173 N ARG B1313 81.268 -1.765 -20.711 1.00 18.76 ATOM 174 CA ARG B1313 80.553 -0.638 -21.290 1.00 20.43 ATOM 175 C ARG B1313 79.201 -1.067 -21.886 1.00 21.00 ATOM 176 O ARG B1313 78.174 -0.543 -21.548 1.00 24.94 ATOM 177 CB ARG B1313 81.436 0.059 -22.322 1.00 19.99 ATOM 178 CG ARG B1313 80.931 1.428 -22.759 1.00 21.40 ATOM 179 CD ARG B1313 81.815 1.856 -23.934 1.00 22.49 ATOM 180 NE ARG B1313 81.364 2.981 -24.738 1.00 24.95 ATOM 181 CZ ARG B1313 80.563 2.914 -25.799 1.00 25.82 ATOM 182 NH1 ARG B1313 80.051 1.752 -26.179 1.00 26.53 ATOM 183 NH2 ARG B1313 80.264 4.029 -26.469 1.00 26.94 ATOM 184 N THR B1314 79.242 -2.011 -22.797 1.00 20.18 ATOM 185 CA THR B1314 78.031 -2.560 -23.400 1.00 20.05 ATOM 186 C THR B1314 76.947 -2.825 -22.375 1.00 20.06 ATOM 187 O THR B1314 75.774 -2.435 -22.583 1.00 19.13 ATOM 188 CB THR B1314 78.359 -3.818 -24.188 1.00 19.96 ATOM 189 OG1 THR B1314 79.252 -3.458 -25.243 1.00 19.44 ATOM 190 CG2 THR B1314 77.105 -4.428 -24.810 1.00 19.53 ATOM 191 N GLU B1315 77.300 -3.462 -21.273 1.00 20.64 ATOM 192 CA GLU B1315 76.245 -3.835 -20.321 1.00 22.53 ATOM 193 C GLU B1315 75.862 -2.623 -19.479 1.00 24.57 ATOM 194 O GLU B1315 74.675 -2.422 -19.189 1.00 28.62 ATOM 195 CB GLU B1315 76.677 -4.998 -19.441 1.00 20.34 ATOM 196 CG GLU B1315 76.666 -6.324 -20.165 1.00 20.55 ATOM 197 CD GLU B1315 76.638 -7.554 -19.271 1.00 19.84 ATOM 198 OE1 GLU B1315 75.904 -8.494 -19.596 1.00 21.82 ATOM 199 OE2 GLU B1315 77.273 -7.582 -18.203 1.00 17.90 ATOM 200 N HIS B1316 76.849 -1.780 -19.151 1.00 21.63 ATOM 201 CA HIS B1316 76.533 -0.575 -18.411 1.00 20.26 ATOM 202 C HIS B1316 75.494 0.259 -19.142 1.00 20.33 ATOM 203 O HIS B1316 74.578 0.806 -18.526 1.00 19.24 ATOM 204 CB HIS B1316 77.782 0.193 -18.112 1.00 18.87 ATOM 205 CG HIS B1316 77.527 1.616 -17.796 1.00 17.72 ATOM 206 ND1 HIS B1316 77.324 2.082 -16.514 1.00 17.63 ATOM 207 CD2 HIS B1316 77.480 2.691 -18.600 1.00 16.34 ATOM 208 CE1 HIS B1316 77.113 3.383 -16.550 1.00 15.73 ATOM 209 NE2 HIS B1316 77.210 3.774 -17.800 1.00 15.14 ATOM 210 N ILE B1317 75.577 0.294 -20.450 1.00 19.56 ATOM 211 CA ILE B1317 74.645 1.106 -21.251 1.00 19.30 ATOM 212 C ILE B1317 73.191 0.716 -20.954 1.00 21.37 ATOM 213 O ILE B1317 72.318 1.561 -20.776 1.00 23.48 ATOM 214 CB ILE B1317 74.993 0.998 -22.750 1.00 17.55 ATOM 215 CG1 ILE B1317 76.315 