HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN N 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 N 28 ARG ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN PHE SEQRES 2 N 28 PHE SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL HIS SEQRES 3 N 28 SER ASP ATOM 1 N ARG N1265 106.235 16.631 -45.925 1.00 85.69 ATOM 2 CA ARG N1265 105.107 17.123 -46.686 1.00 94.78 ATOM 3 C ARG N1265 104.865 18.559 -46.237 1.00110.06 ATOM 4 O ARG N1265 105.819 19.296 -46.028 1.00109.16 ATOM 5 CB ARG N1265 103.877 16.233 -46.471 1.00 85.24 ATOM 6 CG ARG N1265 103.440 15.472 -47.708 1.00 76.35 ATOM 7 CD ARG N1265 103.041 14.029 -47.456 1.00 69.49 ATOM 8 NE ARG N1265 101.849 13.896 -46.650 1.00 64.49 ATOM 9 CZ ARG N1265 101.873 13.588 -45.362 1.00 65.86 ATOM 10 NH1 ARG N1265 100.754 13.461 -44.677 1.00 60.27 ATOM 11 NH2 ARG N1265 103.025 13.400 -44.752 1.00 63.67 ATOM 12 N ASN N1266 103.588 18.954 -46.115 1.00119.49 ATOM 13 CA ASN N1266 103.219 20.322 -45.665 1.00117.37 ATOM 14 C ASN N1266 103.167 21.027 -44.329 1.00115.91 ATOM 15 O ASN N1266 102.516 20.548 -43.438 1.00109.68 ATOM 16 CB ASN N1266 101.814 19.981 -46.117 1.00113.59 ATOM 17 CG ASN N1266 101.776 19.377 -47.504 1.00119.62 ATOM 18 OD1 ASN N1266 101.822 20.100 -48.490 1.00118.38 ATOM 19 ND2 ASN N1266 101.574 18.076 -47.579 1.00118.12 ATOM 20 N ILE N1267 103.882 22.137 -44.153 1.00122.35 ATOM 21 CA ILE N1267 103.924 22.921 -42.922 1.00123.29 ATOM 22 C ILE N1267 104.162 24.411 -43.204 1.00119.13 ATOM 23 O ILE N1267 104.954 24.753 -44.069 1.00114.26 ATOM 24 CB ILE N1267 105.083 22.407 -41.977 1.00128.23 ATOM 25 CG1 ILE N1267 104.773 21.042 -41.373 1.00132.91 ATOM 26 CG2 ILE N1267 105.371 23.317 -40.823 1.00128.97 ATOM 27 CD1 ILE N1267 103.674 21.027 -40.322 1.00133.89 ATOM 28 N CYS N1268 103.425 25.263 -42.499 1.00115.95 ATOM 29 CA CYS N1268 103.561 26.719 -42.563 1.00116.78 ATOM 30 C CYS N1268 104.928 27.194 -42.056 1.00113.39 ATOM 31 O CYS N1268 105.319 26.800 -40.975 1.00110.64 ATOM 32 CB CYS N1268 102.406 27.387 -41.743 1.00121.28 ATOM 33 SG CYS N1268 101.004 28.139 -42.655 1.00125.14 ATOM 34 N PRO N1269 105.589 28.114 -42.775 1.00109.90 ATOM 35 CA PRO N1269 106.943 28.520 -42.398 1.00104.34 ATOM 36 C PRO N1269 107.080 29.391 -41.135 1.00103.94 ATOM 37 O PRO N1269 108.189 29.621 -40.678 1.00111.23 ATOM 38 CB PRO N1269 107.422 29.302 -43.634 1.00100.02 ATOM 39 CG PRO N1269 106.186 29.851 -44.236 1.00 98.09 ATOM 40 CD PRO N1269 105.142 28.818 -44.004 1.00108.96 ATOM 41 N ILE N1270 105.981 29.813 -40.546 1.00 95.17 ATOM 42 CA ILE N1270 105.989 30.854 -39.509 1.00 86.40 ATOM 43 C ILE N1270 106.248 30.300 -38.109 