HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN N 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 N 30 ASP ARG PRO LEU LYS CYS PRO TRP LYS GLY CYS LYS MET SEQRES 2 N 30 THR PHE LYS TRP ALA TRP SER ARG THR GLU HIS ILE ARG SEQRES 3 N 30 VAL HIS THR GLY ATOM 1 N ASP N1293 98.061 43.981 -45.631 1.00 74.55 ATOM 2 CA ASP N1293 97.498 44.624 -46.821 1.00 68.31 ATOM 3 C ASP N1293 96.087 44.089 -47.106 1.00 65.92 ATOM 4 O ASP N1293 95.742 42.963 -46.753 1.00 65.13 ATOM 5 CB ASP N1293 98.440 44.445 -48.016 1.00 64.09 ATOM 6 CG ASP N1293 98.396 45.627 -48.966 1.00 67.77 ATOM 7 OD1 ASP N1293 97.471 46.474 -48.850 1.00 70.46 ATOM 8 OD2 ASP N1293 99.310 45.730 -49.831 1.00 61.13 ATOM 9 N ARG N1294 95.270 44.900 -47.756 1.00 63.01 ATOM 10 CA ARG N1294 93.835 44.616 -47.887 1.00 65.53 ATOM 11 C ARG N1294 93.271 44.723 -49.324 1.00 69.01 ATOM 12 O ARG N1294 92.946 45.841 -49.782 1.00 70.21 ATOM 13 CB ARG N1294 93.097 45.599 -46.961 1.00 64.32 ATOM 14 CG ARG N1294 91.968 44.982 -46.193 1.00 66.40 ATOM 15 CD ARG N1294 92.432 44.389 -44.884 1.00 68.68 ATOM 16 NE ARG N1294 91.354 43.630 -44.227 1.00 68.43 ATOM 17 CZ ARG N1294 91.136 43.551 -42.911 1.00 61.32 ATOM 18 NH1 ARG N1294 91.865 44.261 -42.059 1.00 53.38 ATOM 19 NH2 ARG N1294 90.137 42.793 -42.451 1.00 61.67 ATOM 20 N PRO N1295 93.102 43.570 -50.024 1.00 65.84 ATOM 21 CA PRO N1295 92.716 43.639 -51.450 1.00 59.88 ATOM 22 C PRO N1295 91.228 43.993 -51.732 1.00 53.35 ATOM 23 O PRO N1295 90.901 44.969 -52.368 1.00 47.22 ATOM 24 CB PRO N1295 93.069 42.256 -52.012 1.00 57.98 ATOM 25 CG PRO N1295 93.324 41.380 -50.826 1.00 59.13 ATOM 26 CD PRO N1295 93.468 42.216 -49.584 1.00 65.71 ATOM 27 N LEU N1296 90.351 43.185 -51.169 1.00 44.61 ATOM 28 CA LEU N1296 88.984 43.071 -51.666 1.00 39.98 ATOM 29 C LEU N1296 88.106 44.104 -50.999 1.00 37.19 ATOM 30 O LEU N1296 87.690 43.905 -49.837 1.00 47.04 ATOM 31 CB LEU N1296 88.442 41.647 -51.416 1.00 36.67 ATOM 32 CG LEU N1296 89.398 40.488 -51.742 1.00 35.46 ATOM 33 CD1 LEU N1296 88.683 39.171 -51.533 1.00 34.06 ATOM 34 CD2 LEU N1296 89.964 40.569 -53.160 1.00 35.57 ATOM 35 N LYS N1297 87.705 45.135 -51.725 1.00 32.69 ATOM 36 CA LYS N1297 86.838 46.176 -51.207 1.00 31.49 ATOM 37 C LYS N1297 85.412 45.646 -51.034 1.00 34.63 ATOM 38 O LYS N1297 85.018 44.646 -51.683 1.00 29.98 ATOM 39 CB LYS N1297 86.860 47.365 -52.150 1.00 30.68 ATOM 40 CG LYS