HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN G 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 G 27 ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN PHE PHE SEQRES 2 G 27 SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL HIS SER SEQRES 3 G 27 ASP ATOM 1 N ASN G1266 36.257 16.787 -31.567 1.00140.54 ATOM 2 CA ASN G1266 37.709 17.111 -31.674 1.00131.55 ATOM 3 C ASN G1266 38.351 17.469 -33.018 1.00124.56 ATOM 4 O ASN G1266 38.415 16.649 -33.921 1.00127.65 ATOM 5 CB ASN G1266 37.943 15.638 -31.403 1.00122.95 ATOM 6 CG ASN G1266 37.282 15.145 -30.152 1.00123.13 ATOM 7 OD1 ASN G1266 37.795 15.349 -29.067 1.00125.94 ATOM 8 ND2 ASN G1266 36.145 14.463 -30.299 1.00116.68 ATOM 9 N ILE G1267 38.685 18.734 -33.208 1.00116.74 ATOM 10 CA ILE G1267 39.171 19.251 -34.497 1.00112.96 ATOM 11 C ILE G1267 40.226 20.318 -34.265 1.00107.92 ATOM 12 O ILE G1267 40.011 21.212 -33.433 1.00103.67 ATOM 13 CB ILE G1267 38.031 19.785 -35.415 1.00115.15 ATOM 14 CG1 ILE G1267 37.161 18.641 -35.944 1.00109.92 ATOM 15 CG2 ILE G1267 38.581 20.480 -36.628 1.00112.82 ATOM 16 CD1 ILE G1267 35.835 18.416 -35.240 1.00108.06 ATOM 17 N CYS G1268 41.337 20.237 -34.998 1.00108.09 ATOM 18 CA CYS G1268 42.414 21.206 -34.950 1.00114.25 ATOM 19 C CYS G1268 41.935 22.569 -35.464 1.00115.08 ATOM 20 O CYS G1268 41.387 22.657 -36.563 1.00121.11 ATOM 21 CB CYS G1268 43.615 20.717 -35.795 1.00110.75 ATOM 22 SG CYS G1268 44.904 19.758 -34.960 1.00108.93 ATOM 23 N PRO G1269 42.186 23.654 -34.705 1.00112.94 ATOM 24 CA PRO G1269 41.757 24.981 -35.116 1.00111.86 ATOM 25 C PRO G1269 42.490 25.588 -36.340 1.00115.15 ATOM 26 O PRO G1269 42.105 26.627 -36.824 1.00123.74 ATOM 27 CB PRO G1269 42.041 25.820 -33.863 1.00107.70 ATOM 28 CG PRO G1269 43.170 25.135 -33.181 1.00107.93 ATOM 29 CD PRO G1269 42.893 23.693 -33.408 1.00111.12 ATOM 30 N ILE G1270 43.493 24.903 -36.867 1.00113.03 ATOM 31 CA ILE G1270 44.448 25.426 -37.815 1.00108.46 ATOM 32 C ILE G1270 44.050 25.305 -39.279 1.00106.21 ATOM 33 O ILE G1270 43.719 24.255 -39.771 1.00107.06 ATOM 34 CB ILE G1270 45.860 24.796 -37.545 1.00107.48 ATOM 35 CG1 ILE G1270 46.327 25.272 -36.164 1.00104.66 ATOM 36 CG2 ILE G1270 46.893 25.111 -38.619 1.00107.77 ATOM 37 CD1 ILE G1270 46.159 24.202 -35.130 1.00 95.14 ATOM 38 N LYS G1271 44.421 26.377 -39.936 1.00100.59 ATOM 39 CA LYS G1271 44.294 26.487 -41.323 1.00 96.14 ATOM 40 C LYS G1271 45.217 25.400 -41.804 1.00102.05 ATOM 41 O LYS G1271 46.333 25.225 -41.318 1.00105.94 