1.00 78.79 ATOM 44 O ILE N1270 105.737 29.217 -37.782 1.00 79.52 ATOM 45 CB ILE N1270 104.690 31.688 -39.469 1.00 84.46 ATOM 46 CG1 ILE N1270 104.180 32.068 -40.849 1.00 80.78 ATOM 47 CG2 ILE N1270 104.903 32.974 -38.683 1.00 80.41 ATOM 48 CD1 ILE N1270 103.083 31.126 -41.284 1.00 71.78 ATOM 49 N LYS N1271 107.093 30.962 -37.339 1.00 73.31 ATOM 50 CA LYS N1271 107.130 30.903 -35.916 1.00 67.20 ATOM 51 C LYS N1271 105.719 31.132 -35.319 1.00 73.65 ATOM 52 O LYS N1271 105.141 32.243 -35.417 1.00 72.52 ATOM 53 CB LYS N1271 108.102 31.989 -35.385 1.00 60.53 ATOM 54 CG LYS N1271 109.146 32.568 -36.330 1.00 53.41 ATOM 55 CD LYS N1271 110.043 31.487 -36.872 1.00 46.48 ATOM 56 CE LYS N1271 110.689 31.940 -38.164 1.00 43.99 ATOM 57 NZ LYS N1271 109.761 31.598 -39.278 1.00 42.53 ATOM 58 N GLY N1272 105.231 30.117 -34.617 1.00 76.62 ATOM 59 CA GLY N1272 103.969 30.232 -33.912 1.00 79.48 ATOM 60 C GLY N1272 102.715 29.950 -34.710 1.00 87.24 ATOM 61 O GLY N1272 101.620 30.152 -34.212 1.00 88.32 ATOM 62 N CYS N1273 102.849 29.511 -35.959 1.00 90.46 ATOM 63 CA CYS N1273 101.739 28.997 -36.763 1.00 86.93 ATOM 64 C CYS N1273 102.016 27.549 -37.163 1.00 83.66 ATOM 65 O CYS N1273 101.382 26.649 -36.602 1.00 82.77 ATOM 66 CB CYS N1273 101.464 29.926 -37.965 1.00 85.30 ATOM 67 SG CYS N1273 100.420 29.300 -39.297 1.00 72.19 ATOM 68 N GLY N1274 102.955 27.312 -38.088 1.00 81.81 ATOM 69 CA GLY N1274 103.383 25.969 -38.440 1.00 78.10 ATOM 70 C GLY N1274 102.290 24.934 -38.682 1.00 73.86 ATOM 71 O GLY N1274 102.441 23.770 -38.340 1.00 65.98 ATOM 72 N LYS N1275 101.170 25.401 -39.214 1.00 76.43 ATOM 73 CA LYS N1275 100.021 24.531 -39.487 1.00 86.28 ATOM 74 C LYS N1275 100.298 23.571 -40.632 1.00 98.39 ATOM 75 O LYS N1275 101.195 23.811 -41.462 1.00103.61 ATOM 76 CB LYS N1275 98.752 25.343 -39.766 1.00 79.75 ATOM 77 CG LYS N1275 98.254 26.185 -38.600 1.00 65.77 ATOM 78 CD LYS N1275 96.793 26.548 -38.757 1.00 58.77 ATOM 79 CE LYS N1275 96.290 27.076 -37.424 1.00 53.46 ATOM 80 NZ LYS N1275 94.811 27.267 -37.313 1.00 45.69 ATOM 81 N ASN N1276 99.501 22.498 -40.674 1.00105.13 ATOM 82 CA ASN N1276 99.593 21.476 -41.717 1.00106.92 ATOM 83 C ASN N1276 98.381 21.550 -42.654 1.00109.15 ATOM 84 O ASN N1276 97.260 21.678 -42.206 1.00107.33 ATOM 85 CB ASN N1276 99.716 20.088 -41.074 1.00 99.43 ATOM 86 CG ASN N1276 99.367 18.966 -42.049 1.00 98.05 ATOM 87 OD1 ASN N1276 100.156 18.630 -42.965 1.00 94.12 ATOM 88 ND2 ASN N1276 98.164 18.424 -41.907 1.00 99.01 ATOM 89 N PHE N1277 98.651 21.426 -43.945 1.00117.89 ATOM 90 CA PHE N1277 97.630 21.541 -45.002 1.00124.79 ATOM 91 C PHE N1277 97.800 20.414 -45.998 1.00125.28 