HEADER TRANSCRIPTION (DNA to RNA) 31-DEC-69 6LDI TITLE The cryo-EM structure of E. coli CueR transcription activation COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 6LDI F 1 613 UNP P00579 RPOD_ECOLI 1 613 SEQRES 1 F 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 F 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 F 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG F 448 225.866 205.977 172.563 1.00 41.80 ATOM 2 CA ARG F 448 225.322 204.632 172.482 1.00 41.80 ATOM 3 C ARG F 448 225.887 203.823 173.636 1.00 41.80 ATOM 4 O ARG F 448 227.079 203.917 173.935 1.00 41.80 ATOM 5 CB ARG F 448 225.671 203.967 171.148 1.00 41.80 ATOM 6 CG ARG F 448 224.840 204.446 169.973 1.00 41.80 ATOM 7 CD ARG F 448 223.419 203.963 170.100 1.00 41.80 ATOM 8 NE ARG F 448 223.371 202.518 170.275 1.00 41.80 ATOM 9 CZ ARG F 448 223.114 201.660 169.298 1.00 41.80 ATOM 10 NH1 ARG F 448 222.870 202.104 168.076 1.00 41.80 ATOM 11 NH2 ARG F 448 223.094 200.360 169.547 1.00 41.80 ATOM 12 N THR F 449 225.031 203.038 174.289 1.00 39.51 ATOM 13 CA THR F 449 225.495 202.233 175.414 1.00 39.51 ATOM 14 C THR F 449 226.343 201.066 174.930 1.00 39.51 ATOM 15 O THR F 449 227.523 200.953 175.278 1.00 39.51 ATOM 16 CB THR F 449 224.309 201.730 176.230 1.00 39.51 ATOM 17 OG1 THR F 449 223.439 202.826 176.529 1.00 39.51 ATOM 18 CG2 THR F 449 224.797 201.121 177.524 1.00 39.51 ATOM 19 N ILE F 450 225.759 200.187 174.123 1.00 41.07 ATOM 20 CA ILE F 450 226.530 199.181 173.404 1.00 41.07 ATOM 21 C ILE F 450 227.076 199.863 172.157 1.00 41.07 ATOM 22 O ILE F 450 226.327 200.158 171.224 1.00 41.07 ATOM 23 CB ILE F 450 225.684 197.954 173.047 1.00 41.07 ATOM 24 CG1 ILE F 450 225.215 197.217 174.300 1.00 41.07 ATOM 25 CG2 ILE F 450 226.477 196.998 172.199 1.00 41.07 ATOM 26 CD1 ILE F 450 223.816 197.554 174.745 1.00 41.07 ATOM 27 N ARG F 451 228.378 200.132 172.144 1.00 42.45 ATOM 28 CA ARG F 451 228.962 201.022 171.149 1.00 42.45 ATOM 29 C ARG F 451 229.058 200.327 169.800 1.00 42.45 ATOM 30 O ARG F 451 229.683 199.270 169.681 1.00 42.45 ATOM 31 CB ARG F 451 230.340 201.490 171.599 1.00 42.45 ATOM 32 CG ARG F 451 231.075 202.281 170.548 1.00 42.45 ATOM 33 CD ARG F 451 232.457 202.647 171.029 1.00 42.45 ATOM 34 NE ARG F 451 233.301 203.122 169.942 1.00 42.45 ATOM 35 CZ ARG F 451 234.101 202.341 169.230 1.00 42.45 ATOM 36 NH1 ARG F 451 234.166 201.045 169.490 1.00 42.45 ATOM 37 NH2 ARG F 451 234.836 202.855 168.257 1.00 42.45 ATOM 38 N ILE F 452 228.446 200.929 168.787 1.00 44.82 ATOM 39 CA ILE F 452 228.472 200.422 167.419 1.00 44.82 ATOM 40 C ILE F 452 229.647 