HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN B 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 B 31 ALA ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN SEQRES 2 B 31 THR PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG SEQRES 3 B 31 LYS THR GLY HIS SER ATOM 1 N ALA B1323 66.925 -1.673 -21.018 1.00 38.56 ATOM 2 CA ALA B1323 66.701 -2.814 -21.856 1.00 38.77 ATOM 3 C ALA B1323 66.951 -4.124 -21.120 1.00 39.43 ATOM 4 O ALA B1323 67.804 -4.187 -20.229 1.00 44.42 ATOM 5 CB ALA B1323 67.555 -2.746 -23.115 1.00 36.38 ATOM 6 N ARG B1324 66.196 -5.163 -21.491 1.00 39.11 ATOM 7 CA ARG B1324 66.392 -6.513 -20.951 1.00 35.11 ATOM 8 C ARG B1324 66.491 -7.496 -22.103 1.00 39.34 ATOM 9 O ARG B1324 65.595 -8.337 -22.298 1.00 40.77 ATOM 10 CB ARG B1324 65.228 -6.873 -20.040 1.00 32.90 ATOM 11 CG ARG B1324 65.243 -6.139 -18.700 1.00 30.31 ATOM 12 CD ARG B1324 64.372 -6.769 -17.644 1.00 27.04 ATOM 13 NE ARG B1324 65.134 -7.382 -16.580 1.00 30.02 ATOM 14 CZ ARG B1324 64.812 -7.347 -15.302 1.00 32.20 ATOM 15 NH1 ARG B1324 65.606 -7.937 -14.375 1.00 25.30 ATOM 16 NH2 ARG B1324 63.703 -6.703 -14.916 1.00 33.65 ATOM 17 N PRO B1325 67.598 -7.442 -22.865 1.00 40.45 ATOM 18 CA PRO B1325 67.679 -8.221 -24.093 1.00 41.60 ATOM 19 C PRO B1325 67.647 -9.748 -23.954 1.00 44.74 ATOM 20 O PRO B1325 67.073 -10.404 -24.807 1.00 46.23 ATOM 21 CB PRO B1325 68.990 -7.754 -24.719 1.00 42.61 ATOM 22 CG PRO B1325 69.807 -7.257 -23.594 1.00 44.37 ATOM 23 CD PRO B1325 68.836 -6.676 -22.613 1.00 43.04 ATOM 24 N TYR B1326 68.161 -10.299 -22.864 1.00 47.20 ATOM 25 CA TYR B1326 68.177 -11.740 -22.690 1.00 52.38 ATOM 26 C TYR B1326 66.815 -12.275 -22.311 1.00 56.92 ATOM 27 O TYR B1326 66.336 -12.006 -21.237 1.00 56.79 ATOM 28 CB TYR B1326 69.248 -12.147 -21.675 1.00 51.53 ATOM 29 CG TYR B1326 70.575 -11.526 -21.991 1.00 51.71 ATOM 30 CD1 TYR B1326 70.914 -10.225 -21.509 1.00 50.76 ATOM 31 CD2 TYR B1326 71.487 -12.192 -22.818 1.00 47.99 ATOM 32 CE1 TYR B1326 72.103 -9.637 -21.832 1.00 48.65 ATOM 33 CE2 TYR B1326 72.689 -11.594 -23.163 1.00 44.10 ATOM 34 CZ TYR B1326 72.991 -10.319 -22.650 1.00 48.91 ATOM 35 OH TYR B1326 74.180 -9.748 -23.005 1.00 48.33 ATOM 36 N VAL B1327 66.224 -13.025 -23.232 1.00 59.06 ATOM 37 CA VAL B1327 64.824 -13.483 -23.160 1.00 57.38 ATOM 38 C VAL B1327 64.813 -15.001 -23.205 1.00 60.40 ATOM 39 O VAL B1327 65.377 -15.591 -24.120 1.00 71.93 ATOM 40 CB VAL B1327 63.966 -12.883 -24.315 1.00 52.53 ATOM 41 CG1 VAL B1327 63.714 -11.400 -24.052 1.00 51.94 ATOM 42 CG2 VAL B1327 64.664 -12.996 -25.663 1.00 50.28 ATOM 43 N CYS B1328 64.211 -15.638 -22.227 1.00 67.43 ATOM 44 CA CYS B1328 64.317 -17.082 -22.066 1.00 72.13 ATOM 45 C CYS B1328 63.603 -17.829 -23.178 1.00 80.47 ATOM 46 O CYS B1328 62.445 -17.512 -23.516 1.00 90.25 ATOM 47 CB CYS B1328 63.765 -17.507 -20.705 1.00 68.68 ATOM 48 SG CYS B1328 64.146 -19.214 -20.319 1.00 74.22 ATOM 49 N ALA B1329 64.306 -18.787 -23.776 1.00 86.09 ATOM 50 CA ALA B1329 63.774 -19.567 -24.909 1.00 79.94 ATOM 51 C ALA B1329 62.965 -20.778 -24.465 1.00 76.51 ATOM 52 O ALA B1329 62.338 -21.442 -25.302 1.00 72.07 ATOM 53 CB ALA B1329 64.890 -19.972 -25.874 1.00 75.57 ATOM 54 N GLU B1330 62.998 -21.093 -23.166 1.00 70.53 ATOM 55 CA GLU B1330 62.330 -22.268 -22.618 1.00 75.49 ATOM 56 C GLU B1330 60.822 -22.059 -22.527 1.00 73.06 ATOM 57 O GLU B1330 60.379 -21.032 -22.017 1.00 70.90 ATOM 58 CB GLU B1330 62.915 -22.563 -21.233 1.00 81.34 ATOM 59 CG GLU B1330 62.346 -23.778 -20.529 1.00 90.18 ATOM 60 CD GLU B1330 62.838 -25.094 -21.129 1.00 95.36 ATOM 61 OE1 GLU B1330 63.558 -25.067 -22.163 1.00 98.23 ATOM 62 OE2 GLU B1330 62.517 -26.158 -20.545 1.00 96.30 ATOM 63 N PRO B1331 60.026 -23.025 -23.029 1.00 77.99 ATOM 64 CA PRO B1331 58.555 -22.908 -22.924 1.00 76.48 ATOM 65 C PRO B1331 58.083 -22.857 -21.461 1.00 77.97 ATOM 66 O PRO B1331 58.655 -23.545 -20.604 1.00 75.45 ATOM 67 CB PRO B1331 58.030 -24.180 -23.597 1.00 69.79 ATOM 68 CG PRO B1331 59.196 -25.003 -23.971 1.00 70.10 ATOM 69 CD PRO B1331 60.407 -24.404 -23.354 1.00 78.01 ATOM 70 N ASP B1332 57.086 -22.015 -21.202 1.00 78.53 ATOM 71 CA ASP B1332 56.579 -21.771 -19.847 1.00 73.95 ATOM 72 C ASP B1332 57.647 -21.223 -18.907 1.00 71.43 ATOM 73 O ASP B1332 57.613 -21.490 -17.698 1.00 71.96 ATOM 74 CB ASP B1332 55.896 -23.028 -19.224 1.00 72.94 ATOM 75 CG ASP B1332 54.685 -23.521 -20.009 1.00 72.80 ATOM 76 OD1 ASP B1332 53.631 -22.860 -19.982 1.00 70.89 ATOM 77 OD2 ASP B1332 54.805 -24.592 -20.667 1.00 74.40 ATOM 78 N CYS B1333 58.613 -20.490 -19.448 1.00 74.56 ATOM 79 CA CYS B1333 59.478 -19.669 -18.612 1.00 77.05 ATOM 80 C CYS B1333 59.245 -18.191 -18.896 1.00 70.62 ATOM 81 O CYS B1333 58.442 -17.545 -18.241 1.00 70.65 ATOM 82 CB CYS B1333 60.953 -20.055 -18.735 