HEADER VIRAL PROTEIN/IMMUNE SYSTEM 31-DEC-69 6MFP TITLE Crystal Structure of the RV305 C1-C2 specific ADCC potent antibody TITLE 2 DH677.3 Fab in complex with HIV-1 clade A/E gp120 and M48U1 COMPND MOL_ID: 2; COMPND 2 MOLECULE: M48U1 CD4 MIMETIC PEPTIDE; COMPND 3 CHAIN: N, M; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.00 ANGSTORMS DBREF 6MFP N 1 28 PDB 6MFP 6MFP 1 28 SEQRES 1 N 28 MPT ASN LEU HIS PHE CYS GLN LEU ARG CYS LYS SER LEU SEQRES 2 N 28 GLY LEU LEU GLY ARG CYS ALA DPR THR U2X CYS ALA CYS SEQRES 3 N 28 VAL NH2 ATOM 1 CA MPT N 1 1.022 -25.907 -14.357 1.00114.29 ATOM 2 C MPT N 1 1.461 -26.450 -15.710 1.00112.70 ATOM 3 O MPT N 1 2.525 -25.989 -16.196 1.00111.49 ATOM 4 CB MPT N 1 -0.121 -24.932 -14.408 1.00117.32 ATOM 5 SG MPT N 1 -0.390 -24.144 -16.016 1.00120.01 ATOM 6 N ASN N 2 1.064 -27.487 -16.357 1.00123.78 ATOM 7 CA ASN N 2 1.381 -27.831 -17.796 1.00126.47 ATOM 8 C ASN N 2 0.873 -26.688 -18.685 1.00129.58 ATOM 9 O ASN N 2 -0.331 -26.676 -19.017 1.00130.35 ATOM 10 CB ASN N 2 0.833 -29.202 -18.208 1.00120.20 ATOM 11 CG ASN N 2 -0.605 -29.443 -17.793 1.00119.08 ATOM 12 OD1 ASN N 2 -1.272 -28.555 -17.263 1.00112.59 ATOM 13 ND2 ASN N 2 -1.094 -30.647 -18.035 1.00118.50 ATOM 14 N LEU N 3 1.757 -25.741 -19.019 1.00133.25 ATOM 15 CA LEU N 3 1.377 -24.443 -19.637 1.00135.72 ATOM 16 C LEU N 3 0.747 -24.697 -21.007 1.00142.97 ATOM 17 O LEU N 3 -0.445 -24.392 -21.158 1.00154.03 ATOM 18 CB LEU N 3 2.592 -23.519 -19.764 1.00130.58 ATOM 19 CG LEU N 3 2.327 -22.222 -20.529 1.00125.29 ATOM 20 CD1 LEU N 3 1.137 -21.482 -19.936 1.00122.30 ATOM 21 CD2 LEU N 3 3.560 -21.334 -20.547 1.00125.44 ATOM 22 N HIS N 4 1.512 -25.238 -21.959 1.00144.86 ATOM 23 CA HIS N 4 1.060 -25.465 -23.359 1.00151.74 ATOM 24 C HIS N 4 -0.266 -26.242 -23.355 1.00151.14 ATOM 25 O HIS N 4 -1.180 -25.842 -24.111 1.00149.35 ATOM 26 CB HIS N 4 2.178 -26.112 -24.188 1.00156.69 ATOM 27 CG HIS N 4 3.191 -25.116 -24.643 1.00162.66 ATOM 28 ND1 HIS N 4 4.093 -24.533 -23.773 1.00166.92 ATOM 29 CD2 HIS N 4 3.424 -24.568 -25.856 1.00165.19 ATOM 30 CE1 HIS N 4 4.850 -23.680 -24.434 1.00168.69 ATOM 31 NE2 HIS N 4 4.461 -23.684 -25.716 1.00169.15 ATOM 32 N PHE N 5 -0.381 -27.271 -22.507 1.00148.63 ATOM 33 CA PHE N 5 -1.642 -28.023 -22.251 1.00142.94 ATOM 34 C PHE N 5 -2.746 -27.035 -21.850 1.00134.76 ATOM 35 O PHE N 5 -3.857 -27.128 -22.409 1.00125.08 