ATOM 42 CB LYS G1271 44.845 27.831 -41.747 1.00 90.96 ATOM 43 CG LYS G1271 44.942 28.859 -40.638 1.00 84.13 ATOM 44 CD LYS G1271 44.492 30.236 -41.117 1.00 83.52 ATOM 45 CE LYS G1271 43.000 30.464 -40.926 1.00 75.06 ATOM 46 NZ LYS G1271 42.730 31.605 -40.018 1.00 68.92 ATOM 47 N GLY G1272 44.723 24.699 -42.801 1.00105.61 ATOM 48 CA GLY G1272 45.344 23.588 -43.491 1.00106.31 ATOM 49 C GLY G1272 45.722 22.369 -42.687 1.00109.98 ATOM 50 O GLY G1272 46.553 21.582 -43.141 1.00112.77 ATOM 51 N CYS G1273 45.155 22.215 -41.492 1.00110.88 ATOM 52 CA CYS G1273 45.327 20.980 -40.702 1.00111.60 ATOM 53 C CYS G1273 43.962 20.367 -40.394 1.00119.65 ATOM 54 O CYS G1273 43.563 19.392 -41.027 1.00122.17 ATOM 55 CB CYS G1273 46.219 21.200 -39.456 1.00108.61 ATOM 56 SG CYS G1273 46.297 19.830 -38.311 1.00 93.39 ATOM 57 N GLY G1274 43.238 20.958 -39.437 1.00120.74 ATOM 58 CA GLY G1274 41.866 20.617 -39.125 1.00119.02 ATOM 59 C GLY G1274 41.540 19.135 -39.050 1.00126.86 ATOM 60 O GLY G1274 40.455 18.707 -39.441 1.00128.78 ATOM 61 N LYS G1275 42.498 18.340 -38.572 1.00133.63 ATOM 62 CA LYS G1275 42.255 16.910 -38.359 1.00135.96 ATOM 63 C LYS G1275 41.300 16.655 -37.207 1.00139.81 ATOM 64 O LYS G1275 41.092 17.497 -36.365 1.00136.30 ATOM 65 CB LYS G1275 43.563 16.138 -38.203 1.00133.59 ATOM 66 CG LYS G1275 44.385 16.059 -39.497 1.00134.96 ATOM 67 CD LYS G1275 45.236 14.776 -39.609 1.00132.48 ATOM 68 CE LYS G1275 45.303 14.286 -41.053 1.00129.01 ATOM 69 NZ LYS G1275 45.813 12.884 -41.178 1.00126.92 ATOM 70 N ASN G1276 40.760 15.442 -37.172 1.00142.31 ATOM 71 CA ASN G1276 39.823 14.956 -36.162 1.00139.13 ATOM 72 C ASN G1276 40.502 13.898 -35.275 1.00144.90 ATOM 73 O ASN G1276 41.250 13.055 -35.769 1.00153.15 ATOM 74 CB ASN G1276 38.609 14.356 -36.881 1.00123.65 ATOM 75 CG ASN G1276 37.803 13.409 -35.983 1.00116.97 ATOM 76 OD1 ASN G1276 37.067 13.858 -35.087 1.00111.66 ATOM 77 ND2 ASN G1276 37.975 12.108 -36.181 1.00112.65 ATOM 78 N PHE G1277 40.203 13.931 -33.971 1.00143.27 ATOM 79 CA PHE G1277 40.861 13.105 -32.983 1.00135.99 ATOM 80 C PHE G1277 39.918 12.274 -32.123 1.00135.42 ATOM 81 O PHE G1277 38.719 12.121 -32.437 1.00140.35 ATOM 82 CB PHE G1277 41.740 13.984 -32.097 1.00128.61 ATOM 83 CG PHE G1277 42.754 14.784 -32.850 1.00125.69 ATOM 84 CD1 PHE G1277 43.809 14.172 -33.544 1.00116.36 ATOM 85 CD2 PHE G1277 42.645 16.183 -32.876 1.00125.93 ATOM 86 CE1 PHE G1277 44.715 14.946 -34.245 1.00120.19 ATOM 87 CE2 PHE G1277 43.571 16.955 -33.560 