1.00 78.39 ATOM 83 SG CYS B1333 61.989 -19.123 -17.609 1.00 75.25 ATOM 84 N GLY B1334 59.954 -17.652 -19.879 1.00 71.14 ATOM 85 CA GLY B1334 59.828 -16.262 -20.274 1.00 67.88 ATOM 86 C GLY B1334 60.156 -15.233 -19.207 1.00 68.57 ATOM 87 O GLY B1334 59.463 -14.223 -19.125 1.00 77.00 ATOM 88 N GLN B1335 61.214 -15.447 -18.428 1.00 62.07 ATOM 89 CA GLN B1335 61.826 -14.320 -17.717 1.00 56.05 ATOM 90 C GLN B1335 62.790 -13.600 -18.652 1.00 54.12 ATOM 91 O GLN B1335 63.156 -14.124 -19.702 1.00 52.86 ATOM 92 CB GLN B1335 62.588 -14.751 -16.474 1.00 51.93 ATOM 93 CG GLN B1335 61.771 -15.393 -15.395 1.00 52.61 ATOM 94 CD GLN B1335 62.532 -16.517 -14.743 1.00 55.98 ATOM 95 OE1 GLN B1335 63.152 -16.322 -13.714 1.00 60.67 ATOM 96 NE2 GLN B1335 62.487 -17.705 -15.336 1.00 58.67 ATOM 97 N THR B1336 63.154 -12.380 -18.281 1.00 45.95 ATOM 98 CA THR B1336 64.108 -11.592 -19.033 1.00 38.40 ATOM 99 C THR B1336 65.214 -11.075 -18.131 1.00 38.03 ATOM 100 O THR B1336 65.017 -10.988 -16.907 1.00 38.74 ATOM 101 CB THR B1336 63.478 -10.422 -19.792 1.00 38.19 ATOM 102 OG1 THR B1336 62.988 -9.506 -18.853 1.00 43.26 ATOM 103 CG2 THR B1336 62.336 -10.898 -20.642 1.00 38.16 ATOM 104 N PHE B1337 66.379 -10.778 -18.708 1.00 34.81 ATOM 105 CA PHE B1337 67.519 -10.331 -17.931 1.00 33.95 ATOM 106 C PHE B1337 68.300 -9.207 -18.593 1.00 35.74 ATOM 107 O PHE B1337 68.425 -9.144 -19.818 1.00 37.40 ATOM 108 CB PHE B1337 68.448 -11.492 -17.664 1.00 31.38 ATOM 109 CG PHE B1337 67.785 -12.674 -17.074 1.00 29.40 ATOM 110 CD1 PHE B1337 67.662 -12.823 -15.706 1.00 27.71 ATOM 111 CD2 PHE B1337 67.416 -13.712 -17.910 1.00 30.32 ATOM 112 CE1 PHE B1337 67.075 -13.943 -15.175 1.00 28.41 ATOM 113 CE2 PHE B1337 66.889 -14.897 -17.384 1.00 28.76 ATOM 114 CZ PHE B1337 66.706 -15.002 -16.012 1.00 29.83 ATOM 115 N ARG B1338 68.788 -8.308 -17.749 1.00 34.45 ATOM 116 CA ARG B1338 69.545 -7.168 -18.200 1.00 32.89 ATOM 117 C ARG B1338 70.969 -7.563 -18.531 1.00 30.99 ATOM 118 O ARG B1338 71.500 -7.137 -19.560 1.00 30.32 ATOM 119 CB ARG B1338 69.505 -6.087 -17.117 1.00 33.89 ATOM 120 CG ARG B1338 70.107 -4.747 -17.558 1.00 37.44 ATOM 121 CD ARG B1338 69.452 -3.584 -16.815 1.00 35.45 ATOM 122 NE ARG B1338 67.998 -3.531 -17.055 1.00 33.82 ATOM 123 CZ ARG B1338 67.121 -3.092 -16.162 1.00 29.34 ATOM 124 NH1 ARG B1338 65.828 -3.135 -16.452 1.00 30.66 ATOM 125 NH2 ARG B1338 67.529 -2.616 -14.995 1.00 24.05 ATOM 126 N PHE B1339 71.581 -8.371 -17.672 1.00 31.21 ATOM 127 CA PHE B1339 72.987 -8.756 -17.834 1.00 31.17 ATOM 128 C PHE B1339 73.143 -10.245 -18.093 1.00 32.21 ATOM 129 O PHE B1339 72.300 -11.053 -17.662 1.00 32.16 ATOM 130 CB PHE B1339 73.778 -8.382 -16.581 1.00 32.26 ATOM 131 CG PHE B1339 73.430 -7.033 -16.031 1.00 31.59 ATOM 132 CD1 PHE B1339 74.039 -5.861 -16.511 1.00 32.16 ATOM 133 CD2 PHE B1339 72.462 -6.942 -15.066 1.00 31.99 ATOM 134 CE1 PHE B1339 73.698 -4.631 -15.993 1.00 33.32 ATOM 135 CE2 PHE B1339 72.121 -5.714 -14.511 1.00 34.05 ATOM 136 CZ PHE B1339 72.707 -4.537 -15.019 1.00 35.19 ATOM 137 N VAL B1340 74.242 -10.595 -18.780 1.00 28.86 ATOM 138 CA VAL B1340 74.495 -11.970 -19.179 1.00 26.60 ATOM 139 C VAL B1340 74.654 -12.881 -17.951 1.00 28.12 ATOM 140 O VAL B1340 74.186 -13.997 -17.922 1.00 32.60 ATOM 141 CB VAL B1340 75.812 -12.116 -20.005 1.00 24.87 ATOM 142 CG1 VAL B1340 75.747 -11.485 -21.335 1.00 22.64 ATOM 143 CG2 VAL B1340 77.082 -11.717 -19.228 1.00 24.33 ATOM 144 N SER B1341 75.354 -12.373 -16.950 1.00 27.64 ATOM 145 CA SER B1341 75.662 -13.106 -15.758 1.00 30.81 ATOM 146 C SER B1341 74.368 -13.699 -15.183 1.00 32.32 ATOM 147 O SER B1341 74.303 -14.886 -14.861 1.00 39.70 ATOM 148 CB SER B1341 76.348 -12.209 -14.722 1.00 29.80 ATOM 149 OG SER B1341 77.218 -12.998 -13.921 1.00 33.67 ATOM 150 N ASP B1342 73.338 -12.880 -15.066 1.00 32.01 ATOM 151 CA ASP B1342 72.051 -13.338 -14.561 1.00 33.91 ATOM 152 C ASP B1342 71.464 -14.447 -15.408 1.00 37.80 ATOM 153 O ASP B1342 70.982 -15.444 -14.881 1.00 33.52 ATOM 154 CB ASP B1342 71.122 -12.140 -14.391 1.00 31.17 ATOM 155 CG ASP B1342 71.698 -11.117 -13.409 1.00 30.07 ATOM 156 OD1 ASP B1342 72.508 -11.561 -12.545 1.00 26.31 ATOM 157 OD2 ASP B1342 71.370 -9.897 -13.521 1.00 31.83 ATOM 158 N PHE B1343 71.559 -14.320 -16.722 1.00 41.41 ATOM 159 CA PHE B1343 71.076 -15.413 -17.616 1.00 50.69 ATOM 160 C PHE B1343 71.884 -16.720 -17.475 1.00 58.59 ATOM 161 O PHE B1343 71.336 -17.784 -17.548 1.00 61.19 ATOM 162 CB PHE B1343 71.038 -14.960 -19.061 1.00 45.48 ATOM 163 CG PHE B1343 70.354 -15.910 -20.015 1.00 54.04 ATOM 164 CD1 PHE B1343 69.381 -16.852 -19.628 1.00 57.94 ATOM 165 CD2 PHE B1343 70.602 -15.771 -21.401 1.00 57.03 ATOM 166 CE1 PHE B1343 68.790 -17.708 -20.554 1.00 54.93 ATOM 167 CE2 PHE B1343 69.983 -16.624 -22.340 1.00 50.44 ATOM 168 