HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNN TITLE REF6 ZnF2-4-NAC004-mC1 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B, N, G; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.60 ANGSTORMS DBREF 6JNN N 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 N 31 ALA ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN SEQRES 2 N 31 THR PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG SEQRES 3 N 31 LYS THR GLY HIS SER ATOM 1 N ALA N1323 69.340 39.586 -47.230 1.00 25.05 ATOM 2 CA ALA N1323 68.949 38.316 -47.820 1.00 27.89 ATOM 3 C ALA N1323 69.236 37.188 -46.833 1.00 30.33 ATOM 4 O ALA N1323 70.182 37.249 -46.022 1.00 31.02 ATOM 5 CB ALA N1323 69.681 38.076 -49.137 1.00 24.87 ATOM 6 N ARG N1324 68.375 36.173 -46.885 1.00 30.12 ATOM 7 CA ARG N1324 68.457 35.004 -46.029 1.00 27.79 ATOM 8 C ARG N1324 68.354 33.772 -46.926 1.00 28.83 ATOM 9 O ARG N1324 67.323 33.100 -46.955 1.00 28.95 ATOM 10 CB ARG N1324 67.382 35.022 -44.962 1.00 27.06 ATOM 11 CG ARG N1324 67.666 36.030 -43.852 1.00 29.18 ATOM 12 CD ARG N1324 66.962 35.701 -42.544 1.00 29.67 ATOM 13 NE ARG N1324 67.882 36.097 -41.467 1.00 31.29 ATOM 14 CZ ARG N1324 67.969 35.451 -40.306 1.00 31.52 ATOM 15 NH1 ARG N1324 68.809 35.858 -39.361 1.00 29.61 ATOM 16 NH2 ARG N1324 67.206 34.382 -40.091 1.00 32.98 ATOM 17 N PRO N1325 69.440 33.461 -47.642 1.00 29.45 ATOM 18 CA PRO N1325 69.303 32.529 -48.774 1.00 33.30 ATOM 19 C PRO N1325 69.003 31.089 -48.413 1.00 40.04 ATOM 20 O PRO N1325 68.240 30.443 -49.142 1.00 47.83 ATOM 21 CB PRO N1325 70.638 32.664 -49.526 1.00 29.56 ATOM 22 CG PRO N1325 71.584 33.204 -48.486 1.00 30.04 ATOM 23 CD PRO N1325 70.781 34.070 -47.562 1.00 28.37 ATOM 24 N TYR N1326 69.556 30.569 -47.327 1.00 46.41 ATOM 25 CA TYR N1326 69.456 29.104 -47.097 1.00 49.08 ATOM 26 C TYR N1326 68.102 28.804 -46.460 1.00 47.60 ATOM 27 O TYR N1326 67.823 29.234 -45.335 1.00 39.15 ATOM 28 CB TYR N1326 70.595 28.578 -46.241 1.00 49.53 ATOM 29 CG TYR N1326 71.933 29.146 -46.628 1.00 51.10 ATOM 30 CD1 TYR N1326 72.386 30.359 -46.065 1.00 54.52 ATOM 31 CD2 TYR N1326 72.735 28.499 -47.570 1.00 51.48 ATOM 32 CE1 TYR N1326 73.622 30.873 -46.401 1.00 55.03 ATOM 33 CE2 TYR N1326 73.976 29.018 -47.913 1.00 53.30 ATOM 34 CZ TYR N1326 74.414 30.200 -47.316 1.00 54.09 ATOM 35 OH TYR N1326 75.635 30.745 -47.646 1.00 66.93 ATOM 36 N VAL N1327 67.265 28.087 -47.214 1.00 49.70 ATOM 37 CA VAL N1327 65.914 27.718 -46.813 1.00 56.19 ATOM 38 C VAL N1327 65.826 26.193 -46.750 1.00 59.69 ATOM 39 O VAL N1327 66.124 25.497 -47.738 1.00 60.83 ATOM 40 CB VAL N1327 64.869 28.266 -47.843 1.00 62.57 ATOM 41 CG1 VAL N1327 63.533 27.521 -47.755 1.00 62.65 ATOM 42 CG2 VAL N1327 64.641 29.761 -47.701 1.00 58.58 ATOM 43 N CYS N1328 65.369 25.682 -45.604 1.00 66.71 ATOM 44 CA CYS N1328 65.280 24.239 -45.453 1.00 70.49 ATOM 45 C CYS N1328 64.223 23.630 -46.373 1.00 71.53 ATOM 46 O CYS N1328 63.119 24.120 -46.487 1.00 68.40 ATOM 47 CB CYS N1328 65.035 23.801 -44.026 1.00 76.33 ATOM 48 SG CYS N1328 65.306 21.997 -43.905 1.00 86.86 ATOM 49 N ALA N1329 64.599 22.503 -46.962 1.00 76.66 ATOM 50 CA ALA N1329 63.758 21.719 -47.864 1.00 80.21 ATOM 51 C ALA N1329 62.706 20.839 -47.155 1.00 87.50 ATOM 52 O ALA N1329 61.936 20.146 -47.833 1.00 92.29 ATOM 53 CB ALA N1329 64.659 20.859 -48.743 1.00 77.92 ATOM 54 N GLU N1330 62.674 20.891 -45.822 1.00 93.88 ATOM 55 CA GLU N1330 61.765 20.105 -45.039 1.00 89.36 ATOM 56 C GLU N1330 60.322 20.631 -45.110 1.00 84.63 ATOM 57 O GLU N1330 60.102 21.798 -44.828 1.00 79.26 ATOM 58 CB GLU N1330 62.240 19.974 -43.580 1.00 91.07 ATOM 59 CG GLU N1330 61.344 19.123 -42.678 1.00 89.94 ATOM 60 CD GLU N1330 61.390 17.646 -42.979 1.00 92.42 ATOM 61 OE1 GLU N1330 62.070 17.244 -43.953 1.00 97.30 ATOM 62 OE2 GLU N1330 60.704 16.888 -42.262 1.00 89.92 ATOM 63 N PRO N1331 59.350 19.727 -45.383 1.00 81.98 ATOM 64 CA PRO N1331 57.938 20.068 -45.194 1.00 84.19 ATOM 65 C PRO N1331 57.609 20.474 -43.761 1.00 85.82 ATOM 66 O PRO N1331 58.121 19.894 -42.808 1.00 93.80 ATOM 67 CB PRO N1331 57.199 18.769 -45.553 1.00 83.63 ATOM 68 CG PRO N1331 58.180 17.912 -46.286 1.00 82.26 ATOM 69 CD PRO N1331 59.563 18.501 -46.192 1.00 83.55 ATOM 70 N ASP N1332 56.778 21.512 -43.616 1.00 86.47 ATOM 71 CA ASP N1332 56.430 22.104 -42.320 1.00 87.85 ATOM 72 C ASP N1332 57.633 22.532 -41.470 1.00 89.26 ATOM 73 O ASP N1332 57.563 22.508 -40.257 1.00 91.89 ATOM 74 CB ASP N1332 55.508 21.144 -41.547 1.00 92.07 ATOM 75 CG ASP N1332 54.103 21.091 -42.135 1.00 99.04 ATOM 76 OD1 ASP N1332 53.934 21.132 -43.367 1.00 98.88 ATOM 77 OD2 ASP N1332 53.134 21.051 -41.341 1.00109.25 ATOM 78 N CYS N1333 58.757 22.806 -42.126 1.00 92.08 ATOM 79 CA CYS N1333 59.875 23.438 -41.469 1.00 87.69 ATOM 80 C CYS N1333 60.051 