1.00120.05 ATOM 88 CZ PHE G1277 44.621 16.331 -34.213 1.00117.61 ATOM 89 N PHE G1278 40.470 11.738 -31.043 1.00131.38 ATOM 90 CA PHE G1278 39.740 10.926 -30.056 1.00127.64 ATOM 91 C PHE G1278 39.306 11.694 -28.810 1.00126.23 ATOM 92 O PHE G1278 38.246 11.463 -28.247 1.00125.95 ATOM 93 CB PHE G1278 40.525 9.674 -29.618 1.00122.34 ATOM 94 CG PHE G1278 39.625 8.534 -29.264 1.00116.42 ATOM 95 CD1 PHE G1278 39.087 8.402 -27.972 1.00109.84 ATOM 96 CD2 PHE G1278 39.252 7.605 -30.237 1.00116.88 ATOM 97 CE1 PHE G1278 38.234 7.340 -27.658 1.00103.57 ATOM 98 CE2 PHE G1278 38.393 6.545 -29.924 1.00110.52 ATOM 99 CZ PHE G1278 37.886 6.417 -28.637 1.00105.52 ATOM 100 N SER G1279 40.144 12.611 -28.350 1.00124.87 ATOM 101 CA SER G1279 39.792 13.596 -27.311 1.00116.37 ATOM 102 C SER G1279 40.450 14.911 -27.642 1.00103.42 ATOM 103 O SER G1279 41.360 15.006 -28.458 1.00 89.54 ATOM 104 CB SER G1279 40.206 13.151 -25.892 1.00120.45 ATOM 105 OG SER G1279 41.563 13.468 -25.651 1.00129.40 ATOM 106 N HIS G1280 39.987 15.977 -27.002 1.00 98.49 ATOM 107 CA HIS G1280 40.661 17.252 -27.114 1.00101.27 ATOM 108 C HIS G1280 41.991 17.298 -26.380 1.00 99.40 ATOM 109 O HIS G1280 42.661 18.314 -26.516 1.00 96.59 ATOM 110 CB HIS G1280 39.700 18.332 -26.610 1.00 98.41 ATOM 111 CG HIS G1280 38.625 18.658 -27.590 1.00100.24 ATOM 112 ND1 HIS G1280 37.464 17.922 -27.686 1.00102.90 ATOM 113 CD2 HIS G1280 38.564 19.593 -28.564 1.00 98.56 ATOM 114 CE1 HIS G1280 36.702 18.438 -28.631 1.00104.71 ATOM 115 NE2 HIS G1280 37.348 19.448 -29.188 1.00103.71 ATOM 116 N LYS G1281 42.288 16.315 -25.531 1.00106.60 ATOM 117 CA LYS G1281 43.560 16.288 -24.865 1.00121.13 ATOM 118 C LYS G1281 44.657 15.984 -25.852 1.00122.44 ATOM 119 O LYS G1281 45.752 16.586 -25.793 1.00118.70 ATOM 120 CB LYS G1281 43.517 15.241 -23.735 1.00134.06 ATOM 121 CG LYS G1281 42.613 15.706 -22.617 1.00141.83 ATOM 122 CD LYS G1281 42.713 14.875 -21.346 1.00147.68 ATOM 123 CE LYS G1281 41.784 15.420 -20.263 1.00152.28 ATOM 124 NZ LYS G1281 41.590 14.453 -19.145 1.00156.03 ATOM 125 N TYR G1282 44.447 15.043 -26.778 1.00122.36 ATOM 126 CA TYR G1282 45.414 14.875 -27.858 1.00122.69 ATOM 127 C TYR G1282 45.534 16.102 -28.769 1.00114.90 ATOM 128 O TYR G1282 46.542 16.290 -29.419 1.00101.52 ATOM 129 CB TYR G1282 45.221 13.623 -28.660 1.00132.52 ATOM 130 CG TYR G1282 46.386 13.400 -29.587 1.00137.52 ATOM 131 CD1 TYR G1282 47.703 13.270 -29.084 1.00140.73 ATOM 132 CD2 TYR G1282 46.188 13.260 -30.964 1.00141.39 ATOM 133 