N1297 88.245 47.777 -52.671 1.00 31.55 ATOM 41 CD LYS N1297 89.258 48.220 -51.587 1.00 32.95 ATOM 42 CE LYS N1297 88.725 49.338 -50.683 1.00 32.24 ATOM 43 NZ LYS N1297 88.032 50.483 -51.342 1.00 29.79 ATOM 44 N CYS N1298 84.640 46.262 -50.116 1.00 34.67 ATOM 45 CA CYS N1298 83.210 46.037 -50.098 1.00 31.80 ATOM 46 C CYS N1298 82.596 46.756 -51.284 1.00 27.93 ATOM 47 O CYS N1298 83.006 47.889 -51.619 1.00 26.27 ATOM 48 CB CYS N1298 82.592 46.587 -48.829 1.00 37.14 ATOM 49 SG CYS N1298 80.812 46.289 -48.651 1.00 39.49 ATOM 50 N PRO N1299 81.618 46.106 -51.948 1.00 25.09 ATOM 51 CA PRO N1299 80.973 46.736 -53.094 1.00 23.33 ATOM 52 C PRO N1299 79.838 47.678 -52.714 1.00 23.82 ATOM 53 O PRO N1299 79.404 48.428 -53.599 1.00 23.72 ATOM 54 CB PRO N1299 80.448 45.575 -53.897 1.00 22.42 ATOM 55 CG PRO N1299 80.248 44.498 -52.906 1.00 23.39 ATOM 56 CD PRO N1299 81.245 44.693 -51.803 1.00 24.73 ATOM 57 N TRP N1300 79.451 47.732 -51.428 1.00 21.96 ATOM 58 CA TRP N1300 78.393 48.621 -51.018 1.00 23.18 ATOM 59 C TRP N1300 78.829 50.063 -50.916 1.00 26.01 ATOM 60 O TRP N1300 79.756 50.386 -50.235 1.00 25.66 ATOM 61 CB TRP N1300 77.803 48.171 -49.696 1.00 22.71 ATOM 62 CG TRP N1300 76.378 48.540 -49.516 1.00 21.42 ATOM 63 CD1 TRP N1300 75.908 49.615 -48.826 1.00 20.59 ATOM 64 CD2 TRP N1300 75.251 47.846 -50.017 1.00 20.79 ATOM 65 NE1 TRP N1300 74.539 49.588 -48.796 1.00 19.42 ATOM 66 CE2 TRP N1300 74.101 48.525 -49.542 1.00 20.75 ATOM 67 CE3 TRP N1300 75.087 46.710 -50.812 1.00 21.93 ATOM 68 CZ2 TRP N1300 72.791 48.104 -49.835 1.00 20.35 ATOM 69 CZ3 TRP N1300 73.757 46.286 -51.124 1.00 22.35 ATOM 70 CH2 TRP N1300 72.640 46.989 -50.622 1.00 20.87 ATOM 71 N LYS N1301 78.057 50.938 -51.580 1.00 29.31 ATOM 72 CA LYS N1301 78.353 52.370 -51.605 1.00 29.46 ATOM 73 C LYS N1301 78.474 52.906 -50.182 1.00 31.95 ATOM 74 O LYS N1301 77.761 52.451 -49.261 1.00 35.64 ATOM 75 CB LYS N1301 77.302 53.138 -52.379 1.00 30.34 ATOM 76 CG LYS N1301 77.602 53.211 -53.882 1.00 33.26 ATOM 77 CD LYS N1301 76.598 54.025 -54.708 1.00 34.22 ATOM 78 CE LYS N1301 76.589 53.573 -56.179 1.00 32.31 ATOM 79 NZ LYS N1301 76.255 54.640 -57.170 1.00 36.18 ATOM 80 N GLY N1302 79.502 53.720 -49.966 1.00 32.02 ATOM 81 CA GLY N1302 79.659 54.394 -48.679 1.00 31.52 ATOM 82 C GLY N1302 80.163 53.492 -47.565 1.00 35.20 ATOM 83 O GLY N1302 80.357 53.970 -46.462 1.00 38.83 ATOM 84 N CYS