HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN G 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 G 30 ASP ARG PRO LEU LYS CYS PRO TRP LYS GLY CYS LYS MET SEQRES 2 G 30 THR PHE LYS TRP ALA TRP SER ARG THR GLU HIS ILE ARG SEQRES 3 G 30 VAL HIS THR GLY ATOM 1 N ASP G1293 60.131 24.558 -32.279 1.00 98.57 ATOM 2 CA ASP G1293 60.907 24.199 -31.100 1.00 84.40 ATOM 3 C ASP G1293 61.041 22.690 -30.987 1.00 86.43 ATOM 4 O ASP G1293 60.087 21.976 -31.252 1.00 89.47 ATOM 5 CB ASP G1293 60.270 24.756 -29.837 1.00 78.50 ATOM 6 CG ASP G1293 61.308 25.174 -28.805 1.00 75.56 ATOM 7 OD1 ASP G1293 62.450 24.657 -28.859 1.00 71.42 ATOM 8 OD2 ASP G1293 60.981 26.033 -27.954 1.00 70.76 ATOM 9 N ARG G1294 62.184 22.235 -30.498 1.00 77.53 ATOM 10 CA ARG G1294 62.421 20.795 -30.298 1.00 72.80 ATOM 11 C ARG G1294 62.886 20.482 -28.854 1.00 76.67 ATOM 12 O ARG G1294 64.050 20.713 -28.549 1.00 66.20 ATOM 13 CB ARG G1294 63.424 20.305 -31.330 1.00 64.15 ATOM 14 CG ARG G1294 62.805 20.034 -32.710 1.00 55.23 ATOM 15 CD ARG G1294 63.717 19.541 -33.837 1.00 48.60 ATOM 16 NE ARG G1294 63.597 18.139 -34.281 1.00 45.31 ATOM 17 CZ ARG G1294 62.585 17.599 -34.972 1.00 43.18 ATOM 18 NH1 ARG G1294 61.522 18.317 -35.290 1.00 47.53 ATOM 19 NH2 ARG G1294 62.607 16.302 -35.276 1.00 36.71 ATOM 20 N PRO G1295 61.971 19.966 -27.995 1.00 83.96 ATOM 21 CA PRO G1295 62.306 19.804 -26.564 1.00 78.38 ATOM 22 C PRO G1295 63.274 18.629 -26.219 1.00 71.42 ATOM 23 O PRO G1295 64.299 18.823 -25.632 1.00 69.80 ATOM 24 CB PRO G1295 60.940 19.559 -25.900 1.00 82.08 ATOM 25 CG PRO G1295 59.961 19.248 -27.023 1.00 81.80 ATOM 26 CD PRO G1295 60.557 19.657 -28.328 1.00 87.57 ATOM 27 N LEU G1296 62.911 17.433 -26.668 1.00 61.56 ATOM 28 CA LEU G1296 63.438 16.209 -26.134 1.00 54.97 ATOM 29 C LEU G1296 64.767 15.867 -26.785 1.00 56.00 ATOM 30 O LEU G1296 64.831 15.076 -27.714 1.00 60.95 ATOM 31 CB LEU G1296 62.417 15.085 -26.350 1.00 48.13 ATOM 32 CG LEU G1296 60.949 15.374 -26.059 1.00 46.85 ATOM 33 CD1 LEU G1296 60.127 14.088 -26.250 1.00 47.82 ATOM 34 CD2 LEU G1296 60.771 15.886 -24.637 1.00 41.92 ATOM 35 N LYS G1297 65.860 16.389 -26.242 1.00 53.35 ATOM 36 CA LYS G1297 67.215 16.145 -26.672 1.00 53.45 ATOM 37 C LYS G1297 67.627 14.651 -26.692 1.00 54.97 ATOM 38 O LYS G1297 66.970 13.828 -26.073 1.00 52.84 ATOM 39 CB LYS G1297 68.108 16.928 -25.711 1.00 48.72 ATOM 40 