ATOM 36 CB PHE N 5 -1.437 -29.094 -21.174 1.00145.74 ATOM 37 CG PHE N 5 -2.602 -30.034 -20.981 1.00149.15 ATOM 38 CD1 PHE N 5 -2.633 -31.264 -21.620 1.00146.98 ATOM 39 CD2 PHE N 5 -3.665 -29.693 -20.156 1.00153.36 ATOM 40 CE1 PHE N 5 -3.701 -32.130 -21.435 1.00149.19 ATOM 41 CE2 PHE N 5 -4.734 -30.559 -19.975 1.00150.19 ATOM 42 CZ PHE N 5 -4.749 -31.777 -20.614 1.00147.89 ATOM 43 N CYS N 6 -2.437 -26.121 -20.919 1.00135.71 ATOM 44 CA CYS N 6 -3.363 -25.082 -20.383 1.00134.91 ATOM 45 C CYS N 6 -3.762 -24.091 -21.489 1.00124.99 ATOM 46 O CYS N 6 -4.947 -23.709 -21.524 1.00118.67 ATOM 47 CB CYS N 6 -2.769 -24.350 -19.180 1.00138.76 ATOM 48 SG CYS N 6 -3.773 -22.955 -18.596 1.00142.90 ATOM 49 N GLN N 7 -2.821 -23.686 -22.350 1.00116.86 ATOM 50 CA GLN N 7 -3.062 -22.686 -23.429 1.00112.25 ATOM 51 C GLN N 7 -4.072 -23.259 -24.430 1.00113.97 ATOM 52 O GLN N 7 -5.032 -22.541 -24.779 1.00115.86 ATOM 53 CB GLN N 7 -1.744 -22.290 -24.095 1.00107.03 ATOM 54 CG GLN N 7 -0.872 -21.409 -23.211 1.00102.99 ATOM 55 CD GLN N 7 0.500 -21.175 -23.792 1.00 98.68 ATOM 56 OE1 GLN N 7 1.013 -21.975 -24.568 1.00100.93 ATOM 57 NE2 GLN N 7 1.113 -20.071 -23.404 1.00 95.08 ATOM 58 N LEU N 8 -3.874 -24.514 -24.843 1.00116.78 ATOM 59 CA LEU N 8 -4.770 -25.248 -25.779 1.00119.80 ATOM 60 C LEU N 8 -6.168 -25.406 -25.159 1.00124.16 ATOM 61 O LEU N 8 -7.166 -25.080 -25.847 1.00142.95 ATOM 62 CB LEU N 8 -4.134 -26.606 -26.099 1.00118.61 ATOM 63 CG LEU N 8 -5.046 -27.630 -26.775 1.00121.18 ATOM 64 CD1 LEU N 8 -4.288 -28.401 -27.845 1.00126.90 ATOM 65 CD2 LEU N 8 -5.657 -28.588 -25.758 1.00119.96 ATOM 66 N ARG N 9 -6.242 -25.897 -23.918 1.00117.70 ATOM 67 CA ARG N 9 -7.520 -26.235 -23.230 1.00114.15 ATOM 68 C ARG N 9 -8.335 -24.961 -22.969 1.00111.19 ATOM 69 O ARG N 9 -9.569 -25.076 -22.884 1.00111.39 ATOM 70 CB ARG N 9 -7.260 -26.999 -21.927 1.00114.87 ATOM 71 CG ARG N 9 -6.464 -26.215 -20.896 1.00116.62 ATOM 72 CD ARG N 9 -6.218 -26.996 -19.621 1.00118.94 ATOM 73 NE ARG N 9 -7.433 -27.105 -18.827 1.00125.62 ATOM 74 CZ ARG N 9 -7.543 -27.786 -17.689 1.00126.03 ATOM 75 NH1 ARG N 9 -6.504 -28.444 -17.199 1.00129.67 ATOM 76 NH2 ARG N 9 -8.699 -27.812 -17.048 1.00120.80 ATOM 77 N CYS N 10 -7.680 -23.806 -22.804 1.00112.07 ATOM 78 CA CYS N 10 -8.354 -22.487 -22.644 1.00117.42 ATOM 79 C CYS N 10 -8.809 -21.988 -24.018 1.00119.51 ATOM 80 O CYS N 10 -9.935 -21.452 -24.102 1.00116.29 ATOM 81 CB CYS N 10 -7.464 -21.441 -21.978 1.00117.23 ATOM 82 SG CYS N 10 -7.227 -21.693 -20.197 1.00121.08 ATOM 83 N LYS N 11 -7.973 -22.178 -25.049 1.00127.68 ATOM 84 CA LYS N 11 -8.301 -21.829 -26.461 1.00124.75 ATOM 85 C LYS N 11 -9.606 -22.530 -26.859 1.00121.87 ATOM 86 O LYS N 11 -10.349 -21.946 -27.663 1.00126.84 ATOM 87 CB LYS N 11 -7.168 -22.180 -27.434 1.00123.62 ATOM 88 CG LYS N 11 -7.525 -21.999 -28.907 1.00119.20 ATOM 89 CD LYS N 11 -6.370 -21.629 -29.812 1.00115.28 ATOM 90 CE LYS N 11 -6.841 -21.146 -31.168 1.00110.17 ATOM 91 NZ LYS N 11 -5.709 -20.747 -32.035 1.00110.70 ATOM 92 N SER N 12 -9.894 -23.709 -26.297 1.00117.80 ATOM 93 CA SER N 12 -11.210 -24.393 -26.422 1.00114.99 ATOM 94 C SER N 12 -12.345 -23.382 -26.191 1.00111.61 ATOM 95 O SER N 12 -13.376 -23.490 -26.871 1.00119.72 ATOM 96 CB SER N 12 -11.313 -25.569 -25.477 1.00117.15 ATOM 97 OG SER N 12 -12.616 -26.140 -25.494 1.00111.97 ATOM 98 N LEU N 13 -12.161 -22.425 -25.278 1.00104.15 ATOM 99 CA LEU N 13 -13.190 -21.415 -24.917 1.00103.75 ATOM 100 C LEU N 13 -12.828 -20.043 -25.501 1.00100.79 ATOM 101 O LEU N 13 -13.410 -19.039 -25.049 1.00 97.58 ATOM 102 CB LEU N 13 -13.291 -21.369 -23.390 1.00107.51 ATOM 103 CG LEU N 13 -13.868 -22.629 -22.748 1.00112.10 ATOM 104 CD1 LEU N 13 -13.336 -22.813 -21.334 1.00114.98 ATOM 105 CD2 LEU N 13 -15.391 -22.589 -22.758 1.00113.25 ATOM 106 N GLY N 14 -11.921 -20.000 -26.482 1.00101.04 ATOM 107 CA GLY N 14 -11.443 -18.762 -27.131 1.00102.82 ATOM 108 C GLY N 14 -10.789 -17.806 -26.147 1.00103.18 ATOM 109 O GLY N 14 -10.815 -16.587 -26.417 1.00 98.00 ATOM 110 N LEU N 15 -10.220 -18.340 -25.056 1.00107.40 ATOM 111 CA LEU N 15 -9.515 -17.583 -23.984 1.00100.58 ATOM 112 C LEU N 15 -8.031 -17.952 -24.012 1.00 99.32 ATOM 113 O LEU N 15 -7.709 -19.049 -24.505 1.00 96.27 ATOM 114 CB LEU N 15 -10.131 -17.925 -22.624 1.00 97.66 ATOM 115 CG LEU N 15 -11.607 -17.565 -22.457 1.00102.63 ATOM 116 CD1 LEU N 15 -12.139 -18.030 -21.109 1.00101.27 ATOM 117 CD2 LEU N 15 -11.834 -16.070 -22.630 1.00104.61 ATOM 118 N LEU N 16 -7.175 -17.056 -23.511 1.00105.30 ATOM 119 CA LEU N 16 -5.717 -17.298 -23.330 1.00110.38 ATOM 120 C LEU N 16 -5.511 -18.147 -22.072 1.00108.12 ATOM 121 O LEU N 16 -6.397 -18.140 -21.189 1.00105.48 ATOM 122 CB LEU N 16 -4.953 -15.973 -23.219 1.00111.96 ATOM 123 CG LEU N 16 -4.767 -15.197 -24.523 1.00114.47 ATOM 124 CD1 LEU N 16 -6.012 -14.395 -24.875 1.00115.00 ATOM 125 CD2 LEU N 16 -3.555 -14.280 -24.442 1.00114.20 ATOM 126 N GLY N 17 -4.378 -18.848 -22.010 1.00104.94 ATOM 127 CA GLY N 17 -3.993 -19.707 -20.878 1.00100.03 ATOM 128 C GLY N 17 -2.990 -19.009 -19.987 1.00 95.36 ATOM 129 O GLY N 17 -2.058 -18.389 -20.528 1.00 91.18 ATOM 130 N ARG N 18 -3.196 -19.089 -18.671 1.00 97.21 ATOM 131 CA ARG N 18 -2.203 -18.700 -17.637 1.00101.19 ATOM 132 C ARG N 18 -2.136 -19.799 -16.575 1.00100.07 ATOM 133 O ARG N 18 -3.196 -20.339 -16.208 1.00104.52 ATOM 134 CB ARG N 18 -2.581 -17.371 -16.980 1.00103.80 ATOM 135 CG ARG N 18 -2.390 -16.149 -17.866 1.00111.44 ATOM 136 CD ARG N 18 -2.715 -14.857 -17.132 1.00117.58 ATOM 137 NE ARG N 18 -4.102 -14.820 -16.675 1.00126.11 ATOM 138 CZ ARG N 18 -4.537 -15.176 -15.462 1.00133.19 ATOM 139 NH1 ARG N 18 -3.698 -15.602 -14.530 1.00135.03 ATOM 140 NH2 ARG N 18 -5.828 -15.107 -15.186 1.00134.85 ATOM 141 N CYS N 19 -0.932 -20.115 -16.100 1.00 98.46 ATOM 142 CA CYS N 19 -0.712 -20.951 -14.893 1.00 95.28 ATOM 143 C CYS N 19 -1.036 -20.103 -13.658 1.00 90.21 ATOM 144 O CYS N 19 -0.526 -18.972 -13.568 1.00 83.77 ATOM 145 CB CYS N 19 0.715 -21.486 -14.840 1.00 97.29 ATOM 146 SG CYS N 19 1.069 -22.717 -16.122 1.00107.84 ATOM 147 N ALA N 20 -1.897 -20.608 -12.773 1.00 91.51 ATOM 148 CA ALA N 20 -2.178 -20.031 -11.437 1.00 93.15 ATOM 149 C ALA N 20 -1.531 -20.929 -10.385 1.00 97.37 ATOM 150 O ALA N 20 -2.218 -21.712 -9.737 1.00107.11 ATOM 151 CB ALA N 20 -3.667 -19.900 -11.230 1.00 88.07 ATOM 152 N DPR N 21 -0.193 -20.864 -10.191 1.00 91.55 ATOM 153 CA DPR N 21 0.511 -21.867 -9.402 1.00 90.25 ATOM 154 CB DPR N 21 1.869 -21.235 -9.071 1.00 91.75 ATOM 155 CG DPR N 21 2.068 -20.137 -10.101 1.00 92.93 ATOM 156 CD DPR N 21 0.711 -19.830 -10.707 1.00 93.28 ATOM 157 C DPR N 21 0.667 -23.150 -10.228 1.00 91.08 ATOM 158 O DPR N 21 1.156 -23.074 -11.337 1.00 90.52 ATOM 159 N THR N 22 0.231 -24.280 -9.667 1.00 97.39 ATOM 160 CA THR N 22 0.283 -25.626 -10.296 1.00 98.60 ATOM 161 C THR N 22 -1.039 -25.885 -11.032 1.00102.20 ATOM 162 O THR N 22 -1.339 -27.048 -11.326 1.00113.05 ATOM 163 CB THR N 22 0.594 -26.698 -9.244 1.00 97.74 ATOM 164 OG1 THR N 22 -0.521 -26.789 -8.357 1.00 94.59 ATOM 165 CG2 THR N 22 1.853 -26.397 -8.459 1.00 98.54 ATOM 166 N U2X N 23 -2.002 -25.115 -11.364 1.00 