N1303 80.376 52.205 -47.839 1.00 36.09 ATOM 85 CA CYS N1303 80.967 51.288 -46.914 1.00 33.51 ATOM 86 C CYS N1303 82.466 51.262 -47.202 1.00 37.15 ATOM 87 O CYS N1303 82.892 51.083 -48.349 1.00 34.44 ATOM 88 CB CYS N1303 80.378 49.894 -47.079 1.00 32.49 ATOM 89 SG CYS N1303 81.271 48.640 -46.103 1.00 36.13 ATOM 90 N LYS N1304 83.257 51.463 -46.143 1.00 41.57 ATOM 91 CA LYS N1304 84.711 51.526 -46.284 1.00 41.91 ATOM 92 C LYS N1304 85.389 50.215 -45.917 1.00 42.60 ATOM 93 O LYS N1304 86.612 50.090 -46.061 1.00 41.47 ATOM 94 CB LYS N1304 85.311 52.683 -45.494 1.00 40.54 ATOM 95 CG LYS N1304 84.824 54.054 -45.972 1.00 43.47 ATOM 96 CD LYS N1304 84.678 54.139 -47.498 1.00 38.71 ATOM 97 CE LYS N1304 83.670 55.214 -47.936 1.00 42.20 ATOM 98 NZ LYS N1304 83.573 55.282 -49.433 1.00 36.68 ATOM 99 N MET N1305 84.595 49.241 -45.480 1.00 43.30 ATOM 100 CA MET N1305 85.152 47.975 -45.002 1.00 51.04 ATOM 101 C MET N1305 85.889 47.220 -46.071 1.00 51.02 ATOM 102 O MET N1305 85.465 47.241 -47.221 1.00 63.10 ATOM 103 CB MET N1305 84.083 47.110 -44.386 1.00 55.63 ATOM 104 CG MET N1305 84.676 46.095 -43.423 1.00 59.97 ATOM 105 SD MET N1305 85.044 46.940 -41.831 1.00 66.56 ATOM 106 CE MET N1305 83.515 47.809 -41.416 1.00 68.38 ATOM 107 N THR N1306 87.010 46.600 -45.707 1.00 49.80 ATOM 108 CA THR N1306 87.902 45.953 -46.680 1.00 50.30 ATOM 109 C THR N1306 88.279 44.601 -46.154 1.00 53.54 ATOM 110 O THR N1306 88.216 44.362 -44.940 1.00 47.89 ATOM 111 CB THR N1306 89.197 46.737 -46.894 1.00 54.85 ATOM 112 OG1 THR N1306 89.760 47.017 -45.614 1.00 58.15 ATOM 113 CG2 THR N1306 88.942 48.081 -47.600 1.00 49.20 ATOM 114 N PHE N1307 88.678 43.700 -47.066 1.00 58.99 ATOM 115 CA PHE N1307 89.004 42.313 -46.651 1.00 56.87 ATOM 116 C PHE N1307 90.154 41.746 -47.414 1.00 62.90 ATOM 117 O PHE N1307 90.877 42.453 -48.140 1.00 63.63 ATOM 118 CB PHE N1307 87.781 41.425 -46.801 1.00 48.21 ATOM 119 CG PHE N1307 86.541 42.046 -46.299 1.00 44.94 ATOM 120 CD1 PHE N1307 86.255 42.079 -44.950 1.00 44.48 ATOM 121 CD2 PHE N1307 85.716 42.696 -47.185 1.00 46.52 ATOM 122 CE1 PHE N1307 85.109 42.693 -44.495 1.00 50.14 ATOM 123 CE2 PHE N1307 84.584 43.348 -46.750 1.00 51.09 ATOM 124 CZ PHE N1307 84.242 43.333 -45.388 1.00 51.55 ATOM 125 N LYS N1308 90.389 40.452 -47.194 1.00 69.00 ATOM 126 CA LYS N1308 91.470 39.691 -47.835 1.00 66.46 ATOM 127 C LYS N1308 90.983 38.313 -48.289 