CG LYS G1297 68.391 18.379 -26.115 1.00 49.97 ATOM 41 CD LYS G1297 69.478 18.920 -25.192 1.00 48.64 ATOM 42 CE LYS G1297 70.856 18.279 -25.376 1.00 47.29 ATOM 43 NZ LYS G1297 71.586 17.994 -24.084 1.00 46.56 ATOM 44 N CYS G1298 68.632 14.354 -27.504 1.00 54.87 ATOM 45 CA CYS G1298 69.201 13.035 -27.547 1.00 49.90 ATOM 46 C CYS G1298 70.114 12.852 -26.346 1.00 46.21 ATOM 47 O CYS G1298 70.864 13.772 -25.982 1.00 46.46 ATOM 48 CB CYS G1298 70.037 12.821 -28.822 1.00 55.15 ATOM 49 SG CYS G1298 70.674 11.139 -29.020 1.00 54.70 ATOM 50 N PRO G1299 70.079 11.662 -25.718 1.00 40.51 ATOM 51 CA PRO G1299 70.968 11.380 -24.610 1.00 37.62 ATOM 52 C PRO G1299 72.368 10.929 -25.005 1.00 37.80 ATOM 53 O PRO G1299 73.218 10.875 -24.129 1.00 40.80 ATOM 54 CB PRO G1299 70.245 10.289 -23.850 1.00 38.56 ATOM 55 CG PRO G1299 69.444 9.601 -24.865 1.00 38.55 ATOM 56 CD PRO G1299 69.059 10.623 -25.884 1.00 38.77 ATOM 57 N TRP G1300 72.627 10.692 -26.283 1.00 35.95 ATOM 58 CA TRP G1300 73.932 10.169 -26.692 1.00 37.59 ATOM 59 C TRP G1300 74.986 11.275 -26.791 1.00 37.64 ATOM 60 O TRP G1300 74.792 12.281 -27.442 1.00 39.52 ATOM 61 CB TRP G1300 73.804 9.464 -28.023 1.00 37.19 ATOM 62 CG TRP G1300 74.793 8.403 -28.240 1.00 34.95 ATOM 63 CD1 TRP G1300 75.964 8.502 -28.936 1.00 33.00 ATOM 64 CD2 TRP G1300 74.716 7.057 -27.772 1.00 30.40 ATOM 65 NE1 TRP G1300 76.623 7.294 -28.941 1.00 31.78 ATOM 66 CE2 TRP G1300 75.893 6.390 -28.217 1.00 29.38 ATOM 67 CE3 TRP G1300 73.766 6.342 -27.045 1.00 28.48 ATOM 68 CZ2 TRP G1300 76.139 5.033 -27.957 1.00 26.71 ATOM 69 CZ3 TRP G1300 74.012 4.982 -26.766 1.00 27.54 ATOM 70 CH2 TRP G1300 75.193 4.341 -27.233 1.00 27.78 ATOM 71 N LYS G1301 76.134 11.015 -26.185 1.00 38.49 ATOM 72 CA LYS G1301 77.264 11.934 -26.218 1.00 39.77 ATOM 73 C LYS G1301 77.621 12.341 -27.648 1.00 45.97 ATOM 74 O LYS G1301 77.597 11.535 -28.567 1.00 43.51 ATOM 75 CB LYS G1301 78.489 11.356 -25.496 1.00 35.65 ATOM 76 CG LYS G1301 78.510 11.632 -23.999 1.00 35.07 ATOM 77 CD LYS G1301 79.832 11.135 -23.364 1.00 30.91 ATOM 78 CE LYS G1301 79.928 11.374 -21.864 1.00 26.38 ATOM 79 NZ LYS G1301 80.554 10.261 -21.068 1.00 24.35 ATOM 80 N GLY G1302 77.831 13.640 -27.828 1.00 49.05 ATOM 81 CA GLY G1302 78.262 14.196 -29.094 1.00 49.47 ATOM 82 C GLY G1302 77.197 14.194 -30.184 1.00 57.44 ATOM 83 O GLY G1302 77.501 14.518 -31.349 1.00 61.86 ATOM 84 N