HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6LWH TITLE Crystal structure of human NEIL1(P2G, E3Q, K242) bound to duplex DNA TITLE 2 containing dihydrothymine (DHT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: Endonuclease 8-like 1; COMPND 3 CHAIN: A, D, G; COMPND 4 MUTATION: YES; COMPND 5 EC: 3.2.2.-,4.2.99.18; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.78 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU G 247 REMARK 465 SER G 248 REMARK 465 GLY G 249 DBREF 6LWH G 1 295 UNP Q96FI4 NEIL1_HUMAN 1 295 SEQRES 1 G 43 GLU SER GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP SEQRES 2 G 43 LEU ARG CYS TYR GLY MET PRO GLY MET SER SER LEU GLN SEQRES 3 G 43 ASP ARG HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO SEQRES 4 G 43 GLY PRO LEU ALA ATOM 1 N GLU G 250 97.703 206.956 177.885 1.00142.77 ATOM 2 CA GLU G 250 97.169 207.413 179.198 1.00146.41 ATOM 3 C GLU G 250 97.984 206.791 180.344 1.00149.14 ATOM 4 O GLU G 250 98.904 207.462 180.856 1.00148.42 ATOM 5 N GLU G 251 97.617 205.572 180.749 1.00152.93 ATOM 6 CA GLU G 251 98.151 204.859 181.945 1.00153.54 ATOM 7 C GLU G 251 99.608 204.431 181.706 1.00150.16 ATOM 8 O GLU G 251 100.401 204.521 182.670 1.00151.47 ATOM 9 N ASP G 252 99.949 203.976 180.492 1.00145.27 ATOM 10 CA ASP G 252 101.340 203.628 180.085 1.00138.81 ATOM 11 C ASP G 252 102.259 204.835 180.332 1.00134.34 ATOM 12 O ASP G 252 103.405 204.623 180.783 1.00128.13 ATOM 13 N PHE G 253 101.762 206.048 180.054 1.00132.61 ATOM 14 CA PHE G 253 102.478 207.335 180.257 1.00128.99 ATOM 15 C PHE G 253 102.717 207.588 181.755 1.00131.08 ATOM 16 O PHE G 253 103.781 208.135 182.078 1.00130.66 ATOM 17 N ALA G 254 101.738 207.260 182.608 1.00132.69 ATOM 18 CA ALA G 254 101.709 207.583 184.057 1.00132.85 ATOM 19 C ALA G 254 102.921 206.973 184.778 1.00129.36 ATOM 20 O ALA G 254 103.550 207.674 185.617 1.00125.79 ATOM 21 CB ALA G 254 100.408 207.122 184.681 1.00137.64 ATOM 22 N ALA G 255 103.228 205.710 184.475 1.00126.37 ATOM 23 CA ALA G 255 104.343 204.954 185.094 1.00124.36 ATOM 24 C ALA G 255 105.672 205.656 184.809 1.00115.91 ATOM 25 O ALA G 255 106.473 205.794 185.740 1.00120.11 ATOM 26 N PHE G 256 105.901 206.085 183.570 1.00107.37 ATOM 27 CA PHE G 256 107.185 206.709 183.163 1.00103.71 ATOM 28 C PHE G 256 107.448 207.957 184.019 1.00107.31 ATOM 29 O PHE G 256 108.594 208.199 184.436 1.00107.23 ATOM 30 CB PHE G 256 107.192 207.005 181.668 1.00 96.45 ATOM 31 CG PHE G 256 108.408 207.744 181.185 1.00 90.38 ATOM 32 CD1 PHE G 256 108.441 209.127 181.205 1.00 88.42 ATOM 33 CD2 PHE G 256 109.510 207.061 180.700 1.00 87.55 ATOM 34 CE1 PHE G 256 109.550 209.816 180.737 1.00 85.19 ATOM 35 CE2 PHE G 256 