CE1 TYR G1282 48.768 13.064 -29.937 1.00143.03 ATOM 134 CE2 TYR G1282 47.266 13.022 -31.816 1.00137.25 ATOM 135 CZ TYR G1282 48.538 12.928 -31.299 1.00138.22 ATOM 136 OH TYR G1282 49.566 12.704 -32.164 1.00131.44 ATOM 137 N LEU G1283 44.502 16.929 -28.781 1.00114.37 ATOM 138 CA LEU G1283 44.627 18.274 -29.326 1.00114.69 ATOM 139 C LEU G1283 45.515 19.148 -28.462 1.00107.07 ATOM 140 O LEU G1283 46.211 20.030 -28.977 1.00 94.60 ATOM 141 CB LEU G1283 43.237 18.913 -29.498 1.00119.58 ATOM 142 CG LEU G1283 43.052 20.183 -30.316 1.00125.63 ATOM 143 CD1 LEU G1283 41.560 20.267 -30.679 1.00130.06 ATOM 144 CD2 LEU G1283 43.495 21.465 -29.633 1.00123.42 ATOM 145 N VAL G1284 45.497 18.930 -27.136 1.00108.62 ATOM 146 CA VAL G1284 46.401 19.649 -26.265 1.00106.70 ATOM 147 C VAL G1284 47.877 19.363 -26.662 1.00109.82 ATOM 148 O VAL G1284 48.625 20.302 -26.861 1.00107.21 ATOM 149 CB VAL G1284 46.107 19.290 -24.774 1.00104.22 ATOM 150 CG1 VAL G1284 47.232 19.699 -23.820 1.00105.46 ATOM 151 CG2 VAL G1284 44.780 19.853 -24.341 1.00100.14 ATOM 152 N GLN G1285 48.215 18.082 -26.724 1.00121.95 ATOM 153 CA GLN G1285 49.582 17.696 -27.005 1.00130.89 ATOM 154 C GLN G1285 49.960 17.954 -28.467 1.00132.86 ATOM 155 O GLN G1285 51.091 18.370 -28.745 1.00127.77 ATOM 156 CB GLN G1285 49.826 16.251 -26.573 1.00138.10 ATOM 157 CG GLN G1285 49.825 16.148 -25.057 1.00136.21 ATOM 158 CD GLN G1285 50.322 14.835 -24.523 1.00137.34 ATOM 159 OE1 GLN G1285 51.256 14.814 -23.741 1.00133.78 ATOM 160 NE2 GLN G1285 49.690 13.736 -24.922 1.00141.29 ATOM 161 N HIS G1286 49.049 17.628 -29.369 1.00131.15 ATOM 162 CA HIS G1286 49.364 17.553 -30.799 1.00132.35 ATOM 163 C HIS G1286 49.930 18.845 -31.370 1.00132.28 ATOM 164 O HIS G1286 50.574 18.824 -32.399 1.00137.13 ATOM 165 CB HIS G1286 48.115 17.094 -31.596 1.00131.32 ATOM 166 CG HIS G1286 48.180 17.381 -33.065 1.00130.24 ATOM 167 ND1 HIS G1286 48.935 16.633 -33.942 1.00124.45 ATOM 168 CD2 HIS G1286 47.667 18.400 -33.792 1.00132.15 ATOM 169 CE1 HIS G1286 48.864 17.165 -35.150 1.00121.16 ATOM 170 NE2 HIS G1286 48.098 18.237 -35.084 1.00127.81 ATOM 171 N GLN G1287 49.710 19.976 -30.727 1.00124.50 ATOM 172 CA GLN G1287 50.104 21.219 -31.329 1.00117.61 ATOM 173 C GLN G1287 51.564 21.550 -31.125 1.00111.40 ATOM 174 O GLN G1287 52.001 22.650 -31.464 1.00105.73 ATOM 175 CB GLN G1287 49.186 22.349 -30.883 1.00123.04 ATOM 176 CG GLN G1287 49.471 23.569 -31.707 1.00124.48 ATOM 177 CD GLN G1287 48.269 24.111 -32.398 1.00130.08 ATOM 