201.076 166.705 1.00 44.82 ATOM 41 O ILE F 452 229.907 202.266 166.927 1.00 44.82 ATOM 42 CB ILE F 452 227.146 200.717 166.702 1.00 44.82 ATOM 43 CG1 ILE F 452 225.968 200.342 167.592 1.00 44.82 ATOM 44 CG2 ILE F 452 227.048 199.963 165.405 1.00 44.82 ATOM 45 CD1 ILE F 452 225.864 198.875 167.870 1.00 44.82 ATOM 46 N PRO F 453 230.396 200.356 165.872 1.00 48.75 ATOM 47 CA PRO F 453 231.449 200.999 165.079 1.00 48.75 ATOM 48 C PRO F 453 230.872 201.940 164.033 1.00 48.75 ATOM 49 O PRO F 453 229.672 201.956 163.756 1.00 48.75 ATOM 50 CB PRO F 453 232.172 199.822 164.429 1.00 48.75 ATOM 51 CG PRO F 453 231.901 198.685 165.322 1.00 48.75 ATOM 52 CD PRO F 453 230.526 198.892 165.856 1.00 48.75 ATOM 53 N VAL F 454 231.766 202.729 163.436 1.00 48.95 ATOM 54 CA VAL F 454 231.340 203.830 162.577 1.00 48.95 ATOM 55 C VAL F 454 230.819 203.313 161.243 1.00 48.95 ATOM 56 O VAL F 454 229.838 203.833 160.703 1.00 48.95 ATOM 57 CB VAL F 454 232.496 204.822 162.386 1.00 48.95 ATOM 58 CG1 VAL F 454 232.004 206.097 161.738 1.00 48.95 ATOM 59 CG2 VAL F 454 233.154 205.114 163.714 1.00 48.95 ATOM 60 N HIS F 455 231.450 202.274 160.696 1.00 57.34 ATOM 61 CA HIS F 455 231.036 201.774 159.392 1.00 57.34 ATOM 62 C HIS F 455 229.741 200.982 159.446 1.00 57.34 ATOM 63 O HIS F 455 229.119 200.778 158.401 1.00 57.34 ATOM 64 CB HIS F 455 232.135 200.916 158.774 1.00 57.34 ATOM 65 CG HIS F 455 233.333 201.696 158.335 1.00 57.34 ATOM 66 ND1 HIS F 455 233.331 202.491 157.210 1.00 57.34 ATOM 67 CD2 HIS F 455 234.574 201.800 158.866 1.00 57.34 ATOM 68 CE1 HIS F 455 234.517 203.054 157.068 1.00 57.34 ATOM 69 NE2 HIS F 455 235.290 202.651 158.060 1.00 57.34 ATOM 70 N MET F 456 229.318 200.529 160.623 1.00 59.25 ATOM 71 CA MET F 456 228.044 199.832 160.725 1.00 59.25 ATOM 72 C MET F 456 226.866 200.793 160.764 1.00 59.25 ATOM 73 O MET F 456 225.750 200.406 160.396 1.00 59.25 ATOM 74 CB MET F 456 228.032 198.939 161.964 1.00 59.25 ATOM 75 CG MET F 456 227.079 197.769 161.886 1.00 59.25 ATOM 76 SD MET F 456 227.414 196.709 160.472 1.00 59.25 ATOM 77 CE MET F 456 229.123 196.262 160.762 1.00 59.25 ATOM 78 N ILE F 457 227.097 202.037 161.191 1.00 59.28 ATOM 79 CA ILE F 457 226.042 203.043 161.210 1.00 59.28 ATOM 80 C ILE F 457 225.595 203.381 159.795 1.00 59.28 ATOM 81 O ILE F 457 224.408 203.622 159.556 1.00 59.28 ATOM 82 CB ILE F 457 226.526 204.285 161.977 1.00 59.28 ATOM 83 CG1 ILE F 457 226.972 203.892 163.379 1.00 59.28 ATOM 84 CG2 ILE F 457 225.437 205.329 162.089 1.00 59.28 ATOM 85 CD1 ILE F 457 225.868 203.330 164.224 1.00 59.28 ATOM 86 N GLU F 458 226.513 