HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN G 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 G 31 ALA ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN SEQRES 2 G 31 THR PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG SEQRES 3 G 31 LYS THR GLY HIS SER ATOM 1 N ALA G1323 70.605 -2.004 -30.698 1.00 54.46 ATOM 2 CA ALA G1323 69.674 -2.961 -30.111 1.00 56.24 ATOM 3 C ALA G1323 68.591 -3.389 -31.100 1.00 60.68 ATOM 4 O ALA G1323 68.185 -2.605 -31.946 1.00 66.90 ATOM 5 CB ALA G1323 69.055 -2.413 -28.832 1.00 54.07 ATOM 6 N ARG G1324 68.163 -4.638 -30.991 1.00 61.52 ATOM 7 CA ARG G1324 67.107 -5.203 -31.831 1.00 62.45 ATOM 8 C ARG G1324 66.073 -5.871 -30.930 1.00 63.12 ATOM 9 O ARG G1324 65.997 -7.105 -30.866 1.00 61.79 ATOM 10 CB ARG G1324 67.674 -6.185 -32.853 1.00 62.83 ATOM 11 CG ARG G1324 68.414 -5.477 -33.990 1.00 66.39 ATOM 12 CD ARG G1324 68.528 -6.280 -35.256 1.00 70.78 ATOM 13 NE ARG G1324 68.405 -5.311 -36.345 1.00 75.34 ATOM 14 CZ ARG G1324 68.041 -5.604 -37.576 1.00 75.96 ATOM 15 NH1 ARG G1324 67.944 -4.634 -38.489 1.00 72.79 ATOM 16 NH2 ARG G1324 67.772 -6.865 -37.877 1.00 78.35 ATOM 17 N PRO G1325 65.268 -5.061 -30.236 1.00 59.32 ATOM 18 CA PRO G1325 64.473 -5.607 -29.134 1.00 65.95 ATOM 19 C PRO G1325 63.365 -6.583 -29.534 1.00 66.89 ATOM 20 O PRO G1325 63.123 -7.544 -28.803 1.00 76.08 ATOM 21 CB PRO G1325 63.893 -4.355 -28.447 1.00 65.36 ATOM 22 CG PRO G1325 63.939 -3.289 -29.501 1.00 58.65 ATOM 23 CD PRO G1325 65.141 -3.606 -30.347 1.00 52.99 ATOM 24 N TYR G1326 62.684 -6.348 -30.659 1.00 65.01 ATOM 25 CA TYR G1326 61.456 -7.093 -30.929 1.00 62.42 ATOM 26 C TYR G1326 61.790 -8.453 -31.505 1.00 66.16 ATOM 27 O TYR G1326 62.308 -8.532 -32.615 1.00 75.22 ATOM 28 CB TYR G1326 60.525 -6.315 -31.818 1.00 53.36 ATOM 29 CG TYR G1326 60.323 -4.895 -31.382 1.00 53.47 ATOM 30 CD1 TYR G1326 59.359 -4.545 -30.406 1.00 53.33 ATOM 31 CD2 TYR G1326 61.072 -3.899 -31.956 1.00 51.66 ATOM 32 CE1 TYR G1326 59.199 -3.237 -30.014 1.00 51.02 ATOM 33 CE2 TYR G1326 60.897 -2.555 -31.602 1.00 48.46 ATOM 34 CZ TYR G1326 59.971 -2.237 -30.611 1.00 49.74 ATOM 35 OH TYR G1326 59.837 -0.916 -30.288 1.00 49.55 ATOM 36 N VAL G1327 61.537 -9.507 -30.729 1.00 68.67 ATOM 37 CA VAL G1327 61.951 -10.873 -31.032 1.00 74.29 ATOM 38 C VAL G1327 60.689 -11.736 -31.120 1.00 81.11 ATOM 39 O VAL G1327 59.889 -11.788 -30.174 1.00 79.18 ATOM 40 CB VAL G1327 62.906 -11.431 -29.926 1.00 76.90 ATOM 41 CG1 VAL G1327 62.931 -12.965 -29.904 1.00 69.44 ATOM 42 CG2 VAL G1327 64.322 -10.901 -30.101 1.00 81.57 ATOM 43 N CYS G1328 60.548 -12.439 -32.243 1.00 85.69 ATOM 44 CA CYS G1328 59.363 -13.260 -32.427 1.00 85.40 ATOM 45 C CYS G1328 59.325 -14.436 -31.443 1.00 78.90 ATOM 46 O CYS G1328 60.302 -15.134 -31.250 1.00 76.59 ATOM 47 CB CYS G1328 59.208 -13.768 -33.847 1.00 83.73 ATOM 48 SG CYS G1328 57.533 -14.447 -34.044 1.00 77.77 ATOM 49 N ALA G1329 58.140 -14.653 -30.898 1.00 73.96 ATOM 50 CA ALA G1329 57.852 -15.733 -29.953 1.00 72.66 ATOM 51 C ALA G1329 57.679 -17.122 -30.603 1.00 73.99 ATOM 52 O ALA G1329 57.543 -18.111 -29.894 1.00 67.55 ATOM 53 CB ALA G1329 56.616 -15.370 -29.133 1.00 68.72 ATOM 54 N GLU G1330 57.724 -17.155 -31.934 1.00 81.83 ATOM 55 CA GLU G1330 57.452 -18.377 -32.674 1.00 90.75 ATOM 56 C GLU G1330 58.656 -19.314 -32.680 1.00 95.62 ATOM 57 O GLU G1330 59.753 -18.869 -33.026 1.00100.11 ATOM 58 CB GLU G1330 56.997 -18.083 -34.099 1.00 85.57 ATOM 59 CG GLU G1330 56.588 -19.284 -34.904 1.00 82.74 ATOM 60 CD GLU G1330 55.245 -19.891 -34.467 1.00 85.79 ATOM 61 OE1 GLU G1330 54.650 -19.403 -33.475 1.00 80.67 ATOM 62 OE2 GLU G1330 54.790 -20.859 -35.112 1.00 86.87 ATOM 63 N PRO G1331 58.468 -20.603 -32.308 1.00 93.78 ATOM 64 CA PRO G1331 59.565 -21.575 -32.418 1.00 90.97 ATOM 65 C PRO G1331 60.055 -21.761 -33.846 1.00 88.21 ATOM 66 O PRO G1331 59.266 -21.787 -34.774 1.00 87.93 ATOM 67 CB PRO G1331 58.955 -22.877 -31.882 1.00 93.46 ATOM 68 CG PRO G1331 57.714 -22.491 -31.148 1.00 91.01 ATOM 69 CD PRO G1331 57.403 -21.039 -31.377 1.00 90.56 ATOM 70 N ASP G1332 61.376 -21.868 -34.015 1.00 85.38 ATOM 71 CA ASP G1332 62.029 -21.933 -35.335 1.00 80.56 ATOM 72 C ASP G1332 61.677 -20.765 -36.265 1.00 87.33 ATOM 73 O ASP G1332 61.661 -20.908 -37.466 1.00 95.46 ATOM 74 CB ASP G1332 61.730 -23.283 -36.021 1.00 78.12 ATOM 75 CG ASP G1332 62.418 -24.453 -35.355 1.00 73.70 ATOM 76 OD1 ASP G1332 62.701 -24.433 -34.131 1.00 72.34 ATOM 77 OD2 ASP G1332 62.724 -25.421 -36.105 1.00 62.32 ATOM 78 N CYS G1333 61.320 -19.632 -35.685 1.00 87.99 ATOM 79 CA CYS G1333 61.316 -18.373 -36.393 1.00 82.61 ATOM 80 C CYS G1333 62.432 -17.519 -35.797 1.00 87.40 ATOM 81 O CYS G1333 63.564 -17.584 -36.311 1.00 86.91 ATOM 82 CB CYS G1333 59.956 -17.701 -36.301 1.00 70.82 ATOM 83 SG CYS G1333 59.981 -16.147 -37.255 1.00 80.79 ATOM 84 N GLY G1334 62.150 -16.761 -34.731 1.00 86.33 ATOM 85 CA GLY G1334 63.197 -16.027 -34.028 1.00 84.40 ATOM 86 C GLY G1334 64.003 -15.019 -34.830 1.00 89.16 ATOM 87 O GLY G1334 65.236 -15.040 -34.842 1.00 92.82 ATOM 88 N GLN G1335 63.298 -14.219 -35.622 1.00 82.46 ATOM 89 CA GLN G1335 63.911 -13.040 -36.219 1.00 77.46 ATOM 90 C GLN G1335 63.820 -11.898 -35.220 1.00 80.65 ATOM 91 O GLN G1335 63.064 -11.964 -34.224 1.00 87.61 ATOM 92 CB GLN G1335 63.208 -12.637 -37.509 1.00 73.08 ATOM 93 CG GLN G1335 63.449 -13.604 -38.654 1.00 71.87 ATOM 94 CD GLN G1335 62.217 -13.749 -39.499 1.00 75.36 ATOM 95 OE1 GLN G1335 61.411 -14.647 -39.285 1.00 69.06 ATOM 96 NE2 GLN G1335 62.040 -12.812 -40.453 1.00 71.49 ATOM 97 N THR G1336 64.588 -10.848 -35.484 1.00 73.27 ATOM 98 CA THR G1336 64.543 -9.645 -34.663 1.00 66.10 ATOM 99 C THR G1336 64.365 -8.442 -35.571 1.00 66.98 ATOM 100 O THR G1336 64.695 -8.472 -36.753 1.00 70.32 ATOM 101 CB THR G1336 65.833 -9.480 -33.844 1.00 62.77 ATOM 102 OG1 THR G1336 66.907 -9.126 -34.710 1.00 58.07 ATOM 103 CG2 THR G1336 66.172 -10.742 -33.076 1.00 64.19 ATOM 104 N PHE G1337 63.815 -7.379 -35.000 1.00 65.47 ATOM 105 CA PHE G1337 63.585 -6.121 -35.720 1.00 65.03 ATOM 106 C PHE G1337 63.809 -4.950 -34.790 1.00 61.67 ATOM 107 O PHE G1337 63.526 -5.038 -33.588 1.00 54.37 ATOM 108 CB PHE G1337 62.164 -6.077 -36.305 1.00 64.23 ATOM 109 CG PHE G1337 61.779 -7.323 -37.040 1.00 68.15 ATOM 110 CD1 PHE G1337 61.262 -8.432 -36.365 1.00 69.76 ATOM 111 CD2 PHE G1337 62.063 -7.457 -38.403 1.00 71.53 ATOM 112 CE1 PHE G1337 60.978 -9.602 -37.033 1.00 66.28 ATOM 113 CE2 PHE G1337 61.760 -8.617 -39.081 1.00 70.70 ATOM 114 CZ PHE G1337 61.204 -9.699 -38.396 1.00 72.25 ATOM 115 N ARG G1338 64.357 -3.872 -35.339 1.00 59.54 ATOM 116 CA ARG G1338 64.805 -2.748 -34.539 1.00 63.25 ATOM 117 C ARG G1338 63.626 -1.905 -34.093 1.00 72.41 ATOM 118 O ARG G1338 63.542 -1.508 -32.936 1.00 84.06 ATOM 119 CB ARG G1338 65.867 -1.934 -35.273 1.00 58.96 ATOM 120 CG ARG G1338 66.409 -0.732 -34.529 1.00 55.99 ATOM 121 CD ARG G1338 67.775 -0.357 -35.022 1.00 60.11 ATOM 122 NE ARG G1338 68.751 -1.401 -34.708 1.00 60.52 ATOM 123 CZ ARG G1338 69.869 -1.578 -35.395 1.00 57.20 ATOM 124 NH1 ARG G1338 70.707 -2.550 -35.030 1.00 48.53 ATOM 125 NH2 ARG