CYS G1303 75.973 13.799 -29.833 1.00 50.33 ATOM 85 CA CYS G1303 74.867 13.815 -30.765 1.00 45.74 ATOM 86 C CYS G1303 74.126 15.122 -30.569 1.00 48.63 ATOM 87 O CYS G1303 73.809 15.491 -29.428 1.00 57.99 ATOM 88 CB CYS G1303 73.934 12.634 -30.531 1.00 41.74 ATOM 89 SG CYS G1303 72.494 12.658 -31.569 1.00 38.70 ATOM 90 N LYS G1304 73.866 15.826 -31.668 1.00 49.60 ATOM 91 CA LYS G1304 73.185 17.119 -31.604 1.00 44.91 ATOM 92 C LYS G1304 71.684 17.017 -31.878 1.00 40.89 ATOM 93 O LYS G1304 70.981 18.016 -31.765 1.00 39.21 ATOM 94 CB LYS G1304 73.827 18.122 -32.551 1.00 44.91 ATOM 95 CG LYS G1304 75.239 18.498 -32.112 1.00 50.83 ATOM 96 CD LYS G1304 75.391 18.571 -30.579 1.00 50.73 ATOM 97 CE LYS G1304 76.867 18.494 -30.205 1.00 55.87 ATOM 98 NZ LYS G1304 77.329 19.130 -28.921 1.00 57.31 ATOM 99 N MET G1305 71.222 15.815 -32.214 1.00 36.36 ATOM 100 CA MET G1305 69.849 15.642 -32.660 1.00 41.08 ATOM 101 C MET G1305 68.846 15.981 -31.576 1.00 40.24 ATOM 102 O MET G1305 69.083 15.717 -30.400 1.00 44.42 ATOM 103 CB MET G1305 69.633 14.233 -33.163 1.00 44.91 ATOM 104 CG MET G1305 68.407 14.102 -34.042 1.00 51.99 ATOM 105 SD MET G1305 68.573 14.895 -35.674 1.00 55.31 ATOM 106 CE MET G1305 70.071 14.081 -36.240 1.00 62.75 ATOM 107 N THR G1306 67.727 16.567 -31.983 1.00 42.13 ATOM 108 CA THR G1306 66.656 16.981 -31.070 1.00 45.05 ATOM 109 C THR G1306 65.341 16.509 -31.642 1.00 49.73 ATOM 110 O THR G1306 65.224 16.255 -32.851 1.00 55.71 ATOM 111 CB THR G1306 66.571 18.500 -30.971 1.00 44.62 ATOM 112 OG1 THR G1306 66.568 19.050 -32.298 1.00 52.46 ATOM 113 CG2 THR G1306 67.762 19.067 -30.199 1.00 42.82 ATOM 114 N PHE G1307 64.324 16.413 -30.798 1.00 55.01 ATOM 115 CA PHE G1307 63.009 15.917 -31.193 1.00 60.66 ATOM 116 C PHE G1307 61.875 16.640 -30.530 1.00 63.22 ATOM 117 O PHE G1307 62.083 17.547 -29.754 1.00 49.07 ATOM 118 CB PHE G1307 62.893 14.403 -30.990 1.00 59.23 ATOM 119 CG PHE G1307 64.124 13.671 -31.306 1.00 59.50 ATOM 120 CD1 PHE G1307 64.535 13.527 -32.625 1.00 61.36 ATOM 121 CD2 PHE G1307 64.871 13.095 -30.295 1.00 56.54 ATOM 122 CE1 PHE G1307 65.690 12.844 -32.932 1.00 63.70 ATOM 123 CE2 PHE G1307 66.045 12.428 -30.604 1.00 63.54 ATOM 124 CZ PHE G1307 66.455 12.295 -31.924 1.00 64.28 ATOM 125 N LYS G1308 60.640 16.195 -30.831 1.00 70.19 ATOM 126 CA LYS G1308 59.424 16.699 -30.196 1.00 72.35 ATOM 127 C LYS G1308 58.563 