110.617 207.751 180.230 1.00 84.51 ATOM 36 CZ PHE G 256 110.638 209.123 180.261 1.00 83.48 ATOM 37 N ARG G 257 106.401 208.725 184.309 1.00113.62 ATOM 38 CA ARG G 257 106.524 209.996 185.070 1.00117.22 ATOM 39 C ARG G 257 107.012 209.711 186.504 1.00116.37 ATOM 40 O ARG G 257 107.851 210.493 187.029 1.00117.93 ATOM 41 CB ARG G 257 105.189 210.737 185.000 1.00122.63 ATOM 42 CG ARG G 257 104.874 211.239 183.594 1.00122.40 ATOM 43 CD ARG G 257 105.057 212.744 183.445 1.00126.53 ATOM 44 NE ARG G 257 104.008 213.446 184.193 1.00135.02 ATOM 45 CZ ARG G 257 104.063 214.695 184.659 1.00136.49 ATOM 46 NH1 ARG G 257 105.126 215.453 184.452 1.00136.35 ATOM 47 NH2 ARG G 257 103.038 215.182 185.338 1.00139.34 ATOM 48 N ALA G 258 106.502 208.647 187.125 1.00115.50 ATOM 49 CA ALA G 258 106.906 208.167 188.470 1.00117.01 ATOM 50 C ALA G 258 108.359 207.662 188.463 1.00113.98 ATOM 51 O ALA G 258 109.043 207.850 189.487 1.00115.63 ATOM 52 CB ALA G 258 105.960 207.086 188.929 1.00120.54 ATOM 53 N TRP G 259 108.810 207.034 187.370 1.00109.29 ATOM 54 CA TRP G 259 110.203 206.517 187.212 1.00105.92 ATOM 55 C TRP G 259 111.213 207.677 187.239 1.00102.42 ATOM 56 O TRP G 259 112.306 207.500 187.830 1.00100.19 ATOM 57 CB TRP G 259 110.349 205.683 185.927 1.00103.62 ATOM 58 CG TRP G 259 111.755 205.239 185.634 1.00101.38 ATOM 59 CD1 TRP G 259 112.431 204.183 186.179 1.00102.34 ATOM 60 CD2 TRP G 259 112.685 205.866 184.736 1.00 97.06 ATOM 61 NE1 TRP G 259 113.699 204.095 185.658 1.00100.62 ATOM 62 CE2 TRP G 259 113.893 205.132 184.790 1.00 96.09 ATOM 63 CE3 TRP G 259 112.607 206.975 183.892 1.00 95.06 ATOM 64 CZ2 TRP G 259 115.000 205.464 184.019 1.00 94.22 ATOM 65 CZ3 TRP G 259 113.706 207.307 183.129 1.00 95.16 ATOM 66 CH2 TRP G 259 114.889 206.565 183.205 1.00 95.36 ATOM 67 N LEU G 260 110.877 208.792 186.588 1.00100.32 ATOM 68 CA LEU G 260 111.770 209.974 186.465 1.00 99.29 ATOM 69 C LEU G 260 112.148 210.487 187.860 1.00100.90 ATOM 70 O LEU G 260 111.249 210.612 188.720 1.00103.74 ATOM 71 CB LEU G 260 111.072 211.080 185.670 1.00 99.71 ATOM 72 CG LEU G 260 110.953 210.850 184.168 1.00 98.34 ATOM 73 CD1 LEU G 260 110.161 211.968 183.531 1.00 98.45 ATOM 74 CD2 LEU G 260 112.315 210.693 183.516 1.00 96.89 ATOM 75 N ARG G 261 113.424 210.814 188.045 1.00 97.05 ATOM 76 CA ARG G 261 113.977 211.434 189.274 1.00 97.76 ATOM 77 C ARG G 261 114.334 212.904 189.042 1.00100.35 ATOM 78 O ARG G 261 114.254 213.680 189.999 1.00106.09 ATOM 79 CB ARG G 261 115.220 210.675 189.718 1.00 94.51 ATOM 80 CG ARG G 261 115.011 209.171 189.809 1.00 93.40 ATOM 81 CD ARG G 261 116.295 208.464 190.220 1.00 92.67 ATOM 82 NE ARG G 261 116.220 207.033 189.992 1.00 91.55 ATOM 83 CZ ARG G 261 