1.00 69.24 ATOM 128 O LYS N1308 91.550 37.730 -49.180 1.00 76.59 ATOM 129 CB LYS N1308 92.705 39.533 -46.915 1.00 63.23 ATOM 130 CG LYS N1308 93.158 40.880 -46.309 1.00 53.99 ATOM 131 CD LYS N1308 94.188 40.719 -45.212 1.00 49.70 ATOM 132 CE LYS N1308 95.389 40.048 -45.762 1.00 47.33 ATOM 133 NZ LYS N1308 96.265 40.862 -46.624 1.00 41.24 ATOM 134 N TRP N1309 89.920 37.800 -47.673 1.00 72.04 ATOM 135 CA TRP N1309 89.264 36.578 -48.132 1.00 78.42 ATOM 136 C TRP N1309 87.924 36.852 -48.793 1.00 82.03 ATOM 137 O TRP N1309 87.118 37.596 -48.270 1.00 78.44 ATOM 138 CB TRP N1309 89.051 35.699 -46.920 1.00 84.21 ATOM 139 CG TRP N1309 90.233 34.897 -46.560 1.00 93.29 ATOM 140 CD1 TRP N1309 91.179 35.159 -45.598 1.00 96.21 ATOM 141 CD2 TRP N1309 90.581 33.651 -47.141 1.00101.70 ATOM 142 NE1 TRP N1309 92.100 34.154 -45.570 1.00102.56 ATOM 143 CE2 TRP N1309 91.761 33.211 -46.504 1.00105.37 ATOM 144 CE3 TRP N1309 90.017 32.862 -48.154 1.00100.03 ATOM 145 CZ2 TRP N1309 92.392 32.012 -46.843 1.00104.76 ATOM 146 CZ3 TRP N1309 90.646 31.669 -48.494 1.00 98.32 ATOM 147 CH2 TRP N1309 91.822 31.258 -47.836 1.00 98.51 ATOM 148 N ALA N1310 87.730 36.235 -49.939 1.00 80.36 ATOM 149 CA ALA N1310 86.509 36.431 -50.714 1.00 76.30 ATOM 150 C ALA N1310 85.260 36.068 -49.925 1.00 76.42 ATOM 151 O ALA N1310 84.269 36.810 -49.965 1.00 90.36 ATOM 152 CB ALA N1310 86.564 35.683 -52.039 1.00 69.24 ATOM 153 N TRP N1311 85.252 34.918 -49.260 1.00 67.27 ATOM 154 CA TRP N1311 83.956 34.374 -48.843 1.00 65.42 ATOM 155 C TRP N1311 83.405 35.181 -47.665 1.00 66.50 ATOM 156 O TRP N1311 82.198 35.361 -47.528 1.00 63.92 ATOM 157 CB TRP N1311 84.086 32.889 -48.529 1.00 56.62 ATOM 158 CG TRP N1311 82.920 32.350 -47.824 1.00 54.24 ATOM 159 CD1 TRP N1311 82.776 32.259 -46.471 1.00 53.13 ATOM 160 CD2 TRP N1311 81.691 31.924 -48.390 1.00 58.08 ATOM 161 NE1 TRP N1311 81.551 31.764 -46.167 1.00 61.38 ATOM 162 CE2 TRP N1311 80.868 31.523 -47.326 1.00 57.70 ATOM 163 CE3 TRP N1311 81.209 31.788 -49.690 1.00 61.82 ATOM 164 CZ2 TRP N1311 79.588 30.970 -47.524 1.00 58.31 ATOM 165 CZ3 TRP N1311 79.918 31.267 -49.877 1.00 59.89 ATOM 166 CH2 TRP N1311 79.121 30.885 -48.785 1.00 56.69 ATOM 167 N SER N1312 84.283 35.606 -46.769 1.00 65.52 ATOM 168 CA SER N1312 83.875 36.540 -45.731 1.00 69.23 ATOM 169 C SER N1312 83.120 37.734 -46.334 1.00 68.25 ATOM 170 O SER N1312 82.026 38.071 -45.895 