ATOM 92 O PHE N1277 98.911 20.132 -46.416 1.00132.11 ATOM 93 CB PHE N1277 97.757 22.869 -45.770 1.00126.56 ATOM 94 CG PHE N1277 97.840 24.088 -44.893 1.00125.86 ATOM 95 CD1 PHE N1277 96.725 24.504 -44.164 1.00120.26 ATOM 96 CD2 PHE N1277 99.057 24.791 -44.756 1.00126.57 ATOM 97 CE1 PHE N1277 96.820 25.588 -43.307 1.00121.91 ATOM 98 CE2 PHE N1277 99.141 25.867 -43.902 1.00127.15 ATOM 99 CZ PHE N1277 98.007 26.311 -43.218 1.00119.07 ATOM 100 N PHE N1278 96.692 19.822 -46.435 1.00125.75 ATOM 101 CA PHE N1278 96.689 18.732 -47.443 1.00129.66 ATOM 102 C PHE N1278 97.439 19.078 -48.727 1.00130.58 ATOM 103 O PHE N1278 98.070 18.227 -49.304 1.00135.55 ATOM 104 CB PHE N1278 95.257 18.367 -47.764 1.00134.86 ATOM 105 CG PHE N1278 94.476 19.525 -48.303 1.00146.92 ATOM 106 CD1 PHE N1278 93.863 20.462 -47.424 1.00148.53 ATOM 107 CD2 PHE N1278 94.332 19.707 -49.654 1.00151.76 ATOM 108 CE1 PHE N1278 93.176 21.551 -47.913 1.00150.93 ATOM 109 CE2 PHE N1278 93.607 20.802 -50.162 1.00159.80 ATOM 110 CZ PHE N1278 93.038 21.723 -49.285 1.00157.54 ATOM 111 N SER N1279 97.393 20.346 -49.145 1.00130.84 ATOM 112 CA SER N1279 98.156 20.857 -50.285 1.00127.40 ATOM 113 C SER N1279 98.885 22.149 -49.883 1.00125.55 ATOM 114 O SER N1279 98.888 22.553 -48.702 1.00120.74 ATOM 115 CB SER N1279 97.209 21.098 -51.476 1.00124.36 ATOM 116 OG SER N1279 96.648 22.398 -51.404 1.00122.66 ATOM 117 N HIS N1280 99.587 22.792 -50.826 1.00119.09 ATOM 118 CA HIS N1280 100.451 23.859 -50.492 1.00118.68 ATOM 119 C HIS N1280 100.422 25.082 -51.373 1.00123.25 ATOM 120 O HIS N1280 100.828 26.166 -50.932 1.00134.18 ATOM 121 CB HIS N1280 101.889 23.361 -50.339 1.00120.49 ATOM 122 CG HIS N1280 102.300 23.165 -48.920 1.00128.61 ATOM 123 ND1 HIS N1280 103.619 23.044 -48.543 1.00127.56 ATOM 124 CD2 HIS N1280 101.569 23.057 -47.787 1.00132.82 ATOM 125 CE1 HIS N1280 103.685 22.876 -47.234 1.00125.91 ATOM 126 NE2 HIS N1280 102.457 22.902 -46.749 1.00132.01 ATOM 127 N LYS N1281 99.927 24.969 -52.597 1.00123.91 ATOM 128 CA LYS N1281 99.394 26.174 -53.280 1.00114.41 ATOM 129 C LYS N1281 98.457 26.966 -52.341 1.00115.39 ATOM 130 O LYS N1281 98.495 28.157 -52.288 1.00104.95 ATOM 131 CB LYS N1281 98.743 25.765 -54.601 1.00105.68 ATOM 132 CG LYS N1281 99.581 26.188 -55.829 1.00 90.64 ATOM 133 CD LYS N1281 99.788 25.221 -57.003 1.00 82.61 ATOM 134 CE LYS N1281 100.912 25.815 -57.841 1.00 74.55 ATOM 135 NZ LYS N1281 101.716 24.902 -58.715 1.00 68.15 ATOM 136 N TYR N1282 97.677 26.243 -51.558 1.00118.71 ATOM 137 CA TYR N1282 96.928 26.848 -50.488 1.00117.86 ATOM 138 C TYR N1282 97.791 27.493 -49.416 1.00111.73 ATOM 139 O TYR N1282 97.306 