G1338 70.142 -0.824 -36.463 1.00 55.03 ATOM 126 N PHE G1339 62.701 -1.648 -35.013 1.00 75.09 ATOM 127 CA PHE G1339 61.572 -0.745 -34.787 1.00 71.05 ATOM 128 C PHE G1339 60.244 -1.504 -34.784 1.00 77.66 ATOM 129 O PHE G1339 60.170 -2.649 -35.250 1.00 76.51 ATOM 130 CB PHE G1339 61.589 0.347 -35.845 1.00 63.79 ATOM 131 CG PHE G1339 62.944 0.911 -36.117 1.00 68.17 ATOM 132 CD1 PHE G1339 63.779 0.336 -37.084 1.00 67.44 ATOM 133 CD2 PHE G1339 63.398 2.024 -35.415 1.00 71.49 ATOM 134 CE1 PHE G1339 65.013 0.887 -37.371 1.00 66.93 ATOM 135 CE2 PHE G1339 64.642 2.590 -35.702 1.00 74.29 ATOM 136 CZ PHE G1339 65.451 2.016 -36.680 1.00 72.23 ATOM 137 N VAL G1340 59.207 -0.875 -34.257 1.00 84.62 ATOM 138 CA VAL G1340 57.908 -1.519 -34.044 1.00 85.25 ATOM 139 C VAL G1340 57.265 -1.887 -35.358 1.00 78.21 ATOM 140 O VAL G1340 56.736 -3.012 -35.549 1.00 66.48 ATOM 141 CB VAL G1340 56.922 -0.647 -33.228 1.00 89.66 ATOM 142 CG1 VAL G1340 57.374 -0.498 -31.789 1.00 96.75 ATOM 143 CG2 VAL G1340 56.783 0.734 -33.832 1.00 92.27 ATOM 144 N SER G1341 57.328 -0.928 -36.282 1.00 73.47 ATOM 145 CA SER G1341 56.667 -1.072 -37.580 1.00 69.62 ATOM 146 C SER G1341 57.124 -2.374 -38.218 1.00 68.56 ATOM 147 O SER G1341 56.306 -3.168 -38.687 1.00 76.23 ATOM 148 CB SER G1341 57.002 0.121 -38.472 1.00 62.74 ATOM 149 OG SER G1341 55.930 0.349 -39.373 1.00 59.67 ATOM 150 N ASP G1342 58.437 -2.608 -38.203 1.00 65.60 ATOM 151 CA ASP G1342 59.007 -3.775 -38.819 1.00 72.19 ATOM 152 C ASP G1342 58.442 -5.062 -38.176 1.00 68.65 ATOM 153 O ASP G1342 58.099 -6.017 -38.877 1.00 76.13 ATOM 154 CB ASP G1342 60.524 -3.707 -38.734 1.00 78.02 ATOM 155 CG ASP G1342 61.098 -2.433 -39.346 1.00 84.81 ATOM 156 OD1 ASP G1342 60.395 -1.700 -40.082 1.00 86.06 ATOM 157 OD2 ASP G1342 62.277 -2.153 -39.085 1.00 82.43 ATOM 158 N PHE G1343 58.310 -5.071 -36.856 1.00 65.21 ATOM 159 CA PHE G1343 57.822 -6.256 -36.171 1.00 63.62 ATOM 160 C PHE G1343 56.346 -6.555 -36.449 1.00 62.94 ATOM 161 O PHE G1343 55.958 -7.719 -36.567 1.00 58.08 ATOM 162 CB PHE G1343 58.061 -6.180 -34.662 1.00 65.81 ATOM 163 CG PHE G1343 57.723 -7.475 -33.927 1.00 66.84 ATOM 164 CD1 PHE G1343 58.119 -8.702 -34.464 1.00 68.97 ATOM 165 CD2 PHE G1343 56.881 -7.475 -32.830 1.00 62.22 ATOM 166 CE1 PHE G1343 57.802 -9.912 -33.824 1.00 74.78 ATOM 167 CE2 PHE G1343 56.552 -8.669 -32.170 1.00 66.37 ATOM 168 CZ PHE G1343 57.004 -9.896 -32.673 1.00 70.61 ATOM 169 N SER G1344 55.508 -5.524 -36.519 1.00 64.28 ATOM 170 CA SER G1344 54.073 -5.787 -36.740 1.00 59.13 ATOM 171 C SER G1344 53.785 -6.108 -38.194 1.00 57.58 ATOM 172 O SER G1344 52.895 -6.939 -38.489 1.00 45.13 ATOM 173 CB SER G1344 53.238 -4.616 -36.249 1.00 64.35 ATOM 174 OG SER G1344 53.322 -4.528 -34.842 1.00 62.71 ATOM 175 N ARG G1345 54.509 -5.446 -39.117 1.00 52.98 ATOM 176 CA ARG G1345 54.562 -5.915 -40.505 1.00 50.50 ATOM 177 C ARG G1345 54.877 -7.383 -40.535 1.00 49.60 ATOM 178 O ARG G1345 54.159 -8.142 -41.209 1.00 50.03 ATOM 179 CB ARG G1345 55.638 -5.148 -41.259 1.00 53.50 ATOM 180 CG ARG G1345 56.221 -5.866 -42.469 1.00 50.32 ATOM 181 CD ARG G1345 57.272 -5.090 -43.163 1.00 47.87 ATOM 182 NE ARG G1345 56.690 -3.937 -43.851 1.00 44.05 ATOM 183 CZ ARG G1345 57.149 -2.684 -43.786 1.00 43.57 ATOM 184 NH1 ARG G1345 58.225 -2.374 -43.038 1.00 37.03 ATOM 185 NH2 ARG G1345 56.544 -1.721 -44.506 1.00 40.27 ATOM 186 N HIS G1346 55.906 -7.798 -39.802 1.00 50.85 ATOM 187 CA HIS G1346 56.255 -9.227 -39.740 1.00 51.58 ATOM 188 C HIS G1346 55.057 -10.107 -39.289 1.00 57.44 ATOM 189 O HIS G1346 54.696 -11.039 -39.993 1.00 60.09 ATOM 190 CB HIS G1346 57.449 -9.456 -38.807 1.00 43.10 ATOM 191 CG HIS G1346 57.717 -10.902 -38.530 1.00 37.63 ATOM 192 ND1 HIS G1346 58.613 -11.636 -39.259 1.00 36.45 ATOM 193 CD2 HIS G1346 57.132 -11.775 -37.669 1.00 37.83 ATOM 194 CE1 HIS G1346 58.595 -12.885 -38.839 1.00 37.20 ATOM 195 NE2 HIS G1346 57.720 -12.989 -37.866 1.00 38.03 ATOM 196 N LYS G1347 54.456 -9.765 -38.141 1.00 58.07 ATOM 197 CA LYS G1347 53.376 -10.599 -37.604 1.00 54.84 ATOM 198 C LYS G1347 52.222 -10.759 -38.580 1.00 52.01 ATOM 199 O LYS G1347 51.707 -11.874 -38.809 1.00 38.30 ATOM 200 CB LYS G1347 52.837 -10.053 -36.284 1.00 58.23 ATOM 201 CG LYS G1347 51.385 -10.373 -35.922 1.00 66.65 ATOM 202 CD LYS G1347 51.141 -11.897 -35.730 1.00 69.86 ATOM 203 CE LYS G1347 49.970 -12.106 -34.779 1.00 69.09 ATOM 204 NZ LYS G1347 49.621 -13.536 -34.506 1.00 65.42 ATOM 205 N ARG G1348 51.824 -9.636 -39.186 1.00 53.75 ATOM 206 CA ARG G1348 50.702 -9.711 -40.140 1.00 50.24 ATOM 207 C ARG G1348 51.090 -10.598 -41.314 1.00 43.83 ATOM 208 O ARG G1348 50.351 -11.527 -41.663 1.00 45.88 ATOM 209 CB ARG G1348 50.247 -8.358 -40.592 1.00 50.86 ATOM 210 CG ARG G1348 49.422 -8.393 -41.843 