1.00 67.44 ATOM 171 CB SER N1312 85.066 37.014 -44.922 1.00 70.61 ATOM 172 OG SER N1312 85.626 38.194 -45.470 1.00 69.40 ATOM 173 N ARG N1313 83.696 38.347 -47.356 1.00 65.25 ATOM 174 CA ARG N1313 83.072 39.466 -48.051 1.00 58.93 ATOM 175 C ARG N1313 81.726 39.051 -48.668 1.00 53.81 ATOM 176 O ARG N1313 80.719 39.704 -48.446 1.00 57.78 ATOM 177 CB ARG N1313 84.045 40.030 -49.070 1.00 55.59 ATOM 178 CG ARG N1313 83.617 41.317 -49.755 1.00 63.32 ATOM 179 CD ARG N1313 84.455 41.560 -51.000 1.00 62.18 ATOM 180 NE ARG N1313 84.430 40.461 -51.982 1.00 64.33 ATOM 181 CZ ARG N1313 85.059 40.497 -53.154 1.00 62.43 ATOM 182 NH1 ARG N1313 85.782 41.555 -53.524 1.00 57.43 ATOM 183 NH2 ARG N1313 84.963 39.456 -53.974 1.00 63.72 ATOM 184 N THR N1314 81.709 38.009 -49.473 1.00 41.06 ATOM 185 CA THR N1314 80.458 37.463 -49.990 1.00 38.27 ATOM 186 C THR N1314 79.328 37.446 -48.936 1.00 38.50 ATOM 187 O THR N1314 78.197 37.869 -49.199 1.00 40.67 ATOM 188 CB THR N1314 80.655 36.066 -50.551 1.00 33.74 ATOM 189 OG1 THR N1314 81.566 36.152 -51.622 1.00 34.92 ATOM 190 CG2 THR N1314 79.341 35.464 -51.079 1.00 32.32 ATOM 191 N GLU N1315 79.640 36.960 -47.749 1.00 38.31 ATOM 192 CA GLU N1315 78.618 36.844 -46.736 1.00 35.20 ATOM 193 C GLU N1315 78.319 38.206 -46.097 1.00 33.46 ATOM 194 CB GLU N1315 79.010 35.808 -45.706 1.00 38.77 ATOM 195 CG GLU N1315 78.804 34.385 -46.198 1.00 40.61 ATOM 196 CD GLU N1315 78.808 33.347 -45.059 1.00 40.75 ATOM 197 OE1 GLU N1315 79.601 33.478 -44.097 1.00 36.64 ATOM 198 OE2 GLU N1315 77.999 32.373 -45.170 1.00 37.69 ATOM 199 N HIS N1316 79.373 39.012 -45.919 1.00 29.69 ATOM 200 CA HIS N1316 79.231 40.372 -45.458 1.00 30.26 ATOM 201 C HIS N1316 78.152 41.092 -46.255 1.00 34.82 ATOM 202 O HIS N1316 77.351 41.849 -45.713 1.00 40.51 ATOM 203 CB HIS N1316 80.554 41.125 -45.578 1.00 26.00 ATOM 204 CG HIS N1316 80.400 42.598 -45.777 1.00 23.11 ATOM 205 ND1 HIS N1316 80.521 43.464 -44.739 1.00 23.31 ATOM 206 CD2 HIS N1316 80.057 43.348 -46.866 1.00 23.27 ATOM 207 CE1 HIS N1316 80.328 44.698 -45.185 1.00 24.82 ATOM 208 NE2 HIS N1316 80.037 44.644 -46.471 1.00 21.82 ATOM 209 N ILE N1317 78.159 40.897 -47.569 1.00 39.04 ATOM 210 CA ILE N1317 77.266 41.613 -48.447 1.00 38.93 ATOM 211 C ILE N1317 75.806 41.424 -48.009 1.00 42.69 ATOM 212 O ILE N1317 75.066 42.407 -47.933 1.00 41.40 ATOM 213 CB ILE N1317 77.520 41.162 -49.908 1.00 