117.021 206.128 190.543 1.00 91.90 ATOM 84 NH1 ARG G 261 117.923 206.487 191.447 1.00 92.23 ATOM 85 NH2 ARG G 261 116.839 204.851 190.262 1.00 92.34 ATOM 86 N CYS G 262 114.704 213.297 187.826 1.00102.26 ATOM 87 CA CYS G 262 115.253 214.656 187.555 1.00105.28 ATOM 88 C CYS G 262 114.422 215.420 186.512 1.00105.86 ATOM 89 O CYS G 262 113.913 216.525 186.825 1.00107.90 ATOM 90 CB CYS G 262 116.697 214.563 187.097 1.00103.66 ATOM 91 SG CYS G 262 117.490 216.185 187.033 1.00104.25 ATOM 92 N TYR G 263 114.293 214.863 185.314 1.00104.61 ATOM 93 CA TYR G 263 113.679 215.539 184.143 1.00106.89 ATOM 94 C TYR G 263 112.262 216.013 184.489 1.00107.60 ATOM 95 O TYR G 263 111.380 215.182 184.723 1.00104.71 ATOM 96 CB TYR G 263 113.705 214.603 182.931 1.00106.40 ATOM 97 CG TYR G 263 113.114 215.185 181.676 1.00104.16 ATOM 98 CD1 TYR G 263 113.876 215.939 180.798 1.00103.50 ATOM 99 CD2 TYR G 263 111.775 214.996 181.390 1.00105.62 ATOM 100 CE1 TYR G 263 113.318 216.478 179.650 1.00105.56 ATOM 101 CE2 TYR G 263 111.208 215.484 180.226 1.00106.34 ATOM 102 CZ TYR G 263 111.982 216.231 179.357 1.00107.68 ATOM 103 OH TYR G 263 111.387 216.717 178.230 1.00109.14 ATOM 104 N GLY G 264 112.074 217.335 184.549 1.00111.43 ATOM 105 CA GLY G 264 110.765 217.993 184.738 1.00113.22 ATOM 106 C GLY G 264 110.251 217.872 186.164 1.00117.06 ATOM 107 O GLY G 264 109.063 218.133 186.406 1.00117.13 ATOM 108 N MET G 265 111.112 217.515 187.110 1.00120.10 ATOM 109 CA MET G 265 110.665 217.238 188.497 1.00124.74 ATOM 110 C MET G 265 110.664 218.532 189.309 1.00131.49 ATOM 111 O MET G 265 111.595 219.341 189.230 1.00135.03 ATOM 112 CB MET G 265 111.564 216.185 189.152 1.00122.36 ATOM 113 CG MET G 265 111.465 214.834 188.474 1.00118.97 ATOM 114 SD MET G 265 109.779 214.178 188.445 1.00120.23 ATOM 115 CE MET G 265 109.690 213.501 190.108 1.00124.07 ATOM 116 N PRO G 266 109.625 218.760 190.143 1.00134.87 ATOM 117 CA PRO G 266 109.588 219.945 190.992 1.00138.40 ATOM 118 C PRO G 266 110.881 219.991 191.811 1.00137.30 ATOM 119 O PRO G 266 111.357 218.913 192.181 1.00132.60 ATOM 120 CB PRO G 266 108.357 219.751 191.891 1.00143.39 ATOM 121 CG PRO G 266 107.974 218.285 191.729 1.00141.25 ATOM 122 CD PRO G 266 108.479 217.866 190.364 1.00135.86 ATOM 123 N GLY G 267 111.424 221.199 192.016 1.00138.94 ATOM 124 CA GLY G 267 112.601 221.454 192.870 1.00140.93 ATOM 125 C GLY G 267 113.920 221.248 192.142 1.00137.28 ATOM 126 O GLY G 267 114.969 221.394 192.782 1.00135.86 ATOM 127 N MET G 268 113.884 220.932 190.845 1.00133.97 ATOM 128 CA MET G 268 115.101 220.787 190.009 1.00130.42 ATOM 129 C MET G 268 115.321 222.080 189.224 1.00129.47 ATOM 130 O MET G 268 114.324 222.721 188.848 1.00126.28 ATOM 