203.347 158.827 1.00 65.95 ATOM 87 CA GLU F 458 226.129 203.584 157.439 1.00 65.95 ATOM 88 C GLU F 458 225.289 202.439 156.892 1.00 65.95 ATOM 89 O GLU F 458 224.335 202.667 156.137 1.00 65.95 ATOM 90 CB GLU F 458 227.372 203.789 156.577 1.00 65.95 ATOM 91 CG GLU F 458 228.491 204.544 157.261 1.00 65.95 ATOM 92 CD GLU F 458 228.095 205.950 157.643 1.00 65.95 ATOM 93 OE1 GLU F 458 227.378 206.602 156.857 1.00 65.95 ATOM 94 OE2 GLU F 458 228.502 206.406 158.731 1.00 65.95 ATOM 95 N THR F 459 225.614 201.205 157.280 1.00 64.92 ATOM 96 CA THR F 459 224.836 200.055 156.837 1.00 64.92 ATOM 97 C THR F 459 223.452 200.053 157.475 1.00 64.92 ATOM 98 O THR F 459 222.473 199.649 156.839 1.00 64.92 ATOM 99 CB THR F 459 225.612 198.775 157.160 1.00 64.92 ATOM 100 OG1 THR F 459 226.858 198.797 156.456 1.00 64.92 ATOM 101 CG2 THR F 459 224.859 197.527 156.733 1.00 64.92 ATOM 102 N ILE F 460 223.342 200.565 158.700 1.00 68.37 ATOM 103 CA ILE F 460 222.029 200.717 159.319 1.00 68.37 ATOM 104 C ILE F 460 221.241 201.832 158.638 1.00 68.37 ATOM 105 O ILE F 460 220.050 201.677 158.336 1.00 68.37 ATOM 106 CB ILE F 460 222.184 200.964 160.829 1.00 68.37 ATOM 107 CG1 ILE F 460 222.703 199.707 161.516 1.00 68.37 ATOM 108 CG2 ILE F 460 220.870 201.368 161.458 1.00 68.37 ATOM 109 CD1 ILE F 460 222.941 199.882 162.989 1.00 68.37 ATOM 110 N ASN F 461 221.898 202.956 158.349 1.00 74.64 ATOM 111 CA ASN F 461 221.193 204.125 157.841 1.00 74.64 ATOM 112 C ASN F 461 220.764 203.967 156.391 1.00 74.64 ATOM 113 O ASN F 461 219.734 204.527 156.004 1.00 74.64 ATOM 114 CB ASN F 461 222.061 205.371 158.000 1.00 74.64 ATOM 115 CG ASN F 461 222.143 205.840 159.436 1.00 74.64 ATOM 116 OD1 ASN F 461 223.115 206.473 159.841 1.00 74.64 ATOM 117 ND2 ASN F 461 221.121 205.521 160.218 1.00 74.64 ATOM 118 N LYS F 462 221.511 203.208 155.586 1.00 75.00 ATOM 119 CA LYS F 462 221.045 202.901 154.236 1.00 75.00 ATOM 120 C LYS F 462 219.783 202.052 154.275 1.00 75.00 ATOM 121 O LYS F 462 218.835 202.303 153.519 1.00 75.00 ATOM 122 CB LYS F 462 222.137 202.189 153.444 1.00 75.00 ATOM 123 CG LYS F 462 223.219 203.103 152.922 1.00 75.00 ATOM 124 CD LYS F 462 224.314 202.307 152.236 1.00 75.00 ATOM 125 CE LYS F 462 223.800 201.625 150.979 1.00 75.00 ATOM 126 NZ LYS F 462 223.510 202.597 149.891 1.00 75.00 ATOM 127 N LEU F 463 219.746 201.070 155.182 1.00 79.81 ATOM 128 CA LEU F 463 218.559 200.242 155.364 1.00 79.81 ATOM 129 C LEU F 463 217.378 201.064 155.846 1.00 79.81 ATOM 130 O LEU F 463 216.252 200.863 155.386 1.00 79.81 ATOM 131 CB LEU F 463 218.847 199.122 156.356 1.00 79.81 ATOM 132 CG LEU F 463 219.248 197.785 155.755 1.00 79.81 ATOM 133 CD1 LEU F 463 219.434 196.764 156.846 1.00 79.81 ATOM 134 CD2 LEU F 463 218.183 197.335 154.803 1.00 79.81 ATOM 135 N ASN F 464 217.617 202.017 156.742 1.00 81.30 ATOM 136 CA ASN F 464 216.504 202.807 157.249 1.00 81.30 ATOM 137 C ASN F 464 216.017 203.838 156.241 1.00 81.30 ATOM 138 O ASN F 464 214.817 204.119 156.196 1.00 81.30 ATOM 139 CB ASN F 464 216.889 203.480 158.559 1.00 81.30 ATOM 140 CG ASN F 464 216.852 202.523 159.725 1.00 81.30 ATOM 141 OD1 ASN F 464 216.921 201.309 159.544 1.00 81.30 ATOM 142 ND2 ASN F 464 216.738 203.060 160.931 1.00 81.30 ATOM 143 N ARG F 465 216.900 204.376 155.396 1.00 81.79 ATOM 144 CA ARG F 465 216.438 205.272 154.338 1.00 81.79 ATOM 145 C ARG F 465 215.654 204.516 153.274 1.00 81.79 ATOM 146 O ARG F 465 214.627 205.008 152.786 1.00 81.79 ATOM 147 CB ARG F 465 217.614 206.006 153.704 1.00 81.79 ATOM 148 CG ARG F 465 218.088 207.213 154.483 1.00 81.79 ATOM 149 CD ARG F 465 218.553 208.310 153.546 1.00 81.79 ATOM 150 NE ARG F 465 219.147 207.768 152.329 1.00 81.79 ATOM 151 CZ ARG F 465 220.444 207.542 152.169 1.00 81.79 ATOM 152 NH1 ARG F 465 220.895 207.042 151.029 1.00 81.79 ATOM 153 NH2 ARG F 465 221.291 207.812 153.150 1.00 81.79 ATOM 154 N ILE F 466 216.102 203.309 152.919 1.00 85.23 ATOM 155 CA ILE F 466 215.368 202.516 151.939 1.00 85.23 ATOM 156 C ILE F 466 214.040 202.038 152.522 1.00 85.23 ATOM 157 O ILE F 466 213.013 202.027 151.833 1.00 85.23 ATOM 158 CB ILE F 466 216.255 201.361 151.441 1.00 85.23 ATOM 159 CG1 ILE F 466 217.393 201.936 150.597 1.00 85.23 ATOM 160 CG2 ILE F 466 215.472 200.373 150.602 1.00 85.23 ATOM 161 CD1 ILE F 466 218.317 200.901 150.000 1.00 85.23 ATOM 162 N SER F 467 214.012 201.717 153.815 1.00 88.93 ATOM 163 CA SER F 467 212.757 201.346 154.452 1.00 88.93 ATOM 164 C SER F 467 211.843 202.537 154.698 1.00 88.93 ATOM 165 O SER F 467 210.644 202.339 154.904 1.00 88.93 ATOM 166 CB SER F 467 213.033 200.630 155.770 1.00 88.93 ATOM 167 OG SER F 467 211.869 199.974 156.231 1.00 88.93 ATOM 168 N ARG F 468 212.374 203.760 154.702 1.00 92.77 ATOM 169 CA ARG F 468 211.506 204.929 154.689 1.00 92.77 ATOM 170 C ARG F 468 210.929 205.178 153.309 1.00 92.77 ATOM 171 O ARG F 468 209.782 205.618 153.192 1.00 92.77 ATOM 172 CB ARG F 468 212.260 206.175 155.146 1.00 92.77 ATOM 173 CG ARG F 468 212.153 206.479 156.622 1.00 92.77 ATOM 174 CD ARG F 468 212.393 207.955 156.871 1.00 92.77 ATOM 175 NE ARG F 468 213.007 208.200 158.173 1.00 92.77 ATOM 176 CZ ARG F 468 214.308 208.400 158.360 1.00 92.77 ATOM 177 NH1 ARG F 468 