38.42 ATOM 214 CG1 ILE N1317 78.862 41.693 -50.394 1.00 37.53 ATOM 215 CG2 ILE N1317 76.364 41.532 -50.851 1.00 37.89 ATOM 216 CD1 ILE N1317 79.353 41.030 -51.664 1.00 40.45 ATOM 217 N ARG N1318 75.423 40.202 -47.633 1.00 42.23 ATOM 218 CA ARG N1318 74.035 39.991 -47.248 1.00 42.77 ATOM 219 C ARG N1318 73.635 40.698 -45.949 1.00 41.43 ATOM 220 O ARG N1318 72.459 40.683 -45.603 1.00 45.54 ATOM 221 CB ARG N1318 73.716 38.518 -47.083 1.00 42.20 ATOM 222 CG ARG N1318 74.483 37.567 -47.950 1.00 39.04 ATOM 223 CD ARG N1318 73.905 36.179 -47.704 1.00 43.25 ATOM 224 NE ARG N1318 74.530 35.155 -48.524 1.00 43.20 ATOM 225 CZ ARG N1318 75.422 34.260 -48.080 1.00 40.67 ATOM 226 NH1 ARG N1318 75.776 34.240 -46.836 1.00 39.15 ATOM 227 NH2 ARG N1318 75.894 33.342 -48.893 1.00 38.95 ATOM 228 N VAL N1319 74.580 41.307 -45.238 1.00 38.37 ATOM 229 CA VAL N1319 74.194 42.156 -44.130 1.00 39.24 ATOM 230 C VAL N1319 73.589 43.450 -44.671 1.00 43.71 ATOM 231 O VAL N1319 72.677 44.015 -44.073 1.00 47.65 ATOM 232 CB VAL N1319 75.390 42.459 -43.201 1.00 35.96 ATOM 233 CG1 VAL N1319 75.205 43.735 -42.398 1.00 37.35 ATOM 234 CG2 VAL N1319 75.719 41.240 -42.371 1.00 36.58 ATOM 235 N HIS N1320 74.114 43.926 -45.807 1.00 43.48 ATOM 236 CA HIS N1320 73.509 45.068 -46.485 1.00 41.97 ATOM 237 C HIS N1320 72.226 44.622 -47.210 1.00 37.82 ATOM 238 O HIS N1320 71.231 45.333 -47.210 1.00 36.68 ATOM 239 CB HIS N1320 74.460 45.674 -47.487 1.00 49.85 ATOM 240 CG HIS N1320 75.790 46.081 -46.929 1.00 48.84 ATOM 241 ND1 HIS N1320 75.983 47.264 -46.253 1.00 49.88 ATOM 242 CD2 HIS N1320 77.008 45.495 -46.981 1.00 52.19 ATOM 243 CE1 HIS N1320 77.244 47.399 -45.922 1.00 50.30 ATOM 244 NE2 HIS N1320 77.876 46.335 -46.347 1.00 57.70 ATOM 245 N THR N1321 72.240 43.462 -47.842 1.00 31.27 ATOM 246 CA THR N1321 71.087 43.017 -48.577 1.00 31.84 ATOM 247 C THR N1321 69.973 42.412 -47.757 1.00 30.87 ATOM 248 O THR N1321 68.893 42.184 -48.283 1.00 28.59 ATOM 249 CB THR N1321 71.478 42.013 -49.670 1.00 36.02 ATOM 250 OG1 THR N1321 71.645 40.718 -49.076 1.00 44.04 ATOM 251 CG2 THR N1321 72.778 42.418 -50.348 1.00 39.71 ATOM 252 N GLY N1322 70.217 42.110 -46.486 1.00 29.69 ATOM 253 CA GLY N1322 69.229 41.430 -45.642 1.00 27.80 ATOM 254 C GLY N1322 68.759 40.064 -46.147 1.00 26.69 ATOM 255 O GLY N1322 67.878 39.455 -45.576 1.00 23.11 ATOM 256 ZN ZN N1401 80.120 46.681 -46.678 1.00 30.43 TER