15.581 -29.637 1.00 66.70 ATOM 128 O LYS G1308 57.802 15.788 -28.718 1.00 69.46 ATOM 129 CB LYS G1308 58.581 17.562 -31.170 1.00 80.03 ATOM 130 CG LYS G1308 59.364 18.664 -31.892 1.00 85.24 ATOM 131 CD LYS G1308 58.384 19.681 -32.468 1.00 84.76 ATOM 132 CE LYS G1308 57.631 20.360 -31.320 1.00 85.22 ATOM 133 NZ LYS G1308 57.267 21.786 -31.567 1.00 86.29 ATOM 134 N TRP G1309 58.688 14.375 -30.176 1.00 72.32 ATOM 135 CA TRP G1309 57.924 13.221 -29.732 1.00 82.09 ATOM 136 C TRP G1309 58.804 12.209 -28.997 1.00 82.33 ATOM 137 O TRP G1309 59.881 11.876 -29.454 1.00 87.73 ATOM 138 CB TRP G1309 57.362 12.548 -30.981 1.00 96.19 ATOM 139 CG TRP G1309 56.133 13.188 -31.492 1.00102.67 ATOM 140 CD1 TRP G1309 56.003 14.113 -32.513 1.00101.64 ATOM 141 CD2 TRP G1309 54.828 12.944 -31.009 1.00102.07 ATOM 142 NE1 TRP G1309 54.703 14.474 -32.644 1.00102.77 ATOM 143 CE2 TRP G1309 53.948 13.755 -31.759 1.00103.71 ATOM 144 CE3 TRP G1309 54.302 12.092 -30.027 1.00101.90 ATOM 145 CZ2 TRP G1309 52.569 13.776 -31.530 1.00110.51 ATOM 146 CZ3 TRP G1309 52.925 12.119 -29.794 1.00102.28 ATOM 147 CH2 TRP G1309 52.080 12.945 -30.556 1.00106.63 ATOM 148 N ALA G1310 58.307 11.733 -27.878 1.00 73.43 ATOM 149 CA ALA G1310 59.024 10.753 -27.077 1.00 61.66 ATOM 150 C ALA G1310 59.360 9.478 -27.852 1.00 57.83 ATOM 151 O ALA G1310 60.486 8.987 -27.777 1.00 52.95 ATOM 152 CB ALA G1310 58.266 10.434 -25.799 1.00 59.51 ATOM 153 N TRP G1311 58.400 8.920 -28.573 1.00 59.85 ATOM 154 CA TRP G1311 58.601 7.545 -29.041 1.00 59.20 ATOM 155 C TRP G1311 59.628 7.496 -30.169 1.00 57.49 ATOM 156 O TRP G1311 60.427 6.555 -30.289 1.00 55.25 ATOM 157 CB TRP G1311 57.283 6.915 -29.472 1.00 57.71 ATOM 158 CG TRP G1311 57.493 5.576 -30.002 1.00 63.42 ATOM 159 CD1 TRP G1311 57.580 5.223 -31.315 1.00 66.97 ATOM 160 CD2 TRP G1311 57.738 4.386 -29.253 1.00 64.66 ATOM 161 NE1 TRP G1311 57.824 3.870 -31.431 1.00 66.98 ATOM 162 CE2 TRP G1311 57.933 3.335 -30.176 1.00 66.52 ATOM 163 CE3 TRP G1311 57.768 4.086 -27.889 1.00 62.24 ATOM 164 CZ2 TRP G1311 58.125 2.026 -29.770 1.00 65.01 ATOM 165 CZ3 TRP G1311 57.974 2.765 -27.502 1.00 60.85 ATOM 166 CH2 TRP G1311 58.148 1.751 -28.445 1.00 63.59 ATOM 167 N SER G1312 59.596 8.517 -31.026 1.00 57.49 ATOM 168 CA SER G1312 60.662 8.711 -31.987 1.00 60.16 ATOM 169 C SER G1312 62.021 8.636 -31.316 1.00 61.19 ATOM 170 O SER G1312 62.852 7.843 -31.734 