131 CB MET G 268 114.950 219.624 189.031 1.00128.18 ATOM 132 CG MET G 268 114.729 218.298 189.714 1.00128.27 ATOM 133 SD MET G 268 116.224 217.706 190.572 1.00127.43 ATOM 134 CE MET G 268 115.562 216.227 191.341 1.00128.44 ATOM 135 N SER G 269 116.580 222.441 188.992 1.00129.46 ATOM 136 CA SER G 269 116.965 223.572 188.114 1.00132.01 ATOM 137 C SER G 269 116.849 223.104 186.657 1.00130.18 ATOM 138 O SER G 269 116.691 221.875 186.422 1.00127.95 ATOM 139 CB SER G 269 118.351 224.080 188.418 1.00133.77 ATOM 140 OG SER G 269 118.628 224.111 189.811 1.00138.90 ATOM 141 N SER G 270 116.892 224.052 185.722 1.00129.63 ATOM 142 CA SER G 270 116.939 223.800 184.265 1.00124.51 ATOM 143 C SER G 270 117.658 224.967 183.587 1.00126.39 ATOM 144 O SER G 270 117.419 226.101 183.998 1.00129.19 ATOM 145 CB SER G 270 115.554 223.616 183.720 1.00123.06 ATOM 146 OG SER G 270 114.815 224.816 183.844 1.00125.18 ATOM 147 N LEU G 271 118.507 224.683 182.600 1.00124.45 ATOM 148 CA LEU G 271 119.141 225.690 181.707 1.00123.53 ATOM 149 C LEU G 271 118.992 225.242 180.244 1.00118.24 ATOM 150 O LEU G 271 118.662 224.052 179.997 1.00112.96 ATOM 151 N GLN G 272 119.221 226.168 179.309 1.00118.19 ATOM 152 CA GLN G 272 119.369 225.867 177.864 1.00115.73 ATOM 153 C GLN G 272 120.854 225.622 177.596 1.00115.82 ATOM 154 O GLN G 272 121.666 226.437 178.037 1.00117.71 ATOM 155 CB GLN G 272 118.798 226.988 176.994 1.00118.00 ATOM 156 N ASP G 273 121.181 224.507 176.941 1.00113.52 ATOM 157 CA ASP G 273 122.539 224.214 176.413 1.00114.97 ATOM 158 C ASP G 273 122.751 225.083 175.176 1.00120.35 ATOM 159 O ASP G 273 121.822 225.825 174.821 1.00118.94 ATOM 160 CB ASP G 273 122.725 222.724 176.118 1.00109.59 ATOM 161 CG ASP G 273 121.770 222.140 175.093 1.00105.82 ATOM 162 OD1 ASP G 273 121.225 222.904 174.295 1.00108.30 ATOM 163 OD2 ASP G 273 121.594 220.910 175.094 1.00101.46 ATOM 164 N ARG G 274 123.908 224.975 174.527 1.00126.92 ATOM 165 CA ARG G 274 124.305 225.931 173.461 1.00135.58 ATOM 166 C ARG G 274 123.446 225.670 172.213 1.00133.06 ATOM 167 O ARG G 274 123.423 226.537 171.353 1.00137.47 ATOM 168 CB ARG G 274 125.823 225.886 173.215 1.00141.99 ATOM 169 CG ARG G 274 126.264 225.113 171.979 1.00144.86 ATOM 170 CD ARG G 274 127.760 224.837 171.968 1.00150.09 ATOM 171 NE ARG G 274 127.998 223.748 171.032 1.00151.36 ATOM 172 CZ ARG G 274 129.080 223.573 170.271 1.00154.65 ATOM 173 NH1 ARG G 274 129.138 222.533 169.454 1.00151.93 ATOM 174 NH2 ARG G 274 130.101 224.412 170.322 1.00159.92 ATOM 175 N HIS G 275 122.744 224.541 172.120 1.00129.68 ATOM 176 CA HIS G 275 121.837 224.217 170.985 1.00128.65 ATOM 177 C HIS G 275 120.373 224.465 171.382 1.00124.08 ATOM 178 O HIS G 275 119.481 