215.139 208.388 157.327 1.00 92.77 ATOM 178 NH2 ARG F 468 214.778 208.617 159.580 1.00 92.77 ATOM 179 N GLN F 469 211.707 204.917 152.259 1.00 92.69 ATOM 180 CA GLN F 469 211.193 205.137 150.914 1.00 92.69 ATOM 181 C GLN F 469 210.189 204.070 150.497 1.00 92.69 ATOM 182 O GLN F 469 209.236 204.376 149.771 1.00 92.69 ATOM 183 CB GLN F 469 212.337 205.188 149.908 1.00 92.69 ATOM 184 CG GLN F 469 211.980 205.916 148.636 1.00 92.69 ATOM 185 CD GLN F 469 213.134 205.989 147.670 1.00 92.69 ATOM 186 OE1 GLN F 469 214.034 205.150 147.697 1.00 92.69 ATOM 187 NE2 GLN F 469 213.118 206.993 146.805 1.00 92.69 ATOM 188 N MET F 470 210.370 202.830 150.954 1.00 95.09 ATOM 189 CA MET F 470 209.468 201.756 150.556 1.00 95.09 ATOM 190 C MET F 470 208.085 201.894 151.175 1.00 95.09 ATOM 191 O MET F 470 207.117 201.394 150.598 1.00 95.09 ATOM 192 CB MET F 470 210.064 200.399 150.924 1.00 95.09 ATOM 193 CG MET F 470 211.220 199.970 150.039 1.00 95.09 ATOM 194 SD MET F 470 210.718 198.915 148.673 1.00 95.09 ATOM 195 CE MET F 470 210.343 197.404 149.547 1.00 95.09 ATOM 196 N LEU F 471 207.964 202.580 152.313 1.00 94.83 ATOM 197 CA LEU F 471 206.648 202.805 152.902 1.00 94.83 ATOM 198 C LEU F 471 205.858 203.845 152.120 1.00 94.83 ATOM 199 O LEU F 471 204.643 203.704 151.952 1.00 94.83 ATOM 200 CB LEU F 471 206.782 203.235 154.361 1.00 94.83 ATOM 201 CG LEU F 471 206.541 202.143 155.399 1.00 94.83 ATOM 202 CD1 LEU F 471 206.660 202.705 156.799 1.00 94.83 ATOM 203 CD2 LEU F 471 205.178 201.523 155.195 1.00 94.83 ATOM 204 N GLN F 472 206.526 204.897 151.648 1.00 92.57 ATOM 205 CA GLN F 472 205.852 205.870 150.799 1.00 92.57 ATOM 206 C GLN F 472 205.525 205.275 149.437 1.00 92.57 ATOM 207 O GLN F 472 204.464 205.560 148.873 1.00 92.57 ATOM 208 CB GLN F 472 206.712 207.121 150.642 1.00 92.57 ATOM 209 CG GLN F 472 207.236 207.688 151.947 1.00 92.57 ATOM 210 CD GLN F 472 206.237 208.587 152.632 1.00 92.57 ATOM 211 OE1 GLN F 472 205.211 208.944 152.057 1.00 92.57 ATOM 212 NE2 GLN F 472 206.533 208.966 153.867 1.00 92.57 ATOM 213 N GLU F 473 206.418 204.443 148.895 1.00 99.04 ATOM 214 CA GLU F 473 206.176 203.863 147.577 1.00 99.04 ATOM 215 C GLU F 473 205.072 202.815 147.624 1.00 99.04 ATOM 216 O GLU F 473 204.018 202.978 147.000 1.00 99.04 ATOM 217 CB GLU F 473 207.464 203.251 147.021 1.00 99.04 ATOM 218 CG GLU F 473 208.521 204.252 146.583 1.00 99.04 ATOM 219 CD GLU F 473 207.953 205.396 145.771 1.00 99.04 ATOM 220 OE1 GLU F 473 207.801 206.503 146.326 1.00 99.04 ATOM 221 OE2 GLU F 473 207.662 205.189 144.576 1.00 99.04 ATOM 222 N MET F 474 205.287 201.736 