28.396 -48.735 1.00104.97 ATOM 140 CB TYR N1282 95.951 25.847 -49.865 1.00126.05 ATOM 141 CG TYR N1282 95.138 26.415 -48.735 1.00135.69 ATOM 142 CD1 TYR N1282 94.272 27.496 -48.938 1.00134.91 ATOM 143 CD2 TYR N1282 95.223 25.853 -47.447 1.00136.85 ATOM 144 CE1 TYR N1282 93.526 28.019 -47.893 1.00127.61 ATOM 145 CE2 TYR N1282 94.459 26.364 -46.405 1.00128.95 ATOM 146 CZ TYR N1282 93.619 27.447 -46.640 1.00122.32 ATOM 147 OH TYR N1282 92.868 27.960 -45.624 1.00114.22 ATOM 148 N LEU N1283 99.033 27.025 -49.273 1.00116.15 ATOM 149 CA LEU N1283 99.889 27.592 -48.243 1.00123.52 ATOM 150 C LEU N1283 100.413 28.928 -48.723 1.00121.08 ATOM 151 O LEU N1283 100.583 29.838 -47.863 1.00109.68 ATOM 152 CB LEU N1283 101.035 26.618 -47.872 1.00134.58 ATOM 153 CG LEU N1283 102.028 27.059 -46.773 1.00144.73 ATOM 154 CD1 LEU N1283 102.486 25.952 -45.896 1.00150.61 ATOM 155 CD2 LEU N1283 103.189 27.758 -47.458 1.00145.27 ATOM 156 N VAL N1284 100.742 29.070 -50.007 1.00118.46 ATOM 157 CA VAL N1284 101.263 30.377 -50.434 1.00123.84 ATOM 158 C VAL N1284 100.177 31.450 -50.296 1.00126.21 ATOM 159 O VAL N1284 100.380 32.485 -49.624 1.00124.81 ATOM 160 CB VAL N1284 101.902 30.358 -51.828 1.00124.63 ATOM 161 CG1 VAL N1284 100.874 30.216 -52.942 1.00121.18 ATOM 162 CG2 VAL N1284 102.814 31.559 -52.033 1.00116.81 ATOM 163 N GLN N1285 98.984 31.173 -50.826 1.00120.43 ATOM 164 CA GLN N1285 97.849 32.070 -50.665 1.00105.49 ATOM 165 C GLN N1285 97.479 32.305 -49.211 1.00106.42 ATOM 166 O GLN N1285 97.187 33.454 -48.831 1.00105.05 ATOM 167 CB GLN N1285 96.660 31.557 -51.456 1.00 96.36 ATOM 168 CG GLN N1285 96.857 31.687 -52.965 1.00 86.92 ATOM 169 CD GLN N1285 95.552 31.754 -53.735 1.00 81.61 ATOM 170 OE1 GLN N1285 95.242 32.765 -54.361 1.00 79.76 ATOM 171 NE2 GLN N1285 94.757 30.707 -53.633 1.00 80.78 ATOM 172 N HIS N1286 97.528 31.256 -48.394 1.00100.68 ATOM 173 CA HIS N1286 97.191 31.404 -46.973 1.00 90.07 ATOM 174 C HIS N1286 98.080 32.435 -46.250 1.00 88.67 ATOM 175 O HIS N1286 97.709 32.944 -45.203 1.00 86.34 ATOM 176 CB HIS N1286 97.280 30.069 -46.220 1.00 84.20 ATOM 177 CG HIS N1286 96.956 30.207 -44.769 1.00 82.65 ATOM 178 ND1 HIS N1286 97.784 30.797 -43.827 1.00 83.29 ATOM 179 CD2 HIS N1286 95.865 29.794 -44.083 1.00 83.86 ATOM 180 CE1 HIS N1286 97.209 30.753 -42.643 1.00 84.43 ATOM 181 NE2 HIS N1286 96.032 30.174 -42.773 1.00 78.32 ATOM 182 N GLN N1287 99.231 32.787 -46.829 1.00 81.44 ATOM 183 CA GLN N1287 100.083 33.705 -46.124 1.00 81.00 ATOM 184 C GLN N1287 99.711 35.149 -46.367 1.00 80.82 ATOM 185 O GLN N1287 100.406 36.057 -45.879 1.00 71.34 ATOM 186 CB GLN N1287 101.556 33.450 -46.440 