223.981 170.685 1.00119.57 ATOM 179 CB HIS G 275 122.095 222.782 170.494 1.00128.86 ATOM 180 CG HIS G 275 123.532 222.487 170.197 1.00133.84 ATOM 181 ND1 HIS G 275 124.169 222.917 169.038 1.00137.84 ATOM 182 CD2 HIS G 275 124.458 221.795 170.897 1.00136.09 ATOM 183 CE1 HIS G 275 125.421 222.511 169.048 1.00140.99 ATOM 184 NE2 HIS G 275 125.624 221.818 170.178 1.00139.38 ATOM 185 N GLY G 276 120.129 225.192 172.472 1.00124.22 ATOM 186 CA GLY G 276 118.782 225.661 172.849 1.00122.95 ATOM 187 C GLY G 276 117.946 224.606 173.559 1.00119.63 ATOM 188 O GLY G 276 116.776 224.905 173.861 1.00120.47 ATOM 189 N ARG G 277 118.511 223.428 173.846 1.00116.48 ATOM 190 CA ARG G 277 117.810 222.275 174.477 1.00110.01 ATOM 191 C ARG G 277 117.937 222.340 176.003 1.00110.07 ATOM 192 O ARG G 277 119.058 222.543 176.494 1.00109.92 ATOM 193 CB ARG G 277 118.403 220.963 173.970 1.00107.04 ATOM 194 CG ARG G 277 118.387 220.850 172.458 1.00107.65 ATOM 195 CD ARG G 277 118.165 219.430 172.027 1.00105.33 ATOM 196 NE ARG G 277 116.875 218.958 172.502 1.00103.78 ATOM 197 CZ ARG G 277 116.443 217.707 172.385 1.00102.85 ATOM 198 NH1 ARG G 277 117.201 216.801 171.786 1.00102.57 ATOM 199 NH2 ARG G 277 115.238 217.376 172.830 1.00101.76 ATOM 200 N THR G 278 116.828 222.123 176.712 1.00108.82 ATOM 201 CA THR G 278 116.711 222.227 178.189 1.00109.13 ATOM 202 C THR G 278 117.379 221.016 178.852 1.00107.64 ATOM 203 O THR G 278 116.982 219.870 178.545 1.00104.94 ATOM 204 CB THR G 278 115.245 222.307 178.643 1.00108.19 ATOM 205 OG1 THR G 278 114.630 223.488 178.130 1.00109.45 ATOM 206 CG2 THR G 278 115.096 222.310 180.149 1.00110.37 ATOM 207 N ILE G 279 118.327 221.276 179.759 1.00110.36 ATOM 208 CA ILE G 279 118.952 220.253 180.654 1.00108.97 ATOM 209 C ILE G 279 118.394 220.443 182.069 1.00110.83 ATOM 210 O ILE G 279 118.462 221.574 182.568 1.00116.52 ATOM 211 CB ILE G 279 120.491 220.336 180.632 1.00108.07 ATOM 212 CG1 ILE G 279 121.103 219.275 181.547 1.00105.43 ATOM 213 CG2 ILE G 279 120.987 221.738 180.965 1.00111.25 ATOM 214 N TRP G 280 117.854 219.378 182.668 1.00109.93 ATOM 215 CA TRP G 280 117.435 219.311 184.095 1.00112.25 ATOM 216 C TRP G 280 118.578 218.748 184.955 1.00114.22 ATOM 217 O TRP G 280 119.305 217.855 184.483 1.00111.14 ATOM 218 CB TRP G 280 116.153 218.484 184.235 1.00110.70 ATOM 219 CG TRP G 280 114.972 219.149 183.605 1.00110.55 ATOM 220 CD1 TRP G 280 114.597 219.059 182.299 1.00108.23 ATOM 221 CD2 TRP G 280 114.025 220.027 184.241 1.00114.64 ATOM 222 NE1 TRP G 280 113.483 219.819 182.072 1.00109.93 ATOM 223 CE2 TRP G 280 113.106 220.423 183.243 1.00113.78 ATOM 224 N PHE G 281 118.713 219.246 186.187 1.00117.91 ATOM 225 CA PHE G 281 119.818 218.903 