148.375 1.00103.92 ATOM 223 CA MET F 474 204.361 200.614 148.312 1.00103.92 ATOM 224 C MET F 474 203.120 200.855 149.164 1.00103.92 ATOM 225 O MET F 474 202.005 200.522 148.746 1.00103.92 ATOM 226 CB MET F 474 205.072 199.331 148.741 1.00103.92 ATOM 227 CG MET F 474 204.248 198.071 148.536 1.00103.92 ATOM 228 SD MET F 474 204.721 196.702 149.607 1.00103.92 ATOM 229 CE MET F 474 203.371 195.570 149.286 1.00103.92 ATOM 230 N GLY F 475 203.284 201.433 150.350 1.00101.11 ATOM 231 CA GLY F 475 202.192 201.596 151.284 1.00101.11 ATOM 232 C GLY F 475 202.135 200.546 152.371 1.00101.11 ATOM 233 O GLY F 475 201.391 200.723 153.343 1.00101.11 ATOM 234 N ARG F 476 202.897 199.468 152.239 1.00107.36 ATOM 235 CA ARG F 476 202.966 198.406 153.228 1.00107.36 ATOM 236 C ARG F 476 204.386 198.339 153.780 1.00107.36 ATOM 237 O ARG F 476 205.348 198.757 153.129 1.00107.36 ATOM 238 CB ARG F 476 202.549 197.064 152.603 1.00107.36 ATOM 239 CG ARG F 476 202.177 195.965 153.585 1.00107.36 ATOM 240 CD ARG F 476 202.355 194.596 152.958 1.00107.36 ATOM 241 NE ARG F 476 203.719 194.390 152.486 1.00107.36 ATOM 242 CZ ARG F 476 204.148 193.270 151.917 1.00107.36 ATOM 243 NH1 ARG F 476 205.407 193.167 151.517 1.00107.36 ATOM 244 NH2 ARG F 476 203.318 192.253 151.748 1.00107.36 ATOM 245 N GLU F 477 204.511 197.829 155.002 1.00110.37 ATOM 246 CA GLU F 477 205.812 197.721 155.653 1.00110.37 ATOM 247 C GLU F 477 206.651 196.649 154.963 1.00110.37 ATOM 248 O GLU F 477 206.170 195.531 154.761 1.00110.37 ATOM 249 CB GLU F 477 205.648 197.387 157.131 1.00110.37 ATOM 250 CG GLU F 477 204.819 198.395 157.918 1.00110.37 ATOM 251 CD GLU F 477 203.341 198.045 157.962 1.00110.37 ATOM 252 OE1 GLU F 477 202.944 197.033 157.348 1.00110.37 ATOM 253 OE2 GLU F 477 202.576 198.785 158.614 1.00110.37 ATOM 254 N PRO F 478 207.895 196.951 154.588 1.00108.57 ATOM 255 CA PRO F 478 208.676 196.012 153.768 1.00108.57 ATOM 256 C PRO F 478 209.211 194.839 154.578 1.00108.57 ATOM 257 O PRO F 478 209.833 195.019 155.627 1.00108.57 ATOM 258 CB PRO F 478 209.817 196.881 153.228 1.00108.57 ATOM 259 CG PRO F 478 209.956 197.978 154.218 1.00108.57 ATOM 260 CD PRO F 478 208.588 198.237 154.775 1.00108.57 ATOM 261 N THR F 479 208.955 193.632 154.082 1.00109.68 ATOM 262 CA THR F 479 209.592 192.442 154.615 1.00109.68 ATOM 263 C THR F 479 211.061 192.435 154.188 1.00109.68 ATOM 264 O THR F 479 211.419 193.072 153.194 1.00109.68 ATOM 265 CB THR F 479 208.853 191.190 154.124 1.00109.68 ATOM 266 OG1 THR F 479 209.523 190.003 154.563 1.00109.68 ATOM 267 CG2 THR F 479 208.760 191.169 152.613 1.00109.68 TER