97.70 ATOM 167 C U2X N 23 -3.287 -24.357 -13.307 1.00104.64 ATOM 168 O U2X N 23 -2.665 -23.285 -13.321 1.00 99.51 ATOM 169 CA U2X N 23 -3.320 -25.086 -11.942 1.00 97.34 ATOM 170 CB U2X N 23 -4.325 -24.445 -11.007 1.00 91.48 ATOM 171 CG U2X N 23 -4.356 -25.067 -9.619 1.00 90.03 ATOM 172 CD1 U2X N 23 -4.407 -26.452 -9.421 1.00 89.36 ATOM 173 CD2 U2X N 23 -4.328 -24.214 -8.514 1.00 89.04 ATOM 174 CE1 U2X N 23 -4.418 -26.972 -8.108 1.00 86.64 ATOM 175 CE2 U2X N 23 -4.343 -24.733 -7.207 1.00 85.63 ATOM 176 CZ U2X N 23 -4.385 -26.108 -7.006 1.00 85.10 ATOM 177 OH U2X N 23 -4.433 -26.617 -5.653 1.00 89.63 ATOM 178 C7 U2X N 23 -5.583 -26.085 -4.944 1.00 89.98 ATOM 179 C1 U2X N 23 -6.933 -26.498 -1.386 1.00 88.96 ATOM 180 C2 U2X N 23 -6.608 -25.850 -2.706 1.00 88.93 ATOM 181 C3 U2X N 23 -5.726 -26.739 -3.556 1.00 89.51 ATOM 182 C4 U2X N 23 -6.263 -28.138 -3.725 1.00 88.61 ATOM 183 C5 U2X N 23 -6.710 -28.746 -2.420 1.00 90.16 ATOM 184 C6 U2X N 23 -7.598 -27.822 -1.615 1.00 89.87 ATOM 185 N CYS N 24 -4.366 -24.340 -14.015 1.00118.68 ATOM 186 CA CYS N 24 -4.684 -23.637 -15.294 1.00117.27 ATOM 187 C CYS N 24 -5.796 -22.605 -15.056 1.00108.87 ATOM 188 O CYS N 24 -6.812 -22.962 -14.426 1.00 98.30 ATOM 189 CB CYS N 24 -5.097 -24.614 -16.391 1.00124.45 ATOM 190 SG CYS N 24 -5.524 -23.800 -17.953 1.00141.68 ATOM 191 N ALA N 25 -5.588 -21.377 -15.543 1.00102.36 ATOM 192 CA ALA N 25 -6.574 -20.272 -15.581 1.00 97.90 ATOM 193 C ALA N 25 -6.754 -19.810 -17.032 1.00 98.35 ATOM 194 O ALA N 25 -5.781 -19.903 -17.816 1.00 97.46 ATOM 195 CB ALA N 25 -6.116 -19.141 -14.694 1.00 94.85 ATOM 196 N CYS N 26 -7.954 -19.336 -17.376 1.00100.05 ATOM 197 CA CYS N 26 -8.312 -18.855 -18.737 1.00107.81 ATOM 198 C CYS N 26 -8.787 -17.400 -18.660 1.00112.81 ATOM 199 O CYS N 26 -9.755 -17.160 -17.936 1.00116.81 ATOM 200 CB CYS N 26 -9.409 -19.712 -19.364 1.00110.26 ATOM 201 SG CYS N 26 -9.083 -21.496 -19.357 1.00113.60 ATOM 202 N VAL N 27 -8.101 -16.472 -19.340 1.00118.36 ATOM 203 CA VAL N 27 -8.614 -15.110 -19.692 1.00122.88 ATOM 204 C VAL N 27 -8.002 -14.716 -21.043 1.00136.42 ATOM 205 O VAL N 27 -8.267 -15.357 -22.062 1.00138.30 ATOM 206 CB VAL N 27 -8.316 -14.040 -18.617 1.00122.22 ATOM 207 CG1 VAL N 27 -8.857 -12.672 -19.018 1.00118.45 ATOM 208 CG2 VAL N 27 -8.850 -14.421 -17.244 1.00123.36 ATOM 209 N NH2 N 28 -7.182 -13.891 -21.547 1.00155.43 TER