1.00 67.55 ATOM 171 CB SER G1312 60.469 10.026 -32.727 1.00 61.08 ATOM 172 OG SER G1312 61.592 10.863 -32.539 1.00 63.43 ATOM 173 N ARG G1313 62.230 9.425 -30.272 1.00 57.22 ATOM 174 CA ARG G1313 63.493 9.418 -29.516 1.00 55.84 ATOM 175 C ARG G1313 63.798 8.001 -28.976 1.00 51.99 ATOM 176 O ARG G1313 64.834 7.392 -29.341 1.00 44.02 ATOM 177 CB ARG G1313 63.418 10.405 -28.358 1.00 47.57 ATOM 178 CG ARG G1313 64.652 10.518 -27.497 1.00 43.80 ATOM 179 CD ARG G1313 64.521 11.678 -26.534 1.00 41.90 ATOM 180 NE ARG G1313 63.489 11.482 -25.502 1.00 42.20 ATOM 181 CZ ARG G1313 63.379 12.222 -24.392 1.00 38.28 ATOM 182 NH1 ARG G1313 64.211 13.239 -24.174 1.00 38.84 ATOM 183 NH2 ARG G1313 62.445 11.942 -23.497 1.00 34.61 ATOM 184 N THR G1314 62.870 7.447 -28.209 1.00 49.92 ATOM 185 CA THR G1314 63.009 6.107 -27.695 1.00 52.99 ATOM 186 C THR G1314 63.609 5.128 -28.720 1.00 55.10 ATOM 187 O THR G1314 64.492 4.330 -28.382 1.00 61.52 ATOM 188 CB THR G1314 61.628 5.589 -27.240 1.00 51.91 ATOM 189 OG1 THR G1314 61.134 6.445 -26.219 1.00 52.68 ATOM 190 CG2 THR G1314 61.711 4.148 -26.709 1.00 48.67 ATOM 191 N GLU G1315 63.105 5.180 -29.947 1.00 52.98 ATOM 192 CA GLU G1315 63.585 4.249 -30.932 1.00 47.52 ATOM 193 C GLU G1315 64.904 4.732 -31.529 1.00 43.64 ATOM 194 O GLU G1315 65.793 3.963 -31.841 1.00 42.02 ATOM 195 CB GLU G1315 62.495 3.916 -31.966 1.00 52.26 ATOM 196 CG GLU G1315 61.478 2.936 -31.355 1.00 62.75 ATOM 197 CD GLU G1315 60.580 2.199 -32.322 1.00 71.34 ATOM 198 OE1 GLU G1315 60.262 1.009 -32.060 1.00 67.50 ATOM 199 OE2 GLU G1315 60.147 2.795 -33.337 1.00 79.44 ATOM 200 N HIS G1316 64.992 6.031 -31.748 1.00 35.28 ATOM 201 CA HIS G1316 66.187 6.663 -32.314 1.00 32.40 ATOM 202 C HIS G1316 67.426 6.192 -31.589 1.00 32.80 ATOM 203 O HIS G1316 68.461 5.959 -32.185 1.00 30.01 ATOM 204 CB HIS G1316 66.065 8.194 -32.201 1.00 27.14 ATOM 205 CG HIS G1316 67.367 8.898 -32.053 1.00 23.50 ATOM 206 ND1 HIS G1316 68.039 9.437 -33.125 1.00 21.46 ATOM 207 CD2 HIS G1316 68.165 9.072 -30.970 1.00 22.44 ATOM 208 CE1 HIS G1316 69.176 9.965 -32.692 1.00 22.54 ATOM 209 NE2 HIS G1316 69.269 9.759 -31.385 1.00 21.99 ATOM 210 N ILE G1317 67.345 6.111 -30.267 1.00 39.68 ATOM 211 CA ILE G1317 68.488 5.784 -29.447 1.00 40.57 ATOM 212 C ILE G1317 69.139 4.463 -29.927 1.00 47.60 ATOM 213 O ILE G1317 70.357 4.367 -30.064 1.00 41.71 ATOM 214 CB ILE G1317 