1.714 -23.013 1.00 17.19 ATOM 216 CG2 ILE B1317 73.942 1.620 -23.605 1.00 16.98 ATOM 217 CD1 ILE B1317 76.986 1.470 -24.335 1.00 16.49 ATOM 218 N ARG B1318 72.929 -0.576 -20.842 1.00 22.41 ATOM 219 CA ARG B1318 71.549 -1.003 -20.592 1.00 23.54 ATOM 220 C ARG B1318 71.030 -0.614 -19.217 1.00 24.18 ATOM 221 O ARG B1318 69.854 -0.837 -18.946 1.00 26.14 ATOM 222 CB ARG B1318 71.361 -2.493 -20.788 1.00 25.99 ATOM 223 CG ARG B1318 72.292 -3.133 -21.767 1.00 25.79 ATOM 224 CD ARG B1318 71.870 -4.537 -22.023 1.00 26.46 ATOM 225 NE ARG B1318 72.820 -5.203 -22.907 1.00 26.08 ATOM 226 CZ ARG B1318 73.663 -6.158 -22.526 1.00 22.52 ATOM 227 NH1 ARG B1318 73.656 -6.584 -21.253 1.00 21.95 ATOM 228 NH2 ARG B1318 74.506 -6.677 -23.405 1.00 19.86 ATOM 229 N VAL B1319 71.881 -0.083 -18.340 1.00 22.78 ATOM 230 CA VAL B1319 71.342 0.465 -17.103 1.00 22.12 ATOM 231 C VAL B1319 70.665 1.794 -17.423 1.00 24.16 ATOM 232 O VAL B1319 69.643 2.118 -16.788 1.00 25.58 ATOM 233 CB VAL B1319 72.343 0.576 -15.940 1.00 20.97 ATOM 234 CG1 VAL B1319 73.266 -0.619 -15.836 1.00 22.53 ATOM 235 CG2 VAL B1319 73.147 1.853 -15.927 1.00 22.82 ATOM 236 N HIS B1320 71.198 2.538 -18.394 1.00 23.62 ATOM 237 CA HIS B1320 70.538 3.751 -18.863 1.00 28.13 ATOM 238 C HIS B1320 69.313 3.411 -19.708 1.00 31.71 ATOM 239 O HIS B1320 68.262 4.056 -19.566 1.00 39.21 ATOM 240 CB HIS B1320 71.480 4.610 -19.714 1.00 25.23 ATOM 241 CG HIS B1320 72.733 5.000 -19.009 1.00 24.33 ATOM 242 ND1 HIS B1320 72.805 6.027 -18.096 1.00 24.58 ATOM 243 CD2 HIS B1320 73.989 4.544 -19.157 1.00 23.21 ATOM 244 CE1 HIS B1320 74.052 6.150 -17.674 1.00 23.18 ATOM 245 NE2 HIS B1320 74.790 5.255 -18.298 1.00 22.47 ATOM 246 N THR B1321 69.436 2.421 -20.598 1.00 33.08 ATOM 247 CA THR B1321 68.284 2.141 -21.450 1.00 31.70 ATOM 248 C THR B1321 67.228 1.255 -20.806 1.00 29.47 ATOM 249 O THR B1321 66.163 1.076 -21.362 1.00 29.18 ATOM 250 CB THR B1321 68.673 1.560 -22.802 1.00 31.97 ATOM 251 OG1 THR B1321 68.914 0.189 -22.647 1.00 37.22 ATOM 252 CG2 THR B1321 69.882 2.257 -23.349 1.00 31.06 ATOM 253 N GLY B1322 67.540 0.644 -19.677 1.00 30.39 ATOM 254 CA GLY B1322 66.598 -0.280 -19.022 1.00 34.80 ATOM 255 C GLY B1322 66.234 -1.509 -19.876 1.00 41.09 ATOM 256 O GLY B1322 65.357 -2.316 -19.497 1.00 42.89 ATOM 257 ZN ZN B1402 76.529 5.849 -18.192 1.00 31.75 TER