24.821 -42.076 1.00 82.81 ATOM 81 O CYS N1333 59.440 25.775 -41.562 1.00 89.00 ATOM 82 CB CYS N1333 61.143 22.596 -41.561 1.00 80.94 ATOM 83 SG CYS N1333 62.501 23.386 -40.668 1.00 92.09 ATOM 84 N GLY N1334 60.838 24.950 -43.149 1.00 78.16 ATOM 85 CA GLY N1334 60.974 26.226 -43.845 1.00 70.07 ATOM 86 C GLY N1334 61.453 27.422 -43.035 1.00 69.83 ATOM 87 O GLY N1334 60.801 28.479 -43.014 1.00 71.97 ATOM 88 N GLN N1335 62.498 27.207 -42.246 1.00 60.64 ATOM 89 CA GLN N1335 63.195 28.335 -41.643 1.00 53.32 ATOM 90 C GLN N1335 64.234 28.830 -42.642 1.00 54.47 ATOM 91 O GLN N1335 64.609 28.128 -43.613 1.00 54.43 ATOM 92 CB GLN N1335 63.898 27.950 -40.346 1.00 51.45 ATOM 93 CG GLN N1335 62.986 27.587 -39.212 1.00 54.03 ATOM 94 CD GLN N1335 63.557 26.437 -38.414 1.00 57.08 ATOM 95 OE1 GLN N1335 64.328 26.619 -37.452 1.00 55.10 ATOM 96 NE2 GLN N1335 63.170 25.251 -38.801 1.00 52.31 ATOM 97 N THR N1336 64.734 30.038 -42.383 1.00 56.55 ATOM 98 CA THR N1336 65.801 30.604 -43.194 1.00 55.50 ATOM 99 C THR N1336 66.911 31.064 -42.263 1.00 55.34 ATOM 100 O THR N1336 66.690 31.362 -41.078 1.00 53.97 ATOM 101 CB THR N1336 65.282 31.816 -43.996 1.00 57.39 ATOM 102 OG1 THR N1336 65.111 32.966 -43.120 1.00 57.15 ATOM 103 CG2 THR N1336 63.997 31.498 -44.736 1.00 59.25 ATOM 104 N PHE N1337 68.110 31.153 -42.833 1.00 53.99 ATOM 105 CA PHE N1337 69.293 31.586 -42.073 1.00 57.02 ATOM 106 C PHE N1337 70.171 32.364 -43.022 1.00 53.42 ATOM 107 O PHE N1337 70.301 32.007 -44.213 1.00 55.78 ATOM 108 CB PHE N1337 70.056 30.394 -41.465 1.00 58.05 ATOM 109 CG PHE N1337 69.156 29.322 -40.908 1.00 60.11 ATOM 110 CD1 PHE N1337 68.656 29.390 -39.611 1.00 58.66 ATOM 111 CD2 PHE N1337 68.730 28.286 -41.739 1.00 54.94 ATOM 112 CE1 PHE N1337 67.762 28.429 -39.160 1.00 57.48 ATOM 113 CE2 PHE N1337 67.850 27.331 -41.289 1.00 57.89 ATOM 114 CZ PHE N1337 67.366 27.397 -39.992 1.00 55.83 ATOM 115 N ARG N1338 70.830 33.400 -42.505 1.00 48.94 ATOM 116 CA ARG N1338 71.585 34.312 -43.352 1.00 44.29 ATOM 117 C ARG N1338 72.856 33.663 -43.880 1.00 49.14 ATOM 118 O ARG N1338 73.148 33.732 -45.044 1.00 48.81 ATOM 119 CB ARG N1338 71.864 35.622 -42.625 1.00 43.50 ATOM 120 CG ARG N1338 72.655 36.656 -43.401 1.00 40.82 ATOM 121 CD ARG N1338 72.380 38.041 -42.907 1.00 42.90 ATOM 122 NE ARG N1338 70.984 38.421 -43.148 1.00 42.89 ATOM 123 CZ ARG N1338 70.333 39.323 -42.431 1.00 39.55 