1.00 81.58 ATOM 187 CG GLN N1287 102.486 33.919 -45.352 1.00 72.37 ATOM 188 CD GLN N1287 102.554 32.951 -44.197 1.00 73.68 ATOM 189 OE1 GLN N1287 103.530 32.192 -44.076 1.00 76.48 ATOM 190 NE2 GLN N1287 101.548 32.945 -43.352 1.00 68.69 ATOM 191 N ARG N1288 98.624 35.422 -47.095 1.00 92.92 ATOM 192 CA ARG N1288 98.054 36.771 -47.016 1.00 90.96 ATOM 193 C ARG N1288 97.746 37.118 -45.541 1.00 91.04 ATOM 194 O ARG N1288 97.908 38.255 -45.136 1.00 91.53 ATOM 195 CB ARG N1288 96.850 36.894 -47.922 1.00 86.82 ATOM 196 CG ARG N1288 95.646 36.082 -47.513 1.00 94.42 ATOM 197 CD ARG N1288 94.545 36.212 -48.547 1.00100.27 ATOM 198 NE ARG N1288 94.582 35.064 -49.449 1.00 96.95 ATOM 199 CZ ARG N1288 93.826 34.942 -50.536 1.00 85.78 ATOM 200 NH1 ARG N1288 92.977 35.921 -50.858 1.00 76.75 ATOM 201 NH2 ARG N1288 93.906 33.854 -51.272 1.00 84.37 ATOM 202 N VAL N1289 97.323 36.121 -44.762 1.00 86.91 ATOM 203 CA VAL N1289 97.082 36.224 -43.337 1.00 83.98 ATOM 204 C VAL N1289 98.134 37.040 -42.595 1.00 87.95 ATOM 205 O VAL N1289 97.816 37.811 -41.693 1.00 92.80 ATOM 206 CB VAL N1289 96.957 34.818 -42.682 1.00 75.68 ATOM 207 CG1 VAL N1289 96.965 34.877 -41.160 1.00 69.63 ATOM 208 CG2 VAL N1289 95.733 34.103 -43.208 1.00 74.83 ATOM 209 N HIS N1290 99.398 36.856 -42.948 1.00 89.69 ATOM 210 CA HIS N1290 100.444 37.516 -42.188 1.00100.04 ATOM 211 C HIS N1290 100.868 38.850 -42.803 1.00100.77 ATOM 212 O HIS N1290 101.630 39.552 -42.168 1.00106.64 ATOM 213 CB HIS N1290 101.593 36.528 -41.931 1.00105.50 ATOM 214 CG HIS N1290 101.177 35.375 -41.059 1.00108.99 ATOM 215 ND1 HIS N1290 101.461 35.336 -39.709 1.00110.21 ATOM 216 CD2 HIS N1290 100.464 34.248 -41.319 1.00111.43 ATOM 217 CE1 HIS N1290 100.963 34.230 -39.182 1.00108.85 ATOM 218 NE2 HIS N1290 100.350 33.556 -40.137 1.00113.47 ATOM 219 N SER N1291 100.390 39.190 -43.999 1.00 95.99 ATOM 220 CA SER N1291 100.461 40.589 -44.450 1.00 86.19 ATOM 221 C SER N1291 99.163 41.270 -44.102 1.00 84.74 ATOM 222 O SER N1291 98.098 40.656 -44.115 1.00 82.46 ATOM 223 CB SER N1291 100.711 40.727 -45.931 1.00 88.30 ATOM 224 OG SER N1291 101.148 42.056 -46.204 1.00 90.32 ATOM 225 N ASP N1292 99.278 42.534 -43.711 1.00 86.58 ATOM 226 CA ASP N1292 98.101 43.304 -43.308 1.00 83.52 ATOM 227 C ASP N1292 97.469 44.055 -44.450 1.00 77.71 ATOM 228 O ASP N1292 96.437 44.712 -44.262 1.00 77.28 ATOM 229 CB ASP N1292 98.421 44.207 -42.096 1.00 85.81 ATOM 230 CG ASP N1292 98.360 43.437 -40.763 1.00 84.26 ATOM 231 OD1 ASP N1292 97.598 42.432 -40.629 1.00 83.03 ATOM 232 OD2 ASP N1292 99.118 43.812 -39.855 1.00 83.12 ATOM 233 ZN ZN N1403 100.611 30.620 -42.195 1.00153.74 TER