178 OE1 GLN G1287 48.058 23.914 -33.606 1.00125.33 ATOM 179 NE2 GLN G1287 47.430 24.796 -31.640 1.00140.46 ATOM 180 N ARG G1288 52.357 20.651 -30.553 1.00112.22 ATOM 181 CA ARG G1288 53.804 20.760 -30.725 1.00109.33 ATOM 182 C ARG G1288 54.135 20.876 -32.252 1.00114.10 ATOM 183 O ARG G1288 55.007 21.607 -32.663 1.00116.45 ATOM 184 CB ARG G1288 54.515 19.617 -30.034 1.00101.18 ATOM 185 CG ARG G1288 54.281 18.264 -30.660 1.00105.41 ATOM 186 CD ARG G1288 54.751 17.096 -29.866 1.00103.42 ATOM 187 NE ARG G1288 53.672 16.510 -29.077 1.00 94.39 ATOM 188 CZ ARG G1288 53.905 15.547 -28.170 1.00 90.78 ATOM 189 NH1 ARG G1288 55.143 15.078 -27.967 1.00 94.93 ATOM 190 NH2 ARG G1288 52.913 15.035 -27.471 1.00 85.14 ATOM 191 N VAL G1289 53.395 20.108 -33.057 1.00107.61 ATOM 192 CA VAL G1289 53.518 20.041 -34.487 1.00102.08 ATOM 193 C VAL G1289 53.648 21.405 -35.136 1.00106.10 ATOM 194 O VAL G1289 54.385 21.608 -36.091 1.00107.16 ATOM 195 CB VAL G1289 52.343 19.248 -35.110 1.00 98.37 ATOM 196 CG1 VAL G1289 52.364 19.337 -36.632 1.00 91.04 ATOM 197 CG2 VAL G1289 52.440 17.785 -34.721 1.00 90.70 ATOM 198 N HIS G1290 52.885 22.381 -34.653 1.00111.03 ATOM 199 CA HIS G1290 52.937 23.681 -35.359 1.00116.09 ATOM 200 C HIS G1290 53.825 24.669 -34.646 1.00108.46 ATOM 201 O HIS G1290 53.593 25.874 -34.665 1.00107.29 ATOM 202 CB HIS G1290 51.549 24.204 -35.782 1.00126.09 ATOM 203 CG HIS G1290 50.724 23.201 -36.536 1.00138.01 ATOM 204 ND1 HIS G1290 49.501 23.499 -37.104 1.00140.20 ATOM 205 CD2 HIS G1290 50.975 21.910 -36.867 1.00145.95 ATOM 206 CE1 HIS G1290 49.039 22.432 -37.739 1.00142.38 ATOM 207 NE2 HIS G1290 49.894 21.445 -37.579 1.00148.91 ATOM 208 N SER G1291 54.869 24.202 -33.963 1.00100.88 ATOM 209 CA SER G1291 55.997 25.018 -33.515 1.00 95.73 ATOM 210 C SER G1291 57.280 24.286 -33.899 1.00 99.92 ATOM 211 O SER G1291 57.302 23.057 -33.954 1.00 98.83 ATOM 212 CB SER G1291 56.028 25.231 -31.992 1.00 87.56 ATOM 213 OG SER G1291 56.938 26.257 -31.665 1.00 87.88 ATOM 214 N ASP G1292 58.309 25.060 -34.216 1.00102.35 ATOM 215 CA ASP G1292 59.571 24.504 -34.651 1.00101.64 ATOM 216 C ASP G1292 60.522 24.194 -33.494 1.00105.77 ATOM 217 O ASP G1292 61.618 23.680 -33.713 1.00110.59 ATOM 218 CB ASP G1292 60.211 25.410 -35.713 1.00 97.66 ATOM 219 CG ASP G1292 59.677 25.123 -37.126 1.00 98.50 ATOM 220 OD1 ASP G1292 58.490 24.742 -37.292 1.00 96.86 ATOM 221 OD2 ASP G1292 60.453 25.269 -38.099 1.00 95.40 ATOM 222 ZN ZN G1403 47.799 21.648 -35.952 1.00112.68 TER