CZ PHE B1343 69.078 -17.587 -21.908 1.00 53.37 ATOM 169 N SER B1344 73.162 -16.614 -17.179 1.00 61.10 ATOM 170 CA SER B1344 74.007 -17.784 -17.020 1.00 65.67 ATOM 171 C SER B1344 73.747 -18.498 -15.686 1.00 67.01 ATOM 172 O SER B1344 73.668 -19.721 -15.640 1.00 61.59 ATOM 173 CB SER B1344 75.478 -17.384 -17.121 1.00 65.71 ATOM 174 OG SER B1344 75.778 -16.862 -18.384 1.00 68.89 ATOM 175 N ARG B1345 73.654 -17.720 -14.608 1.00 68.86 ATOM 176 CA ARG B1345 73.218 -18.253 -13.335 1.00 63.88 ATOM 177 C ARG B1345 71.847 -18.937 -13.521 1.00 64.16 ATOM 178 O ARG B1345 71.588 -19.964 -12.923 1.00 68.41 ATOM 179 CB ARG B1345 73.310 -17.241 -12.203 1.00 63.31 ATOM 180 CG ARG B1345 71.977 -16.735 -11.716 1.00 64.48 ATOM 181 CD ARG B1345 72.042 -15.455 -10.874 1.00 60.30 ATOM 182 NE ARG B1345 73.075 -15.384 -9.838 1.00 58.17 ATOM 183 CZ ARG B1345 72.905 -15.698 -8.552 1.00 62.32 ATOM 184 NH1 ARG B1345 71.713 -16.053 -8.052 1.00 52.14 ATOM 185 NH2 ARG B1345 73.939 -15.592 -7.703 1.00 58.39 ATOM 186 N HIS B1346 70.981 -18.342 -14.341 1.00 63.41 ATOM 187 CA HIS B1346 69.691 -18.945 -14.634 1.00 60.14 ATOM 188 C HIS B1346 69.823 -20.323 -15.287 1.00 58.23 ATOM 189 O HIS B1346 69.260 -21.302 -14.815 1.00 57.70 ATOM 190 CB HIS B1346 68.844 -18.037 -15.519 1.00 60.59 ATOM 191 CG HIS B1346 67.539 -18.637 -15.909 1.00 66.52 ATOM 192 ND1 HIS B1346 66.382 -18.376 -15.207 1.00 71.85 ATOM 193 CD2 HIS B1346 67.202 -19.536 -16.865 1.00 68.50 ATOM 194 CE1 HIS B1346 65.378 -19.040 -15.748 1.00 71.05 ATOM 195 NE2 HIS B1346 65.848 -19.751 -16.753 1.00 70.47 ATOM 196 N LYS B1347 70.576 -20.415 -16.388 1.00 56.31 ATOM 197 CA LYS B1347 70.811 -21.711 -17.051 1.00 52.05 ATOM 198 C LYS B1347 71.354 -22.775 -16.067 1.00 57.61 ATOM 199 O LYS B1347 70.909 -23.916 -16.072 1.00 60.99 ATOM 200 CB LYS B1347 71.814 -21.561 -18.196 1.00 49.48 ATOM 201 CG LYS B1347 71.368 -20.685 -19.361 1.00 51.72 ATOM 202 CD LYS B1347 72.473 -20.624 -20.401 1.00 52.93 ATOM 203 CE LYS B1347 72.242 -19.491 -21.400 1.00 52.77 ATOM 204 NZ LYS B1347 73.411 -19.128 -22.268 1.00 49.92 ATOM 205 N ARG B1348 72.314 -22.367 -15.244 1.00 60.64 ATOM 206 CA ARG B1348 72.888 -23.287 -14.290 1.00 59.16 ATOM 207 C ARG B1348 71.874 -23.787 -13.271 1.00 65.17 ATOM 208 O ARG B1348 71.600 -25.007 -13.213 1.00 60.60 ATOM 209 CB ARG B1348 74.137 -22.676 -13.614 1.00 58.49 ATOM 210 CG ARG B1348 75.267 -23.615 -13.229 1.00 56.47 ATOM 211 CD ARG B1348 76.302 -23.799 -14.324 1.00 59.49 ATOM 212 NE ARG B1348 76.467 -25.228 -14.562 1.00 63.39 ATOM 213 CZ ARG B1348 77.187 -25.757 -15.537 1.00 60.18 ATOM 214 NH1 ARG B1348 77.247 -27.075 -15.649 1.00 62.19 ATOM 215 NH2 ARG B1348 77.856 -24.990 -16.392 1.00 52.38 ATOM 216 N LYS B1349 71.361 -22.918 -12.385 1.00 69.60 ATOM 217 CA LYS B1349 70.349 -23.334 -11.406 1.00 67.48 ATOM 218 C LYS B1349 69.028 -23.827 -12.066 1.00 68.40 ATOM 219 O LYS B1349 68.110 -24.180 -11.335 1.00 69.69 ATOM 220 CB LYS B1349 70.020 -22.214 -10.402 1.00 65.49 ATOM 221 CG LYS B1349 70.829 -22.108 -9.097 1.00 66.42 ATOM 222 CD LYS B1349 71.330 -20.674 -8.923 1.00 67.55 ATOM 223 CE LYS B1349 71.795 -20.373 -7.489 1.00 69.68 ATOM 224 NZ LYS B1349 72.512 -19.068 -7.407 1.00 64.53 ATOM 225 N THR B1350 68.932 -23.836 -13.405 1.00 71.99 ATOM 226 CA THR B1350 67.634 -24.066 -14.042 1.00 68.48 ATOM 227 C THR B1350 67.595 -25.114 -15.164 1.00 69.12 ATOM 228 O THR B1350 66.622 -25.874 -15.243 1.00 67.42 ATOM 229 CB THR B1350 67.027 -22.713 -14.507 1.00 67.58 ATOM 230 OG1 THR B1350 66.553 -21.976 -13.363 1.00 60.26 ATOM 231 CG2 THR B1350 65.990 -22.855 -15.489 1.00 66.45 ATOM 232 N GLY B1351 68.623 -25.126 -16.005 1.00 76.20 ATOM 233 CA GLY B1351 68.678 -26.104 -17.114 1.00 73.32 ATOM 234 C GLY B1351 67.965 -25.690 -18.384 1.00 79.49 ATOM 235 O GLY B1351 67.799 -26.517 -19.275 1.00 86.37 ATOM 236 N HIS B1352 67.535 -24.430 -18.479 1.00 75.05 ATOM 237 CA HIS B1352 66.853 -23.928 -19.672 1.00 82.44 ATOM 238 C HIS B1352 67.774 -23.603 -20.823 1.00 87.35 ATOM 239 O HIS B1352 68.859 -23.155 -20.598 1.00 92.93 ATOM 240 CB HIS B1352 66.012 -22.694 -19.294 1.00 85.80 ATOM 241 CG HIS B1352 64.899 -22.995 -18.345 1.00 83.37 ATOM 242 ND1 HIS B1352 64.021 -22.031 -17.913 1.00 76.32 ATOM 243 CD2 HIS B1352 64.454 -24.167 -17.829 1.00 87.56 ATOM 244 CE1 HIS B1352 63.099 -22.586 -17.144 1.00 78.24 ATOM 245 NE2 HIS B1352 63.338 -23.881 -17.081 1.00 83.37 ATOM 246 N SER B1353 67.289 -23.777 -22.046 1.00 90.42 ATOM 247 CA SER B1353 67.980 -23.356 -23.298 1.00 93.83 ATOM 248 C SER B1353 69.315 -24.073 -23.502 1.00 87.84 ATOM 249 O SER B1353 69.523 -25.183 -23.031 1.00 88.49 ATOM 250 CB SER B1353 68.217 -21.833 -23.344 1.00 96.47 ATOM 251 OG SER B1353 67.111 -21.083 -22.865 1.00 97.15 ATOM 252 ZN ZN B1403 64.320 -20.239 -18.429 1.00 81.41 TER