187.121 1.00118.91 ATOM 226 C PHE G 281 119.499 219.429 188.530 1.00121.83 ATOM 227 O PHE G 281 118.528 220.225 188.684 1.00123.78 ATOM 228 CB PHE G 281 121.135 219.487 186.597 1.00120.12 ATOM 229 CG PHE G 281 121.148 220.992 186.516 1.00123.76 ATOM 230 CD1 PHE G 281 120.520 221.650 185.467 1.00123.64 ATOM 231 CD2 PHE G 281 121.745 221.755 187.511 1.00126.54 ATOM 232 CE1 PHE G 281 120.509 223.039 185.402 1.00126.40 ATOM 233 CE2 PHE G 281 121.761 223.140 187.431 1.00128.88 ATOM 234 CZ PHE G 281 121.138 223.778 186.382 1.00128.53 ATOM 235 N GLN G 282 120.290 218.987 189.517 1.00121.05 ATOM 236 CA GLN G 282 120.236 219.433 190.935 1.00126.94 ATOM 237 C GLN G 282 121.565 220.109 191.278 1.00131.06 ATOM 238 O GLN G 282 122.615 219.668 190.787 1.00128.06 ATOM 239 CB GLN G 282 119.972 218.269 191.895 1.00126.67 ATOM 240 N GLY G 283 121.512 221.177 192.070 1.00136.24 ATOM 241 CA GLY G 283 122.704 221.905 192.538 1.00139.53 ATOM 242 C GLY G 283 123.485 222.556 191.405 1.00139.68 ATOM 243 O GLY G 283 122.885 223.273 190.563 1.00139.36 ATOM 244 N ASP G 284 124.796 222.327 191.404 1.00139.84 ATOM 245 CA ASP G 284 125.798 223.171 190.702 1.00141.37 ATOM 246 C ASP G 284 125.597 222.984 189.204 1.00137.27 ATOM 247 O ASP G 284 125.575 221.852 188.719 1.00133.09 ATOM 248 CB ASP G 284 127.216 222.849 191.206 1.00143.44 ATOM 249 CG ASP G 284 128.379 223.418 190.398 1.00144.97 ATOM 250 OD1 ASP G 284 128.211 224.491 189.792 1.00146.97 ATOM 251 OD2 ASP G 284 129.463 222.786 190.398 1.00144.06 ATOM 252 N PRO G 285 125.382 224.095 188.464 1.00137.51 ATOM 253 CA PRO G 285 125.303 224.046 187.004 1.00136.00 ATOM 254 C PRO G 285 126.596 223.557 186.326 1.00137.20 ATOM 255 O PRO G 285 126.510 222.809 185.381 1.00138.49 ATOM 256 N GLY G 286 127.761 224.001 186.801 1.00140.72 ATOM 257 CA GLY G 286 129.071 223.636 186.223 1.00139.42 ATOM 258 C GLY G 286 129.748 224.810 185.515 1.00142.24 ATOM 259 O GLY G 286 129.124 225.828 185.244 1.00145.23 ATOM 260 N PRO G 287 131.056 224.704 185.192 1.00142.29 ATOM 261 CA PRO G 287 131.798 225.837 184.641 1.00145.08 ATOM 262 C PRO G 287 131.271 226.433 183.321 1.00145.28 ATOM 263 O PRO G 287 131.332 227.623 183.186 1.00150.23 ATOM 264 N LEU G 288 130.783 225.624 182.382 1.00140.89 ATOM 265 CA LEU G 288 130.662 226.038 180.955 1.00141.37 ATOM 266 C LEU G 288 129.219 226.392 180.574 1.00141.13 ATOM 267 O LEU G 288 128.820 226.014 179.452 1.00140.22 ATOM 268 N ALA G 289 128.489 227.121 181.421 1.00141.81 ATOM 269 CA ALA G 289 127.037 227.405 181.262 1.00138.39 ATOM 270 C ALA G 289 126.732 228.213 179.993 1.00136.67 ATOM 271 O ALA G 289 127.555 228.998 179.581 1.00138.42 ATOM 272 CB ALA G 289 126.524 228.121 182.484 1.00140.62 TER