ATOM 124 NH1 ARG N1338 69.070 39.604 -42.735 1.00 45.48 ATOM 125 NH2 ARG N1338 70.958 39.999 -41.466 1.00 32.62 ATOM 126 N PHE N1339 73.547 32.952 -43.000 1.00 55.14 ATOM 127 CA PHE N1339 74.858 32.375 -43.297 1.00 53.93 ATOM 128 C PHE N1339 74.767 30.848 -43.301 1.00 57.50 ATOM 129 O PHE N1339 73.831 30.243 -42.726 1.00 59.07 ATOM 130 CB PHE N1339 75.873 32.859 -42.299 1.00 47.01 ATOM 131 CG PHE N1339 75.750 34.319 -41.974 1.00 47.12 ATOM 132 CD1 PHE N1339 74.901 34.762 -40.940 1.00 47.27 ATOM 133 CD2 PHE N1339 76.479 35.252 -42.677 1.00 48.36 ATOM 134 CE1 PHE N1339 74.820 36.105 -40.627 1.00 48.52 ATOM 135 CE2 PHE N1339 76.422 36.608 -42.357 1.00 51.62 ATOM 136 CZ PHE N1339 75.573 37.031 -41.338 1.00 52.06 ATOM 137 N VAL N1340 75.689 30.224 -44.022 1.00 56.58 ATOM 138 CA VAL N1340 75.703 28.773 -44.184 1.00 54.24 ATOM 139 C VAL N1340 75.870 28.047 -42.851 1.00 52.89 ATOM 140 O VAL N1340 75.235 27.040 -42.587 1.00 52.44 ATOM 141 CB VAL N1340 76.775 28.309 -45.216 1.00 53.96 ATOM 142 CG1 VAL N1340 78.239 28.824 -45.010 1.00 46.13 ATOM 143 CG2 VAL N1340 76.736 26.799 -45.463 1.00 57.29 ATOM 144 N SER N1341 76.763 28.585 -42.037 1.00 51.00 ATOM 145 CA SER N1341 77.049 28.040 -40.713 1.00 44.89 ATOM 146 C SER N1341 75.752 27.740 -39.970 1.00 42.30 ATOM 147 O SER N1341 75.538 26.646 -39.481 1.00 42.05 ATOM 148 CB SER N1341 77.926 29.017 -39.905 1.00 39.83 ATOM 149 OG SER N1341 78.720 28.310 -38.974 1.00 33.63 ATOM 150 N ASP N1342 74.872 28.731 -39.916 1.00 42.68 ATOM 151 CA ASP N1342 73.622 28.615 -39.192 1.00 40.64 ATOM 152 C ASP N1342 72.766 27.498 -39.778 1.00 42.81 ATOM 153 O ASP N1342 72.159 26.738 -39.035 1.00 46.60 ATOM 154 CB ASP N1342 72.912 29.964 -39.193 1.00 37.39 ATOM 155 CG ASP N1342 73.792 31.080 -38.577 1.00 39.44 ATOM 156 OD1 ASP N1342 74.788 30.763 -37.873 1.00 39.39 ATOM 157 OD2 ASP N1342 73.530 32.273 -38.818 1.00 37.98 ATOM 158 N PHE N1343 72.751 27.358 -41.102 1.00 46.45 ATOM 159 CA PHE N1343 72.015 26.260 -41.729 1.00 49.40 ATOM 160 C PHE N1343 72.573 24.875 -41.397 1.00 53.58 ATOM 161 O PHE N1343 71.802 23.932 -41.236 1.00 59.11 ATOM 162 CB PHE N1343 71.956 26.450 -43.266 1.00 51.73 ATOM 163 CG PHE N1343 71.106 25.427 -43.994 1.00 54.40 ATOM 164 CD1 PHE N1343 69.841 25.087 -43.513 1.00 57.48 ATOM 165 CD2 PHE N1343 71.610 24.711 -45.084 1.00 58.66 ATOM 166 CE1 PHE N1343 69.051 24.118 -44.160 1.00 