68.043 5.738 -27.975 1.00 40.41 ATOM 215 CG1 ILE G1317 67.769 7.152 -27.463 1.00 36.05 ATOM 216 CG2 ILE G1317 69.089 5.063 -27.084 1.00 40.30 ATOM 217 CD1 ILE G1317 66.959 7.198 -26.179 1.00 34.09 ATOM 218 N ARG G1318 68.305 3.470 -30.261 1.00 46.43 ATOM 219 CA ARG G1318 68.843 2.210 -30.720 1.00 47.32 ATOM 220 C ARG G1318 69.585 2.272 -32.047 1.00 45.13 ATOM 221 O ARG G1318 70.175 1.270 -32.436 1.00 48.63 ATOM 222 CB ARG G1318 67.779 1.155 -30.852 1.00 46.29 ATOM 223 CG ARG G1318 66.619 1.277 -29.920 1.00 43.55 ATOM 224 CD ARG G1318 65.807 0.042 -30.121 1.00 42.81 ATOM 225 NE ARG G1318 64.532 0.077 -29.420 1.00 46.96 ATOM 226 CZ ARG G1318 63.358 0.234 -30.009 1.00 52.36 ATOM 227 NH1 ARG G1318 63.298 0.396 -31.309 1.00 58.94 ATOM 228 NH2 ARG G1318 62.263 0.226 -29.275 1.00 53.95 ATOM 229 N VAL G1319 69.606 3.412 -32.721 1.00 44.23 ATOM 230 CA VAL G1319 70.504 3.546 -33.859 1.00 48.09 ATOM 231 C VAL G1319 71.961 3.635 -33.360 1.00 49.12 ATOM 232 O VAL G1319 72.883 3.127 -33.977 1.00 48.10 ATOM 233 CB VAL G1319 70.184 4.732 -34.765 1.00 43.66 ATOM 234 CG1 VAL G1319 71.074 4.641 -35.985 1.00 45.13 ATOM 235 CG2 VAL G1319 68.715 4.766 -35.106 1.00 42.76 ATOM 236 N HIS G1320 72.142 4.276 -32.210 1.00 50.29 ATOM 237 CA HIS G1320 73.431 4.325 -31.551 1.00 47.21 ATOM 238 C HIS G1320 73.679 2.944 -30.866 1.00 49.38 ATOM 239 O HIS G1320 74.789 2.431 -30.860 1.00 46.03 ATOM 240 CB HIS G1320 73.477 5.387 -30.487 1.00 43.59 ATOM 241 CG HIS G1320 72.934 6.724 -30.856 1.00 39.64 ATOM 242 ND1 HIS G1320 73.680 7.664 -31.523 1.00 40.34 ATOM 243 CD2 HIS G1320 71.743 7.303 -30.578 1.00 39.02 ATOM 244 CE1 HIS G1320 72.963 8.759 -31.683 1.00 38.88 ATOM 245 NE2 HIS G1320 71.793 8.568 -31.105 1.00 36.50 ATOM 246 N THR G1321 72.682 2.391 -30.210 1.00 49.27 ATOM 247 CA THR G1321 72.864 1.190 -29.456 1.00 49.09 ATOM 248 C THR G1321 72.838 -0.094 -30.252 1.00 53.19 ATOM 249 O THR G1321 73.158 -1.145 -29.700 1.00 57.96 ATOM 250 CB THR G1321 71.823 1.072 -28.325 1.00 51.77 ATOM 251 OG1 THR G1321 70.598 0.587 -28.877 1.00 52.82 ATOM 252 CG2 THR G1321 71.590 2.409 -27.667 1.00 51.29 ATOM 253 N GLY G1322 72.419 -0.051 -31.510 1.00 55.44 ATOM 254 CA GLY G1322 72.285 -1.271 -32.312 1.00 57.12 ATOM 255 C GLY G1322 71.319 -2.326 -31.765 1.00 61.45 ATOM 256 O GLY G1322 71.253 -3.441 -32.300 1.00 65.78 ATOM 257 ZN ZN G1401 71.244 11.153 -31.412 1.00 46.20 TER