1.00 56.71 ATOM 211 CD ARG G1348 49.127 -6.969 -42.290 1.00 60.88 ATOM 212 NE ARG G1348 50.042 -5.964 -41.740 1.00 63.60 ATOM 213 CZ ARG G1348 51.160 -5.537 -42.332 1.00 61.80 ATOM 214 NH1 ARG G1348 51.889 -4.633 -41.707 1.00 56.38 ATOM 215 NH2 ARG G1348 51.592 -6.143 -43.449 1.00 62.41 ATOM 216 N LYS G1349 52.287 -10.392 -41.803 1.00 40.54 ATOM 217 CA LYS G1349 52.819 -11.235 -42.897 1.00 40.69 ATOM 218 C LYS G1349 53.053 -12.688 -42.479 1.00 47.47 ATOM 219 O LYS G1349 53.345 -13.503 -43.343 1.00 51.75 ATOM 220 CB LYS G1349 54.094 -10.619 -43.484 1.00 32.77 ATOM 221 CG LYS G1349 53.869 -9.240 -44.117 1.00 29.06 ATOM 222 CD LYS G1349 54.488 -9.153 -45.505 1.00 29.89 ATOM 223 CE LYS G1349 55.918 -9.730 -45.615 1.00 27.59 ATOM 224 NZ LYS G1349 56.282 -10.082 -47.033 1.00 26.54 ATOM 225 N THR G1350 52.913 -13.032 -41.185 1.00 54.88 ATOM 226 CA THR G1350 53.339 -14.345 -40.708 1.00 56.51 ATOM 227 C THR G1350 52.358 -15.101 -39.804 1.00 63.58 ATOM 228 O THR G1350 52.251 -16.328 -39.853 1.00 54.82 ATOM 229 CB THR G1350 54.704 -14.224 -40.015 1.00 53.92 ATOM 230 OG1 THR G1350 55.301 -15.498 -40.060 1.00 61.78 ATOM 231 CG2 THR G1350 54.539 -13.722 -38.670 1.00 47.35 ATOM 232 N GLY G1351 51.609 -14.361 -38.979 1.00 74.42 ATOM 233 CA GLY G1351 50.638 -14.939 -38.048 1.00 78.62 ATOM 234 C GLY G1351 51.224 -15.389 -36.719 1.00 84.92 ATOM 235 O GLY G1351 50.536 -16.093 -35.969 1.00 84.31 ATOM 236 N HIS G1352 52.480 -15.029 -36.432 1.00 89.20 ATOM 237 CA HIS G1352 53.148 -15.478 -35.212 1.00 92.72 ATOM 238 C HIS G1352 52.864 -14.522 -34.057 1.00101.61 ATOM 239 O HIS G1352 52.945 -13.302 -34.234 1.00112.35 ATOM 240 CB HIS G1352 54.676 -15.543 -35.374 1.00 84.01 ATOM 241 CG HIS G1352 55.164 -16.386 -36.498 1.00 74.13 ATOM 242 ND1 HIS G1352 56.488 -16.422 -36.868 1.00 69.41 ATOM 243 CD2 HIS G1352 54.532 -17.276 -37.284 1.00 73.63 ATOM 244 CE1 HIS G1352 56.663 -17.304 -37.833 1.00 64.88 ATOM 245 NE2 HIS G1352 55.486 -17.833 -38.114 1.00 70.11 ATOM 246 N SER G1353 52.675 -15.074 -32.848 1.00107.51 ATOM 247 CA SER G1353 52.373 -14.307 -31.627 1.00106.89 ATOM 248 C SER G1353 51.069 -13.508 -31.759 1.00103.28 ATOM 249 O SER G1353 50.820 -12.469 -31.137 1.00 91.96 ATOM 250 CB SER G1353 53.551 -13.405 -31.207 1.00114.59 ATOM 251 OG SER G1353 54.806 -14.017 -31.386 1.00115.79 ATOM 252 ZN ZN G1402 58.443 -15.109 -36.940 1.00 86.04 TER