57.81 ATOM 167 CE2 PHE N1343 70.837 23.735 -45.731 1.00 62.82 ATOM 168 CZ PHE N1343 69.558 23.439 -45.259 1.00 58.91 ATOM 169 N SER N1344 73.891 24.746 -41.280 1.00 58.36 ATOM 170 CA SER N1344 74.440 23.421 -40.928 1.00 54.13 ATOM 171 C SER N1344 74.266 23.087 -39.448 1.00 50.07 ATOM 172 O SER N1344 74.015 21.954 -39.060 1.00 46.63 ATOM 173 CB SER N1344 75.898 23.344 -41.340 1.00 58.89 ATOM 174 OG SER N1344 75.993 23.366 -42.755 1.00 59.19 ATOM 175 N ARG N1345 74.414 24.096 -38.599 1.00 43.49 ATOM 176 CA ARG N1345 74.006 24.029 -37.193 1.00 40.39 ATOM 177 C ARG N1345 72.591 23.466 -37.062 1.00 42.68 ATOM 178 O ARG N1345 72.370 22.411 -36.458 1.00 45.84 ATOM 179 CB ARG N1345 74.062 25.442 -36.614 1.00 35.62 ATOM 180 CG ARG N1345 74.105 25.549 -35.115 1.00 31.65 ATOM 181 CD ARG N1345 74.085 27.067 -34.771 1.00 26.59 ATOM 182 NE ARG N1345 73.294 27.606 -33.669 1.00 26.78 ATOM 183 CZ ARG N1345 71.988 27.387 -33.415 1.00 27.15 ATOM 184 NH1 ARG N1345 71.297 26.502 -34.175 1.00 26.65 ATOM 185 NH2 ARG N1345 71.415 28.001 -32.358 1.00 21.60 ATOM 186 N HIS N1346 71.629 24.177 -37.654 1.00 48.61 ATOM 187 CA HIS N1346 70.251 23.686 -37.750 1.00 46.16 ATOM 188 C HIS N1346 70.146 22.225 -38.287 1.00 47.28 ATOM 189 O HIS N1346 69.527 21.390 -37.691 1.00 48.38 ATOM 190 CB HIS N1346 69.424 24.618 -38.645 1.00 41.37 ATOM 191 CG HIS N1346 68.035 24.120 -38.900 1.00 37.16 ATOM 192 ND1 HIS N1346 67.723 23.254 -39.929 1.00 33.58 ATOM 193 CD2 HIS N1346 66.866 24.432 -38.291 1.00 32.82 ATOM 194 CE1 HIS N1346 66.428 23.017 -39.907 1.00 34.03 ATOM 195 NE2 HIS N1346 65.889 23.705 -38.916 1.00 31.62 ATOM 196 N LYS N1347 70.747 21.964 -39.417 1.00 48.32 ATOM 197 CA LYS N1347 70.644 20.695 -40.126 1.00 47.86 ATOM 198 C LYS N1347 71.056 19.514 -39.241 1.00 47.84 ATOM 199 O LYS N1347 70.408 18.482 -39.243 1.00 42.03 ATOM 200 CB LYS N1347 71.529 20.744 -41.386 1.00 46.05 ATOM 201 CG LYS N1347 71.562 19.463 -42.201 1.00 46.32 ATOM 202 CD LYS N1347 71.550 19.822 -43.702 1.00 42.98 ATOM 203 CE LYS N1347 72.307 18.838 -44.592 1.00 44.97 ATOM 204 NZ LYS N1347 71.806 18.805 -45.996 1.00 50.19 ATOM 205 N ARG N1348 72.161 19.667 -38.520 1.00 48.97 ATOM 206 CA ARG N1348 72.569 18.625 -37.592 1.00 50.07 ATOM 207 C ARG N1348 71.588 18.560 -36.450 1.00 51.93 ATOM 208 O ARG N1348 71.251 17.463 -35.965 1.00 56.89 ATOM 209 CB ARG N1348 73.969 18.832 -37.049 1.00 47.87 ATOM 210 CG ARG N1348 74.961 19.272 -38.094 1.00 52.09 ATOM 211 CD ARG N1348 76.180 19.892 -37.533 1.00 43.84 ATOM 212 NE ARG N1348 75.830 20.946 -36.612 1.00 42.39 ATOM 213 CZ ARG N1348 76.080 20.919 -35.305 1.00 45.79 ATOM 214 NH1 ARG N1348 75.720 21.941 -34.534 1.00 47.15 ATOM 215 NH2 ARG N1348 76.708 19.866 -34.760 1.00 41.74 ATOM 216 N LYS N1349 71.147 19.716 -35.972 1.00 52.09 ATOM 217 CA LYS N1349 70.148 19.759 -34.872 1.00 47.14 ATOM 218 C LYS N1349 68.785 19.168 -35.272 1.00 46.34 ATOM 219 O LYS N1349 67.932 19.015 -34.424 1.00 43.46 ATOM 220 CB LYS N1349 69.965 21.187 -34.353 1.00 44.61 ATOM 221 CG LYS N1349 71.178 21.821 -33.705 1.00 50.34 ATOM 222 CD LYS N1349 71.720 21.155 -32.453 1.00 56.52 ATOM 223 CE LYS N1349 73.188 21.500 -32.198 1.00 58.98 ATOM 224 NZ LYS N1349 73.532 22.896 -31.794 1.00 64.02 ATOM 225 N THR N1350 68.572 18.856 -36.557 1.00 44.48 ATOM 226 CA THR N1350 67.230 18.548 -37.061 1.00 42.64 ATOM 227 C THR N1350 67.146 17.273 -37.938 1.00 46.55 ATOM 228 O THR N1350 66.112 16.582 -37.932 1.00 46.99 ATOM 229 CB THR N1350 66.699 19.748 -37.863 1.00 39.78 ATOM 230 OG1 THR N1350 67.572 19.993 -38.964 1.00 34.11 ATOM 231 CG2 THR N1350 66.522 20.982 -37.004 1.00 42.91 ATOM 232 N GLY N1351 68.203 16.966 -38.699 1.00 50.99 ATOM 233 CA GLY N1351 68.224 15.831 -39.602 1.00 51.69 ATOM 234 C GLY N1351 67.596 16.061 -40.976 1.00 55.85 ATOM 235 O GLY N1351 67.413 15.141 -41.757 1.00 46.67 ATOM 236 N HIS N1352 67.305 17.316 -41.292 1.00 66.78 ATOM 237 CA HIS N1352 66.716 17.744 -42.541 1.00 71.27 ATOM 238 C HIS N1352 67.767 17.862 -43.631 1.00 74.80 ATOM 239 O HIS N1352 68.903 18.275 -43.369 1.00 72.67 ATOM 240 CB HIS N1352 66.072 19.126 -42.347 1.00 70.46 ATOM 241 CG HIS N1352 64.920 19.130 -41.384 1.00 73.69 ATOM 242 ND1 HIS N1352 64.245 20.284 -41.041 1.00 78.41 ATOM 243 CD2 HIS N1352 64.358 18.134 -40.653 1.00 75.33 ATOM 244 CE1 HIS N1352 63.300 19.986 -40.168 1.00 76.40 ATOM 245 NE2 HIS N1352 63.348 18.692 -39.918 1.00 78.43 ATOM 246 N SER N1353 67.362 17.537 -44.871 1.00 71.25 ATOM 247 CA SER N1353 68.198 17.716 -46.081 1.00 66.83 ATOM 248 C SER N1353 69.416 16.796 -46.022 1.00 62.13 ATOM 249 O SER N1353 70.426 16.985 -46.684 1.00 61.78 ATOM 250 CB SER N1353 68.580 19.200 -46.311 1.00 70.43 ATOM 251 OG SER N1353 67.423 20.028 -46.120 1.00 78.42 ATOM 252 ZN ZN N1402 64.416 22.326 -41.335 1.00 70.00 TER